Wall clock time and date at job start Tue Mar 31 2020 23:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47100 * 2 1 4 4 C 1.53001 * 109.47208 * 119.99835 * 2 1 3 5 5 C 1.53001 * 109.47114 * 65.83288 * 4 2 1 6 6 H 1.09004 * 109.46892 * 306.61629 * 5 4 2 7 7 C 1.52988 * 109.47276 * 186.61698 * 5 4 2 8 8 C 1.50703 * 109.47273 * 66.61142 * 5 4 2 9 9 O 1.21286 * 119.99867 * 0.02562 * 8 5 4 10 10 N 1.34775 * 119.99959 * 180.02562 * 8 5 4 11 11 C 1.46504 * 119.99620 * 180.02562 * 10 8 5 12 12 H 1.08998 * 110.35529 * 32.85832 * 11 10 8 13 13 C 1.53993 * 110.30737 * 270.71241 * 11 10 8 14 14 N 1.47896 * 107.06008 * 242.31339 * 13 11 10 15 15 C 1.46903 * 110.99984 * 214.16082 * 14 13 11 16 16 C 1.50706 * 109.46934 * 287.39435 * 15 14 13 17 17 O 1.21292 * 119.99782 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00120 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00130 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99797 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00069 * 180.02562 * 19 18 16 22 22 N 1.31418 * 120.00011 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00042 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47329 * 89.99971 * 23 21 19 25 25 H 1.48501 * 109.47324 * 209.99848 * 23 21 19 26 26 H 1.48503 * 109.47210 * 329.99690 * 23 21 19 27 27 C 1.48539 * 105.81973 * 334.67085 * 14 13 11 28 28 C 1.54600 * 110.30338 * 155.00088 * 11 10 8 29 29 H 1.08994 * 110.72491 * 22.51356 * 28 11 10 30 30 C 1.53000 * 110.72348 * 259.22565 * 28 11 10 31 31 H 1.08998 * 109.47367 * 54.87163 * 1 2 3 32 32 H 1.09007 * 109.47278 * 174.86704 * 1 2 3 33 33 H 1.08997 * 109.47194 * 294.86909 * 1 2 3 34 34 H 1.08997 * 109.47254 * 240.00466 * 2 1 3 35 35 H 1.08999 * 109.47470 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.47103 * 300.00023 * 3 2 1 37 37 H 1.08998 * 109.47112 * 59.99802 * 3 2 1 38 38 H 1.09000 * 109.46954 * 305.83167 * 4 2 1 39 39 H 1.09004 * 109.46834 * 185.83215 * 4 2 1 40 40 H 1.09003 * 109.47378 * 175.00612 * 7 5 4 41 41 H 1.08999 * 109.47311 * 295.00624 * 7 5 4 42 42 H 1.09001 * 109.47389 * 55.00355 * 7 5 4 43 43 H 0.96996 * 120.00224 * 0.02562 * 10 8 5 44 44 H 1.09002 * 109.91632 * 122.95974 * 13 11 10 45 45 H 1.09001 * 110.08337 * 1.75870 * 13 11 10 46 46 H 1.08998 * 109.47379 * 47.38866 * 15 14 13 47 47 H 1.08997 * 109.47528 * 167.39502 * 15 14 13 48 48 H 0.97001 * 119.99759 * 0.02562 * 18 16 15 49 49 H 0.96998 * 120.00270 * 179.97438 * 22 21 19 50 50 H 1.09000 * 110.66296 * 280.77433 * 27 14 13 51 51 H 1.09001 * 110.66262 * 157.64495 * 27 14 13 52 52 H 1.08995 * 109.47148 * 305.04845 * 30 28 11 53 53 H 1.09001 * 109.46580 * 65.05008 * 30 28 11 54 54 H 1.08997 * 109.47074 * 185.04944 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6532 -2.1998 1.1782 6 1 0.5803 -2.2868 1.0065 7 6 2.0160 -2.8858 2.4966 8 6 2.3981 -2.8601 0.0467 9 8 3.1634 -2.2120 -0.6354 10 7 2.2139 -4.1708 -0.2073 11 6 2.9385 -4.8128 -1.3069 12 1 3.9211 -4.3575 -1.4303 13 6 2.1313 -4.7049 -2.6139 14 7 1.8110 -6.0840 -3.0412 15 6 1.8041 -6.1930 -4.5062 16 6 0.5800 -5.5065 -5.0551 17 8 -0.2087 -4.9780 -4.3003 18 7 0.3622 -5.4789 -6.3849 19 6 -0.7517 -4.8548 -6.8843 20 1 -1.4544 -4.3849 -6.2120 21 6 -0.9765 -4.8268 -8.2551 22 7 -2.0439 -4.2281 -8.7338 23 14 0.2385 -5.6401 -9.4177 24 1 -0.1542 -7.0559 -9.6331 25 1 0.2360 -4.9225 -10.7178 26 1 1.5998 -5.5884 -8.8265 27 6 2.8649 -6.9467 -2.4483 28 6 3.0792 -6.3296 -1.0433 29 1 2.3118 -6.6735 -0.3499 30 6 4.4764 -6.6599 -0.5144 31 1 -0.3634 0.5913 -0.8405 32 1 -0.3634 -1.0236 -0.0919 33 1 -0.3633 0.4322 0.9323 34 1 1.8933 -0.5137 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8899 38 1 1.5939 -0.2712 2.1361 39 1 3.1250 -0.6316 1.3030 40 1 1.6608 -3.9162 2.4799 41 1 3.0983 -2.8767 2.6252 42 1 1.5473 -2.3534 3.3243 43 1 1.6015 -4.6891 0.3380 44 1 2.7281 -4.2082 -3.3789 45 1 1.2112 -4.1467 -2.4405 46 1 2.6985 -5.7187 -4.9101 47 1 1.7898 -7.2447 -4.7923 48 1 0.9931 -5.9012 -6.9886 49 1 -2.2007 -4.2082 -9.6908 50 1 3.7814 -6.8932 -3.0359 51 1 2.5182 -7.9769 -2.3673 52 1 5.2266 -6.2792 -1.2074 53 1 4.6144 -6.1952 0.4619 54 1 4.5834 -7.7406 -0.4209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209807904.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:32 Heat of formation + Delta-G solvation = -112.251870 kcal Electronic energy + Delta-G solvation = -30877.942049 eV Core-core repulsion = 26847.830846 eV Total energy + Delta-G solvation = -4030.111203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.49029 -40.55373 -39.43950 -37.39735 -36.09093 -35.49570 -34.19939 -33.75330 -33.29223 -30.19064 -28.73253 -28.08399 -27.44749 -26.79770 -25.60386 -24.12016 -22.32822 -21.76466 -21.21275 -21.16854 -20.47790 -20.09316 -18.12192 -17.90243 -17.58185 -16.89391 -16.66113 -16.38161 -16.08706 -15.90239 -15.53364 -15.34018 -15.03395 -14.91808 -14.63945 -14.39971 -14.39386 -14.11667 -14.00609 -13.66217 -13.47073 -13.30627 -13.21736 -13.09140 -13.08433 -12.98252 -12.79575 -12.62165 -12.50608 -12.43207 -12.35034 -12.24992 -12.01055 -11.87494 -11.69108 -11.59943 -11.51877 -11.39388 -11.33491 -10.59327 -10.44510 -10.26286 -10.05766 -9.36902 -8.43292 -6.04147 1.27695 1.33359 1.42104 1.67158 1.94251 2.20932 2.22168 2.62725 3.11021 3.19285 3.51964 3.62379 3.67413 3.83391 3.92245 4.00206 4.10313 4.11293 4.22260 4.30374 4.31803 4.35827 4.41306 4.44025 4.46526 4.57520 4.66462 4.74967 4.79237 4.82046 4.85376 4.86671 4.91047 4.94261 4.99310 4.99792 5.06065 5.06939 5.13205 5.20508 5.30667 5.35697 5.35848 5.46802 5.50530 5.54007 5.61971 5.81174 5.89925 6.01032 6.57953 6.58372 6.86486 7.29969 7.37722 7.95696 8.74666 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010155 B = 0.002989 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.566859 B = 9365.713157 C =11441.472721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.139 4.139 4 C -0.086 4.086 5 C -0.112 4.112 6 H 0.105 0.895 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.578 6.578 10 N -0.710 5.710 11 C 0.146 3.854 12 H 0.085 0.915 13 C 0.039 3.961 14 N -0.511 5.511 15 C 0.044 3.956 16 C 0.450 3.550 17 O -0.607 6.607 18 N -0.593 5.593 19 C -0.328 4.328 20 H 0.053 0.947 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.966 3.034 24 H -0.253 1.253 25 H -0.275 1.275 26 H -0.234 1.234 27 C 0.037 3.963 28 C -0.087 4.087 29 H 0.100 0.900 30 C -0.135 4.135 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.412 0.588 44 H 0.025 0.975 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.128 0.872 48 H 0.389 0.611 49 H 0.279 0.721 50 H 0.063 0.937 51 H 0.105 0.895 52 H 0.054 0.946 53 H 0.062 0.938 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.957 -3.826 22.716 28.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 C -0.197 4.197 4 C -0.124 4.124 5 C -0.134 4.134 6 H 0.123 0.877 7 C -0.194 4.194 8 C 0.299 3.701 9 O -0.457 6.457 10 N -0.361 5.361 11 C 0.040 3.960 12 H 0.103 0.897 13 C -0.090 4.090 14 N -0.235 5.235 15 C -0.087 4.087 16 C 0.237 3.763 17 O -0.491 6.491 18 N -0.236 5.236 19 C -0.457 4.457 20 H 0.071 0.929 21 C -0.214 4.214 22 N -0.576 5.576 23 Si 0.786 3.214 24 H -0.177 1.177 25 H -0.200 1.200 26 H -0.158 1.158 27 C -0.090 4.090 28 C -0.106 4.106 29 H 0.118 0.882 30 C -0.192 4.192 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.249 0.751 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.146 0.854 48 H 0.224 0.776 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.124 0.876 52 H 0.073 0.927 53 H 0.081 0.919 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.322 -3.109 22.749 27.604 hybrid contribution 0.272 0.251 -1.748 1.786 sum 15.594 -2.858 21.001 26.313 Atomic orbital electron populations 1.21893 0.95152 1.01178 1.02197 1.21222 0.95702 0.96859 0.98981 1.21753 1.00602 0.95424 1.01899 1.21444 1.00996 0.92147 0.97829 1.21493 1.01125 0.96538 0.94201 0.87742 1.21758 1.02167 1.01149 0.94285 1.21323 0.81623 0.81842 0.85307 1.90658 1.39249 1.63957 1.51879 1.46017 1.46347 1.10080 1.33689 1.21823 0.94607 0.94517 0.85083 0.89689 1.23138 0.98308 0.90800 0.96758 1.64391 1.45954 1.06085 1.07095 1.22061 0.94327 1.02832 0.89527 1.20943 0.89456 0.83994 0.81886 1.90531 1.50083 1.50102 1.58357 1.42031 1.22797 1.52108 1.06622 1.18982 1.01013 1.33314 0.92422 0.92930 1.26123 0.99255 0.97669 0.98360 1.69808 1.28793 1.44173 1.14833 0.85354 0.79087 0.79186 0.77817 1.17746 1.19987 1.15755 1.23506 0.93049 0.98311 0.94095 1.22322 1.00244 0.90934 0.97121 0.88194 1.21725 0.93446 1.02982 1.01072 0.93893 0.93606 0.90591 0.93441 0.93250 0.93624 0.91098 0.88933 0.92390 0.90735 0.92546 0.89567 0.75053 0.95667 0.93267 0.90751 0.85428 0.77551 0.91129 0.91898 0.87633 0.92704 0.91913 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.85 71.98 0.64 -2.65 16 2 C -0.11 -2.63 2.71 -10.79 -0.03 -2.66 16 3 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 4 C -0.09 -1.65 3.78 30.59 0.12 -1.53 16 5 C -0.11 -2.03 2.62 -11.54 -0.03 -2.06 16 6 H 0.10 1.82 6.42 -2.38 -0.02 1.81 16 7 C -0.14 -1.51 9.05 71.98 0.65 -0.86 16 8 C 0.51 12.99 6.83 87.66 0.60 13.59 16 9 O -0.58 -19.60 13.75 -3.05 -0.04 -19.64 16 10 N -0.71 -15.66 4.92 -438.35 -2.16 -17.82 16 11 C 0.15 3.54 2.92 45.87 0.13 3.67 16 12 H 0.09 2.25 7.24 -2.39 -0.02 2.23 16 13 C 0.04 1.33 5.66 86.45 0.49 1.82 16 14 N -0.51 -15.71 4.91 -887.55 -4.36 -20.07 16 15 C 0.04 1.43 5.27 85.56 0.45 1.88 16 16 C 0.45 21.35 7.61 87.66 0.67 22.02 16 17 O -0.61 -35.16 14.86 -3.07 -0.05 -35.21 16 18 N -0.59 -29.17 5.09 -306.98 -1.56 -30.73 16 19 C -0.33 -19.88 10.16 84.04 0.85 -19.02 16 20 H 0.05 3.79 7.39 -2.91 -0.02 3.77 16 21 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 22 N -0.94 -57.72 13.96 21.66 0.30 -57.41 16 23 Si 0.97 39.84 27.74 68.60 1.90 41.75 16 24 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 27 C 0.04 0.73 5.96 86.65 0.52 1.24 16 28 C -0.09 -1.46 3.37 -9.59 -0.03 -1.49 16 29 H 0.10 1.50 7.75 -2.39 -0.02 1.48 16 30 C -0.13 -1.60 9.16 71.98 0.66 -0.94 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 1.08 6.70 -2.38 -0.02 1.06 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.54 6.02 -2.39 -0.01 1.53 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.24 7.90 -2.39 -0.02 1.22 16 40 H 0.07 0.63 7.71 -2.39 -0.02 0.61 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.66 16 43 H 0.41 6.89 7.90 -92.71 -0.73 6.16 16 44 H 0.02 0.92 7.52 -2.39 -0.02 0.90 16 45 H 0.05 2.10 7.31 -2.39 -0.02 2.08 16 46 H 0.07 2.12 7.73 -2.39 -0.02 2.10 16 47 H 0.13 3.24 8.08 -2.39 -0.02 3.22 16 48 H 0.39 15.83 5.76 -92.71 -0.53 15.30 16 49 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 50 H 0.06 1.06 7.93 -2.39 -0.02 1.04 16 51 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 53 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 54 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -85.20 419.94 0.41 -84.79 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -0.44 Total: 44.04 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.81 Total: 10.30 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -7.77 Total: -126.03 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.09 Total: -54.85 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 1.90 Total: 41.75 kcal Total: -85.20 0.41 -84.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209807904.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.463 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds