Wall clock time and date at job start Tue Mar 31 2020 23:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47390 * 2 1 4 4 C 1.53008 * 109.46970 * 119.99555 * 2 1 3 5 5 C 1.53002 * 109.46936 * 64.99902 * 4 2 1 6 6 H 1.09004 * 109.46977 * 305.00347 * 5 4 2 7 7 C 1.52996 * 109.47062 * 65.00310 * 5 4 2 8 8 C 1.50696 * 109.46924 * 185.00103 * 5 4 2 9 9 O 1.21285 * 120.00261 * 334.02889 * 8 5 4 10 10 N 1.34777 * 119.99855 * 154.02586 * 8 5 4 11 11 C 1.47022 * 125.65057 * 354.63707 * 10 8 5 12 12 C 1.54318 * 107.27188 * 178.90443 * 11 10 8 13 13 H 1.08996 * 110.72125 * 96.17519 * 12 11 10 14 14 C 1.53005 * 110.71976 * 219.44626 * 12 11 10 15 15 C 1.55162 * 102.94466 * 337.80880 * 12 11 10 16 16 H 1.08997 * 111.03412 * 277.41338 * 15 12 11 17 17 N 1.46899 * 111.00457 * 153.57823 * 15 12 11 18 18 C 1.46896 * 110.99935 * 161.35044 * 17 15 12 19 19 C 1.50701 * 109.47065 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99935 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99720 * 179.97438 * 19 18 17 22 22 C 1.37096 * 119.99640 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00173 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99899 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99912 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00084 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47324 * 90.00198 * 26 24 22 28 28 H 1.48499 * 109.47444 * 210.00342 * 26 24 22 29 29 H 1.48504 * 109.47161 * 330.00423 * 26 24 22 30 30 C 1.47431 * 125.64876 * 174.59568 * 10 8 5 31 31 H 1.09005 * 109.46578 * 60.00934 * 1 2 3 32 32 H 1.08993 * 109.47058 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47300 * 300.00459 * 1 2 3 34 34 H 1.09002 * 109.47457 * 239.99444 * 2 1 3 35 35 H 1.09001 * 109.47257 * 179.97438 * 3 2 1 36 36 H 1.09005 * 109.46678 * 299.99638 * 3 2 1 37 37 H 1.09002 * 109.47274 * 59.99332 * 3 2 1 38 38 H 1.09006 * 109.46750 * 305.00289 * 4 2 1 39 39 H 1.08996 * 109.47123 * 185.00038 * 4 2 1 40 40 H 1.08996 * 109.47199 * 184.12958 * 7 5 4 41 41 H 1.08998 * 109.46986 * 304.12917 * 7 5 4 42 42 H 1.09005 * 109.47235 * 64.12717 * 7 5 4 43 43 H 1.08994 * 109.87908 * 298.32435 * 11 10 8 44 44 H 1.08998 * 109.88005 * 59.48837 * 11 10 8 45 45 H 1.08994 * 109.47042 * 58.54859 * 14 12 11 46 46 H 1.08997 * 109.47068 * 178.55265 * 14 12 11 47 47 H 1.09005 * 109.46960 * 298.54648 * 14 12 11 48 48 H 1.00902 * 110.99601 * 285.30427 * 17 15 12 49 49 H 1.09003 * 109.47598 * 299.99978 * 18 17 15 50 50 H 1.09003 * 109.47104 * 59.99957 * 18 17 15 51 51 H 0.96992 * 120.00318 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99554 * 179.97438 * 25 24 22 53 53 H 1.09005 * 110.36152 * 323.00498 * 30 10 8 54 54 H 1.09001 * 110.36463 * 85.21482 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6352 -2.1954 1.1882 6 1 0.5562 -2.2706 1.0528 7 6 2.3448 -2.8708 0.0130 8 6 2.0292 -2.8782 2.4725 9 8 2.9495 -2.4442 3.1325 10 7 1.3588 -3.9712 2.8877 11 6 0.1609 -4.5357 2.2492 12 6 -0.2369 -5.7925 3.0515 13 1 -1.0084 -5.5545 3.7837 14 6 -0.7040 -6.9079 2.1140 15 6 1.0871 -6.1875 3.7576 16 1 1.7280 -6.7657 3.0921 17 7 0.8215 -6.9248 5.0001 18 6 2.0103 -7.6706 5.4341 19 6 1.7005 -8.4120 6.7090 20 8 0.5977 -8.3278 7.2068 21 7 2.6486 -9.1695 7.2954 22 6 2.3669 -9.8436 8.4554 23 1 1.3855 -9.7673 8.8996 24 6 3.3445 -10.6241 9.0603 25 7 3.0743 -11.2707 10.1720 26 14 5.0423 -10.7555 8.2924 27 1 5.9150 -9.6832 8.8344 28 1 5.6295 -12.0812 8.6134 29 1 4.9321 -10.6066 6.8190 30 6 1.7059 -4.7994 4.0570 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6767 1.9564 0.8899 38 1 1.6053 -0.2616 2.1371 39 1 3.1263 -0.6443 1.2953 40 1 2.0009 -3.9013 -0.0755 41 1 2.1179 -2.3318 -0.9068 42 1 3.4213 -2.8604 0.1840 43 1 -0.6501 -3.8080 2.2740 44 1 0.3846 -4.8096 1.2181 45 1 0.0939 -7.1504 1.4121 46 1 -0.9550 -7.7927 2.6988 47 1 -1.5837 -6.5749 1.5631 48 1 0.4989 -6.3038 5.7271 49 1 2.2955 -8.3825 4.6594 50 1 2.8316 -6.9755 5.6088 51 1 3.5304 -9.2372 6.8970 52 1 3.7567 -11.8158 10.5940 53 1 2.7884 -4.8801 4.1568 54 1 1.2726 -4.3765 4.9634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216099249.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:49 Heat of formation + Delta-G solvation = -113.394716 kcal Electronic energy + Delta-G solvation = -30004.234639 eV Core-core repulsion = 25974.073879 eV Total energy + Delta-G solvation = -4030.160760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50607 -40.35606 -39.35195 -37.75057 -36.26185 -35.61795 -33.83127 -33.68971 -33.27199 -30.25115 -28.00295 -27.98606 -27.63796 -27.30621 -25.84817 -24.38632 -22.86126 -21.61451 -21.20347 -20.71764 -20.27721 -19.81987 -18.33813 -17.72630 -17.43603 -16.98827 -16.71613 -16.41603 -16.25630 -15.79448 -15.51157 -15.13134 -14.89809 -14.78465 -14.63484 -14.53227 -14.37538 -14.24312 -14.00759 -13.91525 -13.75380 -13.38593 -13.27114 -13.17803 -13.03269 -12.97856 -12.88613 -12.79331 -12.42897 -12.34740 -12.18341 -12.10712 -12.00271 -11.86224 -11.64356 -11.61555 -11.53050 -11.41877 -11.37867 -10.75880 -10.45195 -10.26335 -9.76975 -9.38859 -8.42598 -6.03415 1.29053 1.34143 1.42979 1.54684 1.86515 1.93922 2.21496 2.67996 3.13752 3.22781 3.42891 3.58905 3.69428 3.76710 3.87584 3.94730 4.12862 4.15921 4.17425 4.23801 4.27153 4.35221 4.38083 4.44480 4.48470 4.55277 4.67144 4.69848 4.74617 4.77797 4.80483 4.85443 4.90080 4.95329 4.98193 5.05196 5.08748 5.13520 5.16270 5.23947 5.26817 5.33365 5.36184 5.49620 5.50796 5.52584 5.57219 5.88045 5.99815 6.25741 6.46457 6.57756 6.86427 7.08372 7.37962 7.93961 8.74899 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.001982 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.171917 B =14120.613789 C =14844.155305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.094 4.094 5 C -0.099 4.099 6 H 0.116 0.884 7 C -0.139 4.139 8 C 0.523 3.477 9 O -0.592 6.592 10 N -0.614 5.614 11 C 0.104 3.896 12 C -0.088 4.088 13 H 0.082 0.918 14 C -0.131 4.131 15 C 0.088 3.912 16 H 0.108 0.892 17 N -0.661 5.661 18 C 0.060 3.940 19 C 0.449 3.551 20 O -0.612 6.612 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.056 0.944 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.963 3.037 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.231 1.231 30 C 0.073 3.927 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.049 0.951 47 H 0.074 0.926 48 H 0.346 0.654 49 H 0.118 0.882 50 H 0.072 0.928 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.062 0.938 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 20.243 -30.274 36.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.133 4.133 5 C -0.120 4.120 6 H 0.134 0.866 7 C -0.196 4.196 8 C 0.314 3.686 9 O -0.472 6.472 10 N -0.347 5.347 11 C -0.018 4.018 12 C -0.107 4.107 13 H 0.101 0.899 14 C -0.189 4.189 15 C -0.023 4.023 16 H 0.126 0.874 17 N -0.292 5.292 18 C -0.073 4.073 19 C 0.237 3.763 20 O -0.497 6.497 21 N -0.232 5.232 22 C -0.458 4.458 23 H 0.075 0.925 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.783 3.217 27 H -0.184 1.184 28 H -0.199 1.199 29 H -0.154 1.154 30 C -0.052 4.052 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.093 0.907 48 H 0.166 0.834 49 H 0.136 0.864 50 H 0.089 0.911 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.081 0.919 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.828 19.901 -29.764 35.915 hybrid contribution 1.547 0.284 1.417 2.117 sum -1.281 20.185 -28.346 34.822 Atomic orbital electron populations 1.21923 0.94429 1.02461 1.01955 1.21174 0.96510 0.96032 0.97445 1.21850 1.00865 0.95999 1.01963 1.21458 1.00786 0.92557 0.98457 1.21384 1.03594 0.95688 0.91294 0.86607 1.21786 0.99743 1.01309 0.96777 1.21207 0.81008 0.78867 0.87521 1.90686 1.32487 1.65232 1.58822 1.48526 1.29890 1.27224 1.29106 1.22441 0.86356 0.95094 0.97949 1.22176 0.96280 0.94681 0.97580 0.89948 1.21645 1.01921 0.96999 0.98319 1.22956 0.97214 0.90214 0.91923 0.87414 1.60182 1.31201 1.30980 1.06802 1.21698 0.93038 0.98138 0.94392 1.20919 0.84725 0.82817 0.87839 1.90548 1.24676 1.67036 1.67394 1.42035 1.13544 1.44313 1.23356 1.19012 1.00006 1.25949 1.00845 0.92544 1.26097 1.03698 0.95242 0.96254 1.69802 1.36823 1.31059 1.19671 0.85391 0.76895 0.79037 0.80380 1.18422 1.19902 1.15391 1.23042 1.00674 0.92253 0.89279 0.91742 0.91518 0.93429 0.89513 0.93071 0.91531 0.93383 0.93362 0.92793 0.90985 0.88783 0.93646 0.89446 0.88369 0.91547 0.93171 0.90679 0.83419 0.86368 0.91060 0.77529 0.91139 0.91936 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.96 71.98 0.64 -0.51 16 2 C -0.09 -0.90 2.79 -10.79 -0.03 -0.93 16 3 C -0.15 -1.52 9.19 71.98 0.66 -0.86 16 4 C -0.09 -1.42 3.61 30.60 0.11 -1.31 16 5 C -0.10 -1.32 2.16 -11.54 -0.02 -1.35 16 6 H 0.12 1.01 5.48 -2.38 -0.01 1.00 16 7 C -0.14 -1.38 9.03 71.98 0.65 -0.73 16 8 C 0.52 11.58 6.94 87.66 0.61 12.19 16 9 O -0.59 -18.97 16.51 -3.04 -0.05 -19.02 16 10 N -0.61 -11.63 3.33 -811.81 -2.70 -14.33 16 11 C 0.10 1.20 5.68 86.73 0.49 1.69 16 12 C -0.09 -1.31 3.25 -9.60 -0.03 -1.34 16 13 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 14 C -0.13 -1.66 9.13 71.98 0.66 -1.01 16 15 C 0.09 1.72 2.77 46.31 0.13 1.85 16 16 H 0.11 1.88 7.81 -2.39 -0.02 1.86 16 17 N -0.66 -18.12 6.00 -488.41 -2.93 -21.05 16 18 C 0.06 1.77 6.04 85.56 0.52 2.29 16 19 C 0.45 20.08 7.82 87.66 0.69 20.77 16 20 O -0.61 -33.58 15.78 -3.07 -0.05 -33.63 16 21 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 22 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 23 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 25 N -0.93 -56.50 13.96 21.66 0.30 -56.19 16 26 Si 0.96 39.11 27.74 68.60 1.90 41.02 16 27 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 30 C 0.07 1.61 6.47 86.85 0.56 2.18 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.38 16 32 H 0.07 0.38 6.46 -2.39 -0.02 0.36 16 33 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.09 0.64 6.26 -2.39 -0.01 0.62 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 37 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.05 1.02 8.03 -2.39 -0.02 1.00 16 40 H 0.07 0.56 7.62 -2.39 -0.02 0.54 16 41 H 0.09 0.54 6.28 -2.39 -0.02 0.52 16 42 H 0.04 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.09 0.76 8.01 -2.39 -0.02 0.74 16 44 H 0.10 0.69 7.30 -2.39 -0.02 0.67 16 45 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 46 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 48 H 0.35 10.49 8.01 -89.69 -0.72 9.77 16 49 H 0.12 2.90 8.09 -2.39 -0.02 2.88 16 50 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.39 15.26 5.76 -92.71 -0.53 14.73 16 52 H 0.28 15.45 8.31 -92.71 -0.77 14.67 16 53 H 0.06 1.56 8.09 -2.38 -0.02 1.54 16 54 H 0.06 1.39 7.81 -2.39 -0.02 1.37 16 Total: -1.00 -81.47 423.00 1.44 -80.03 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.42 Total: 38.53 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.95 Total: 14.10 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -6.89 Total: -121.03 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.10 Total: -52.65 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.02 kcal Total: -81.47 1.44 -80.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216099249.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.361 kcal (2) G-P(sol) polarization free energy of solvation -81.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds