Wall clock time and date at job start Tue Mar 31 2020 23:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.45643 * 2 1 4 4 C 1.53041 * 109.46271 * 240.02782 * 2 1 3 5 5 C 1.53189 * 109.30975 * 178.61598 * 4 2 1 6 6 N 1.46917 * 108.77729 * 54.63519 * 5 4 2 7 7 C 1.34779 * 120.63358 * 126.36567 * 6 5 4 8 8 O 1.21280 * 120.00603 * 174.84530 * 7 6 5 9 9 C 1.50708 * 119.99774 * 354.84798 * 7 6 5 10 10 C 1.52998 * 109.47029 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46890 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47012 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00052 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00024 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00129 * 180.02562 * 14 12 11 16 16 C 1.46502 * 119.99881 * 359.97438 * 14 12 11 17 17 C 1.46926 * 118.73841 * 306.63934 * 6 5 4 18 18 H 1.08998 * 109.58970 * 293.56904 * 17 6 5 19 19 C 1.53003 * 109.58601 * 173.14478 * 17 6 5 20 20 N 1.46504 * 109.47167 * 73.27996 * 19 17 6 21 21 C 1.36935 * 120.00130 * 174.77726 * 20 19 17 22 22 H 1.08001 * 119.99863 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00279 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99764 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00324 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46951 * 60.00426 * 25 23 21 27 27 H 1.48506 * 109.47071 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47150 * 300.00164 * 25 23 21 29 29 C 1.52753 * 109.00672 * 53.31257 * 17 6 5 30 30 H 1.08994 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47208 * 299.97435 * 1 2 3 32 32 H 1.09002 * 109.46421 * 59.97371 * 1 2 3 33 33 H 1.08997 * 109.49729 * 58.66472 * 4 2 1 34 34 H 1.08994 * 109.51992 * 298.58521 * 4 2 1 35 35 H 1.08996 * 109.58538 * 294.84198 * 5 4 2 36 36 H 1.09001 * 109.69780 * 174.49125 * 5 4 2 37 37 H 1.09000 * 109.47347 * 59.99379 * 9 7 6 38 38 H 1.09002 * 109.46614 * 299.99674 * 9 7 6 39 39 H 1.09000 * 109.47587 * 59.99497 * 10 9 7 40 40 H 1.09002 * 109.47133 * 299.99327 * 10 9 7 41 41 H 1.09002 * 109.46812 * 299.99681 * 11 10 9 42 42 H 1.09000 * 109.47288 * 59.99472 * 11 10 9 43 43 H 1.08999 * 109.47210 * 359.97438 * 15 14 12 44 44 H 1.08994 * 109.47580 * 119.99808 * 15 14 12 45 45 H 1.09006 * 109.46962 * 240.00053 * 15 14 12 46 46 H 1.09001 * 109.46922 * 89.99943 * 16 14 12 47 47 H 1.08997 * 109.47136 * 209.99813 * 16 14 12 48 48 H 1.08999 * 109.47495 * 330.00249 * 16 14 12 49 49 H 1.08997 * 109.47227 * 193.27717 * 19 17 6 50 50 H 1.09004 * 109.47222 * 313.27804 * 19 17 6 51 51 H 0.97004 * 119.99799 * 354.77802 * 20 19 17 52 52 H 0.97003 * 120.00049 * 180.02562 * 24 23 21 53 53 H 1.08998 * 109.56554 * 185.55130 * 29 17 6 54 54 H 1.08999 * 109.39279 * 65.51653 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2500 5 6 3.5715 -0.6886 -1.2640 6 7 4.0679 -1.2487 0.0003 7 6 4.9615 -2.2577 0.0005 8 8 5.4343 -2.6489 1.0466 9 6 5.3732 -2.8999 -1.2993 10 6 6.3888 -4.0097 -1.0206 11 6 6.8062 -4.6621 -2.3401 12 6 7.8071 -5.7548 -2.0657 13 8 8.1528 -5.9885 -0.9269 14 7 8.3180 -6.4724 -3.0857 15 6 9.2904 -7.5351 -2.8189 16 6 7.8999 -6.1905 -4.4612 17 6 3.5671 -0.6921 1.2644 18 1 3.9097 0.3371 1.3717 19 6 4.0830 -1.5319 2.4347 20 7 5.5091 -1.2641 2.6368 21 6 6.1667 -1.8229 3.7000 22 1 5.6342 -2.4614 4.3893 23 6 7.5180 -1.5696 3.8912 24 7 8.1671 -0.7918 3.0508 25 14 8.4150 -2.3313 5.3419 26 1 8.3371 -3.8114 5.2503 27 1 9.8386 -1.9089 5.3208 28 1 7.7828 -1.8796 6.6073 29 6 2.0399 -0.7206 1.2502 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3632 0.5143 -0.8898 33 1 1.6574 -0.2209 -2.1398 34 1 1.6979 -1.7557 -1.2387 35 1 3.9144 0.3408 -1.3673 36 1 3.9439 -1.2832 -2.0983 37 1 5.8236 -2.1493 -1.9488 38 1 4.4965 -3.3246 -1.7883 39 1 5.9379 -4.7602 -0.3713 40 1 7.2655 -3.5854 -0.5313 41 1 5.9293 -5.0865 -2.8290 42 1 7.2569 -3.9118 -2.9898 43 1 9.4760 -7.5969 -1.7466 44 1 8.8958 -8.4866 -3.1751 45 1 10.2235 -7.3121 -3.3365 46 1 8.5623 -5.4420 -4.8960 47 1 7.9494 -7.1059 -5.0508 48 1 6.8771 -5.8138 -4.4602 49 1 3.5328 -1.2718 3.3389 50 1 3.9397 -2.5897 2.2138 51 1 5.9874 -0.6909 2.0175 52 1 9.1115 -0.6150 3.1842 53 1 1.6572 -0.2204 2.1398 54 1 1.6973 -1.7552 1.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264004743.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:30 Heat of formation + Delta-G solvation = -60.088556 kcal Electronic energy + Delta-G solvation = -31331.815749 eV Core-core repulsion = 27303.966517 eV Total energy + Delta-G solvation = -4027.849232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46059 -40.86712 -38.55654 -36.65462 -36.50632 -35.15559 -34.67763 -33.67259 -31.53394 -30.38174 -29.15886 -28.29697 -27.13423 -26.69013 -24.54082 -24.12669 -23.75665 -22.09288 -20.94294 -20.22555 -19.79762 -19.04733 -17.96576 -17.60256 -17.28051 -16.83649 -16.78136 -16.70407 -16.28468 -15.61115 -15.43937 -15.25805 -14.92487 -14.84670 -14.52505 -14.49075 -14.19130 -14.08374 -13.76907 -13.72955 -13.39028 -13.33550 -13.17155 -13.14285 -12.82686 -12.80004 -12.74996 -12.70378 -12.51888 -12.50303 -12.26672 -12.17573 -11.99965 -11.84842 -11.70252 -11.65380 -11.25032 -11.13672 -10.91323 -10.84232 -9.81400 -9.68463 -9.31334 -8.61979 -7.84982 -5.01954 1.37361 1.44541 1.48427 1.60852 2.04392 2.10866 2.30527 2.59882 3.47773 3.59432 3.66165 3.81128 3.90631 3.97756 4.06617 4.11983 4.16331 4.27887 4.36125 4.38463 4.41675 4.50865 4.51187 4.58801 4.61863 4.62322 4.66948 4.75818 4.79071 4.82170 4.82732 4.87353 4.90552 4.98192 4.99759 5.03763 5.06771 5.17735 5.19184 5.20809 5.28236 5.36472 5.44835 5.45793 5.50345 5.55042 5.62181 5.94145 6.34466 6.36653 6.79877 7.18658 7.42994 7.74066 8.25797 8.48073 9.40020 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006620 B = 0.004268 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4228.601660 B = 6559.281172 C =10313.244106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.121 4.121 5 C 0.103 3.897 6 N -0.615 5.615 7 C 0.458 3.542 8 O -0.515 6.515 9 C -0.118 4.118 10 C -0.082 4.082 11 C -0.120 4.120 12 C 0.493 3.507 13 O -0.599 6.599 14 N -0.626 5.626 15 C 0.074 3.926 16 C 0.070 3.930 17 C 0.149 3.851 18 H 0.053 0.947 19 C 0.167 3.833 20 N -0.699 5.699 21 C -0.210 4.210 22 H 0.057 0.943 23 C -0.084 4.084 24 N -0.973 5.973 25 Si 0.962 3.038 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.273 1.273 29 C -0.111 4.111 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.035 0.965 40 H 0.021 0.979 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.009 0.991 50 H 0.012 0.988 51 H 0.367 0.633 52 H 0.243 0.757 53 H 0.072 0.928 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 -4.192 -26.149 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.089 0.911 4 C -0.159 4.159 5 C -0.019 4.019 6 N -0.352 5.352 7 C 0.245 3.755 8 O -0.388 6.388 9 C -0.157 4.157 10 C -0.121 4.121 11 C -0.159 4.159 12 C 0.284 3.716 13 O -0.480 6.480 14 N -0.360 5.360 15 C -0.069 4.069 16 C -0.071 4.071 17 C 0.045 3.955 18 H 0.071 0.929 19 C 0.041 3.959 20 N -0.339 5.339 21 C -0.343 4.343 22 H 0.075 0.925 23 C -0.275 4.275 24 N -0.626 5.626 25 Si 0.793 3.207 26 H -0.222 1.222 27 H -0.219 1.219 28 H -0.199 1.199 29 C -0.150 4.150 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.114 0.886 49 H 0.027 0.973 50 H 0.030 0.970 51 H 0.199 0.801 52 H 0.052 0.948 53 H 0.091 0.909 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.396 -4.661 -24.855 28.617 hybrid contribution 1.443 -0.384 1.394 2.042 sum -11.953 -5.046 -23.461 26.810 Atomic orbital electron populations 1.21764 0.93632 1.01988 1.02300 1.21114 0.96623 0.99255 0.93822 0.91113 1.21958 0.93991 1.01503 0.98404 1.21988 0.95143 0.99676 0.85077 1.48118 1.44206 1.35876 1.07003 1.21595 0.79444 0.81681 0.92766 1.91236 1.52354 1.61742 1.33452 1.21628 1.00972 0.98371 0.94738 1.20879 0.97900 0.96938 0.96349 1.21686 0.99176 0.96346 0.98665 1.21591 0.82402 0.83424 0.84228 1.90756 1.62773 1.70055 1.24441 1.47988 1.43885 1.35568 1.08558 1.21743 0.92617 0.90481 1.02043 1.22139 1.02110 1.03405 0.79452 1.21126 0.94812 0.95898 0.83691 0.92945 1.20830 0.84685 0.96512 0.93916 1.42222 1.05493 1.56662 1.29549 1.19432 0.92541 1.20626 1.01737 0.92469 1.25313 0.97352 1.02719 1.02105 1.69807 1.08449 1.44157 1.40199 0.85349 0.77638 0.77565 0.80172 1.22182 1.21900 1.19875 1.21825 0.92032 1.01394 0.99773 0.92736 0.92942 0.91036 0.87977 0.91497 0.91535 0.87095 0.86878 0.85447 0.94579 0.96027 0.84616 0.85711 0.93122 0.89952 0.90538 0.91248 0.89016 0.88639 0.97335 0.96996 0.80146 0.94797 0.90924 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.99 0.66 -1.27 16 2 C -0.09 -1.58 2.68 -10.76 -0.03 -1.61 16 3 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.12 -1.70 5.36 30.67 0.16 -1.54 16 5 C 0.10 1.88 6.35 86.36 0.55 2.43 16 6 N -0.61 -18.93 2.98 -795.85 -2.37 -21.30 16 7 C 0.46 17.25 7.32 87.66 0.64 17.89 16 8 O -0.51 -27.13 9.71 -3.03 -0.03 -27.16 16 9 C -0.12 -2.96 4.05 29.85 0.12 -2.84 16 10 C -0.08 -2.71 3.79 30.59 0.12 -2.59 16 11 C -0.12 -2.47 4.25 29.85 0.13 -2.34 16 12 C 0.49 14.34 7.67 87.66 0.67 15.01 16 13 O -0.60 -25.91 15.31 -3.04 -0.05 -25.96 16 14 N -0.63 -12.54 3.27 -871.89 -2.85 -15.39 16 15 C 0.07 1.41 10.68 127.77 1.37 2.78 16 16 C 0.07 0.58 10.29 127.77 1.31 1.89 16 17 C 0.15 5.22 2.89 44.83 0.13 5.35 16 18 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 19 C 0.17 7.95 4.89 86.38 0.42 8.37 16 20 N -0.70 -41.30 3.20 -343.44 -1.10 -42.40 16 21 C -0.21 -13.76 9.73 84.03 0.82 -12.94 16 22 H 0.06 3.69 7.83 -2.91 -0.02 3.67 16 23 C -0.08 -5.57 5.50 84.86 0.47 -5.10 16 24 N -0.97 -67.30 13.06 21.65 0.28 -67.02 16 25 Si 0.96 53.64 29.55 68.60 2.03 55.67 16 26 H -0.29 -16.49 7.11 99.48 0.71 -15.78 16 27 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 28 H -0.27 -14.25 7.11 99.48 0.71 -13.55 16 29 C -0.11 -2.84 4.59 30.53 0.14 -2.70 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.36 5.93 -2.39 -0.01 1.34 16 37 H 0.11 2.18 7.73 -2.39 -0.02 2.16 16 38 H 0.13 2.03 7.91 -2.39 -0.02 2.02 16 39 H 0.04 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.02 0.95 8.06 -2.39 -0.02 0.93 16 41 H 0.14 1.58 7.40 -2.39 -0.02 1.56 16 42 H 0.12 1.79 8.11 -2.39 -0.02 1.77 16 43 H 0.05 1.36 6.90 -2.39 -0.02 1.34 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.14 8.14 -2.38 -0.02 1.13 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.09 0.40 8.07 -2.39 -0.02 0.38 16 48 H 0.10 0.40 6.44 -2.39 -0.02 0.39 16 49 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 50 H 0.01 0.64 6.36 -2.39 -0.02 0.62 16 51 H 0.37 23.08 7.23 -92.71 -0.67 22.41 16 52 H 0.24 16.36 8.31 -92.71 -0.77 15.59 16 53 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -100.82 415.90 3.78 -97.03 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.19 Total: 25.73 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 7.68 Total: 20.79 kcal Atomic # 7 Polarization: -140.07 SS G_CDS: -6.04 Total: -146.11 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.08 Total: -53.12 kcal Atomic # 14 Polarization: 53.64 SS G_CDS: 2.03 Total: 55.67 kcal Total: -100.82 3.78 -97.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264004743.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.944 kcal (2) G-P(sol) polarization free energy of solvation -100.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds