Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.32657 * 2 1 4 4 C 1.54904 * 110.46235 * 237.69865 * 2 1 3 5 5 C 1.55157 * 101.58552 * 204.10540 * 4 2 1 6 6 H 1.08995 * 110.72055 * 276.96195 * 5 4 2 7 7 N 1.46502 * 110.72375 * 153.86019 * 5 4 2 8 8 C 1.36927 * 120.00029 * 154.99991 * 7 5 4 9 9 H 1.08004 * 120.00329 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00016 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00275 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46864 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47041 * 119.99811 * 12 10 8 15 15 H 1.48496 * 109.47155 * 240.00108 * 12 10 8 16 16 C 1.54343 * 103.01877 * 35.30521 * 5 4 2 17 17 N 1.47027 * 107.26182 * 338.14305 * 16 5 4 18 18 C 1.34777 * 125.64300 * 178.85335 * 17 16 5 19 19 O 1.21278 * 119.99854 * 179.69318 * 18 17 16 20 20 C 1.50703 * 120.00161 * 359.68625 * 18 17 16 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46886 * 180.02562 * 21 20 18 23 23 C 1.53000 * 109.46886 * 180.02562 * 22 21 20 24 24 N 1.46909 * 109.46991 * 179.97438 * 23 22 21 25 25 C 1.47017 * 110.99821 * 293.63496 * 24 23 22 26 26 C 1.53097 * 109.26027 * 177.61031 * 25 24 23 27 27 O 1.43010 * 109.26003 * 56.84076 * 26 25 24 28 28 C 1.43021 * 113.74191 * 301.33916 * 27 26 25 29 29 C 1.47013 * 111.00013 * 169.99918 * 24 23 22 30 30 H 1.09002 * 109.47105 * 299.22623 * 1 2 3 31 31 H 1.09004 * 109.47014 * 59.21815 * 1 2 3 32 32 H 1.08993 * 109.47263 * 179.21833 * 1 2 3 33 33 H 1.09001 * 111.00439 * 322.17663 * 4 2 1 34 34 H 1.08996 * 111.00805 * 85.98955 * 4 2 1 35 35 H 0.97000 * 119.99861 * 335.00643 * 7 5 4 36 36 H 0.96994 * 120.00311 * 179.97438 * 11 10 8 37 37 H 1.09000 * 109.98935 * 218.66835 * 16 5 4 38 38 H 1.09000 * 109.77621 * 97.49398 * 16 5 4 39 39 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 40 40 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 41 41 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 42 42 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 43 43 H 1.09001 * 109.47109 * 299.99380 * 22 21 20 44 44 H 1.09002 * 109.47508 * 59.99571 * 22 21 20 45 45 H 1.08992 * 109.47098 * 299.99158 * 23 22 21 46 46 H 1.09001 * 109.47583 * 60.00267 * 23 22 21 47 47 H 1.09010 * 109.50543 * 297.53961 * 25 24 23 48 48 H 1.09003 * 109.50925 * 57.66783 * 25 24 23 49 49 H 1.09003 * 109.50013 * 296.91386 * 26 25 24 50 50 H 1.08999 * 109.50961 * 176.78053 * 26 25 24 51 51 H 1.09003 * 109.50061 * 298.73164 * 28 27 26 52 52 H 1.09003 * 109.50662 * 178.60462 * 28 27 26 53 53 H 1.08998 * 109.50585 * 302.32503 * 29 24 23 54 54 H 1.08994 * 109.50564 * 62.45813 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0715 -0.7755 -1.2267 5 6 3.4803 -1.1971 -0.7318 6 1 4.1966 -0.3876 -0.8723 7 7 3.9300 -2.4099 -1.4196 8 6 5.2685 -2.6713 -1.5417 9 1 5.9928 -1.9837 -1.1306 10 6 5.6947 -3.8202 -2.1939 11 7 4.8121 -4.6585 -2.6946 12 14 7.5208 -4.1765 -2.3611 13 1 8.2985 -3.0874 -1.7176 14 1 7.8359 -5.4675 -1.6982 15 1 7.8795 -4.2583 -3.7998 16 6 3.2539 -1.4695 0.7705 17 7 2.0430 -0.7371 1.1691 18 6 1.4960 -0.7353 2.4008 19 8 0.4943 -0.0873 2.6185 20 6 2.1290 -1.5387 3.5077 21 6 1.3170 -1.3648 4.7927 22 6 1.9600 -2.1799 5.9165 23 6 1.1476 -2.0065 7.2013 24 7 1.7647 -2.7896 8.2803 25 6 1.6695 -4.2308 8.0060 26 6 2.3753 -5.0051 9.1223 27 8 1.7935 -4.6538 10.3807 28 6 1.8692 -3.2574 10.6803 29 6 1.1582 -2.4655 9.5797 30 1 -0.3633 0.5018 0.8969 31 1 -0.3633 0.5260 -0.8829 32 1 -0.3633 -1.0275 -0.0140 33 1 1.4550 -1.6487 -1.4402 34 1 2.1414 -0.1265 -2.0996 35 1 3.2795 -3.0276 -1.7887 36 1 5.1099 -5.4611 -3.1506 37 1 4.1085 -1.1144 1.3465 38 1 3.1118 -2.5377 0.9342 39 1 3.1488 -1.1904 3.6719 40 1 2.1454 -2.5922 3.2283 41 1 1.3002 -0.3113 5.0722 42 1 0.2974 -1.7132 4.6282 43 1 1.9771 -3.2334 5.6373 44 1 2.9795 -1.8310 6.0809 45 1 1.1302 -0.9532 7.4808 46 1 0.1282 -2.3558 7.0367 47 1 0.6207 -4.5253 7.9658 48 1 2.1471 -4.4520 7.0514 49 1 3.4352 -4.7506 9.1278 50 1 2.2581 -6.0755 8.9533 51 1 2.9144 -2.9522 10.7310 52 1 1.3860 -3.0639 11.6380 53 1 1.2627 -1.3981 9.7740 54 1 0.1014 -2.7317 9.5646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284014015.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = -92.455399 kcal Electronic energy + Delta-G solvation = -29651.846272 eV Core-core repulsion = 25622.593509 eV Total energy + Delta-G solvation = -4029.252763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.25570 -40.54874 -38.84392 -37.46665 -35.96329 -35.16705 -33.27655 -32.93454 -32.16029 -30.64205 -30.04961 -27.71969 -26.61600 -25.82545 -25.04998 -24.52722 -22.69797 -21.90839 -21.60908 -21.33948 -19.80230 -19.20006 -17.89602 -17.50479 -17.44448 -17.19140 -16.79676 -16.65712 -16.20219 -16.01155 -15.87801 -15.48745 -15.42621 -15.11185 -15.08568 -14.75021 -14.40016 -14.23250 -13.86150 -13.53553 -13.42277 -13.26967 -13.20242 -13.03227 -12.91473 -12.83810 -12.66342 -12.46233 -12.40027 -12.31467 -12.22306 -12.09741 -12.05382 -11.88265 -11.70966 -11.60000 -11.51351 -11.33550 -11.01837 -10.68414 -10.50785 -9.58784 -9.43335 -9.05918 -7.93785 -5.23779 1.50922 1.52059 1.61200 1.66656 2.03683 2.57799 2.71221 2.95322 3.38113 3.45227 3.78304 3.83709 3.90309 3.90859 3.92320 3.98131 4.01169 4.15928 4.19202 4.20276 4.28487 4.32379 4.38734 4.42945 4.51538 4.52852 4.55829 4.57592 4.68348 4.71475 4.74135 4.76522 4.80810 4.83427 4.84565 4.90603 4.92587 5.00121 5.04483 5.13073 5.17583 5.26058 5.30619 5.33714 5.41949 5.55715 5.56800 5.93302 5.95950 6.16343 6.27080 6.61194 7.21337 7.34724 8.06324 8.29973 9.29357 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.002157 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.691579 B =12977.147002 C =15407.515541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 H 0.084 0.916 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.073 0.927 7 N -0.725 5.725 8 C -0.239 4.239 9 H 0.083 0.917 10 C -0.072 4.072 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.263 1.263 14 H -0.296 1.296 15 H -0.298 1.298 16 C 0.088 3.912 17 N -0.613 5.613 18 C 0.522 3.478 19 O -0.576 6.576 20 C -0.132 4.132 21 C -0.090 4.090 22 C -0.107 4.107 23 C 0.059 3.941 24 N -0.545 5.545 25 C 0.014 3.986 26 C 0.061 3.939 27 O -0.408 6.408 28 C 0.061 3.939 29 C 0.016 3.984 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.375 0.625 36 H 0.250 0.750 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.030 0.970 47 H 0.034 0.966 48 H 0.096 0.904 49 H 0.062 0.938 50 H 0.110 0.890 51 H 0.062 0.938 52 H 0.114 0.886 53 H 0.099 0.901 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 6.649 22.104 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.102 0.898 4 C -0.165 4.165 5 C 0.053 3.947 6 H 0.091 0.909 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.101 0.899 10 C -0.265 4.265 11 N -0.619 5.619 12 Si 0.799 3.201 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.225 1.225 16 C -0.038 4.038 17 N -0.347 5.347 18 C 0.312 3.688 19 O -0.457 6.457 20 C -0.171 4.171 21 C -0.128 4.128 22 C -0.144 4.144 23 C -0.069 4.069 24 N -0.270 5.270 25 C -0.114 4.114 26 C -0.015 4.015 27 O -0.327 6.327 28 C -0.016 4.016 29 C -0.112 4.112 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.207 0.793 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.114 0.886 49 H 0.080 0.920 50 H 0.128 0.872 51 H 0.080 0.920 52 H 0.132 0.868 53 H 0.117 0.883 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.832 6.999 22.445 24.484 hybrid contribution -0.128 -0.871 -0.901 1.260 sum -6.960 6.128 21.544 23.455 Atomic orbital electron populations 1.22056 0.93916 1.01743 1.03397 1.21927 0.95084 0.95661 0.84178 0.89832 1.23069 0.95953 1.00198 0.97301 1.21377 0.94656 0.89316 0.89313 0.90922 1.42526 1.04251 1.23526 1.66035 1.19690 0.84683 1.03934 1.28777 0.89940 1.25529 1.01429 0.97856 1.01679 1.69813 1.33928 1.13957 1.44168 0.85136 0.80601 0.77628 0.76756 1.18716 1.22349 1.22507 1.22938 0.85992 0.95954 0.98913 1.48742 1.28201 1.48306 1.09402 1.20891 0.83607 0.81531 0.82742 1.90587 1.26821 1.45826 1.82482 1.21676 1.01530 1.00888 0.93019 1.21161 0.98474 1.00814 0.92400 1.21505 0.99971 1.00308 0.92649 1.22108 0.95500 0.98422 0.90850 1.62254 1.56645 1.05525 1.02585 1.22873 0.99743 0.88154 1.00669 1.22776 0.96869 0.99975 0.81901 1.87955 1.81243 1.25460 1.38046 1.22809 1.00830 0.80006 0.97917 1.22836 0.96693 1.01939 0.89694 0.91165 0.90294 0.94093 0.91749 0.88787 0.79280 0.94087 0.90876 0.92439 0.87538 0.88574 0.91733 0.92638 0.91666 0.90616 0.90008 0.95192 0.94777 0.88614 0.91988 0.87222 0.91995 0.86814 0.88276 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 8.71 71.98 0.63 -3.52 16 2 C 0.13 3.72 3.76 45.46 0.17 3.90 16 3 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.13 -3.77 6.14 31.98 0.20 -3.57 16 5 C 0.16 5.72 3.61 46.19 0.17 5.89 16 6 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 7 N -0.72 -33.26 5.15 -317.30 -1.64 -34.90 16 8 C -0.24 -12.18 9.96 84.03 0.84 -11.35 16 9 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 11 N -0.97 -56.67 13.06 21.65 0.28 -56.38 16 12 Si 0.97 43.77 29.55 68.60 2.03 45.80 16 13 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 14 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 16 C 0.09 2.74 6.25 86.73 0.54 3.28 16 17 N -0.61 -17.96 3.24 -788.12 -2.56 -20.52 16 18 C 0.52 15.17 7.63 87.66 0.67 15.84 16 19 O -0.58 -19.48 13.64 -3.02 -0.04 -19.52 16 20 C -0.13 -2.91 4.89 29.85 0.15 -2.77 16 21 C -0.09 -1.79 4.50 30.59 0.14 -1.65 16 22 C -0.11 -1.74 5.15 30.59 0.16 -1.58 16 23 C 0.06 0.94 4.96 86.30 0.43 1.36 16 24 N -0.54 -8.81 4.73 -895.19 -4.23 -13.04 16 25 C 0.01 0.22 5.44 86.31 0.47 0.68 16 26 C 0.06 0.92 7.01 72.01 0.50 1.43 16 27 O -0.41 -7.43 10.83 -148.98 -1.61 -9.04 16 28 C 0.06 0.82 7.01 72.01 0.50 1.32 16 29 C 0.02 0.23 5.65 86.31 0.49 0.72 16 30 H 0.07 2.12 5.89 -2.39 -0.01 2.11 16 31 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 34 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.37 18.89 7.76 -92.71 -0.72 18.17 16 36 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.06 1.99 8.03 -2.39 -0.02 1.97 16 39 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 43 H 0.06 1.06 6.51 -2.39 -0.02 1.04 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 46 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 47 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.10 1.40 6.38 -2.39 -0.02 1.38 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 54 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -63.94 418.83 -1.12 -65.05 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.14 Total: 36.01 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.51 Total: 6.54 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -8.14 Total: -124.84 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.65 Total: -28.56 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.94 -1.12 -65.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284014015.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.401 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds