Wall clock time and date at job start Tue Mar 31 2020 23:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 O 1.21279 * 120.00072 * 119.99863 * 4 2 1 6 6 N 1.34777 * 119.99762 * 300.00068 * 4 2 1 7 7 C 1.46504 * 119.99858 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00258 * 180.02562 * 6 4 2 9 9 C 1.52998 * 109.47322 * 89.99349 * 8 6 4 10 10 C 1.53005 * 109.47496 * 300.00316 * 9 8 6 11 11 C 1.53004 * 109.47024 * 60.00438 * 9 8 6 12 12 C 1.52996 * 109.47099 * 180.02562 * 9 8 6 13 13 N 1.46901 * 109.47158 * 179.97438 * 12 9 8 14 14 C 1.46899 * 111.00226 * 180.02562 * 13 12 9 15 15 C 1.50702 * 109.47235 * 180.02562 * 14 13 12 16 16 O 1.21285 * 120.00104 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99655 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99632 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99877 * 0.02562 * 18 17 15 20 20 C 1.38946 * 119.99934 * 179.97438 * 18 17 15 21 21 N 1.31417 * 120.00049 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47105 * 89.99866 * 22 20 18 24 24 H 1.48497 * 109.47172 * 209.99915 * 22 20 18 25 25 H 1.48497 * 109.47101 * 329.99639 * 22 20 18 26 26 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 27 27 C 1.53006 * 117.49936 * 128.61977 * 26 2 1 28 28 C 1.53000 * 60.00083 * 252.51494 * 27 26 2 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46944 * 90.00712 * 7 6 4 33 33 H 1.09001 * 109.47272 * 209.99997 * 7 6 4 34 34 H 1.08996 * 109.47264 * 330.00264 * 7 6 4 35 35 H 1.08997 * 109.47484 * 209.99674 * 8 6 4 36 36 H 1.09004 * 109.47079 * 329.99531 * 8 6 4 37 37 H 1.09002 * 109.46859 * 59.99865 * 10 9 8 38 38 H 1.09001 * 109.47197 * 179.97438 * 10 9 8 39 39 H 1.08993 * 109.46804 * 300.00239 * 10 9 8 40 40 H 1.08997 * 109.47082 * 60.00103 * 11 9 8 41 41 H 1.09001 * 109.47233 * 179.97438 * 11 9 8 42 42 H 1.09002 * 109.47092 * 299.99989 * 11 9 8 43 43 H 1.08997 * 109.47528 * 300.00215 * 12 9 8 44 44 H 1.08999 * 109.47347 * 60.00694 * 12 9 8 45 45 H 1.00903 * 110.99688 * 56.05000 * 13 12 9 46 46 H 1.08998 * 109.47256 * 300.00658 * 14 13 12 47 47 H 1.09002 * 109.47094 * 60.00529 * 14 13 12 48 48 H 0.96995 * 120.00737 * 359.97438 * 17 15 14 49 49 H 0.96998 * 119.99897 * 180.02562 * 21 20 18 50 50 H 1.09001 * 115.55333 * 274.33650 * 26 2 1 51 51 H 1.08996 * 117.49984 * 0.02562 * 27 26 2 52 52 H 1.09004 * 117.49682 * 145.02599 * 27 26 2 53 53 H 1.09004 * 117.49652 * 252.51261 * 28 27 26 54 54 H 1.08993 * 117.49900 * 107.49053 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1955 -0.9402 3.6508 9 6 3.5431 -0.3473 4.0669 10 6 4.5509 -0.5231 2.9291 11 6 3.3727 1.1424 4.3716 12 6 4.0538 -1.0686 5.3158 13 7 5.3481 -0.4998 5.7149 14 6 5.8706 -1.1698 6.9133 15 6 7.1958 -0.5604 7.2920 16 8 7.6592 0.3435 6.6293 17 7 7.8660 -1.0199 8.3673 18 6 9.0719 -0.4658 8.7116 19 1 9.4845 0.3391 8.1214 20 6 9.7627 -0.9391 9.8204 21 7 10.9188 -0.4083 10.1501 22 14 9.0486 -2.3308 10.8416 23 1 9.5195 -3.6321 10.3030 24 1 9.4930 -2.1887 12.2514 25 1 7.5658 -2.2779 10.7824 26 6 2.0400 -0.7213 -1.2492 27 6 3.0742 0.0051 -2.1117 28 6 1.6357 -0.1496 -2.6096 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.1832 0.6439 2.6222 33 1 1.1227 1.4667 3.5086 34 1 1.0288 1.6002 1.7362 35 1 1.4776 -0.8150 4.4614 36 1 2.3169 -2.0015 3.4337 37 1 4.1872 -0.0095 2.0391 38 1 5.5109 -0.1003 3.2254 39 1 4.6723 -1.5842 2.7120 40 1 2.6548 1.2676 5.1822 41 1 4.3327 1.5647 4.6685 42 1 3.0090 1.6560 3.4816 43 1 3.3361 -0.9438 6.1265 44 1 4.1755 -2.1297 5.0983 45 1 5.2761 0.4962 5.8596 46 1 5.1657 -1.0458 7.7354 47 1 6.0044 -2.2316 6.7066 48 1 7.4953 -1.7425 8.8976 49 1 11.4011 -0.7390 10.9240 50 1 2.1267 -1.8045 -1.1642 51 1 3.3915 0.9967 -1.7890 52 1 3.8416 -0.6002 -2.5942 53 1 1.4569 -0.8567 -3.4196 54 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485248501.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:13 Heat of formation + Delta-G solvation = -65.448194 kcal Electronic energy + Delta-G solvation = -30310.167557 eV Core-core repulsion = 26282.085914 eV Total energy + Delta-G solvation = -4028.081643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53309 -40.34396 -39.13758 -37.95549 -36.54590 -35.97347 -34.59589 -33.73901 -32.67092 -29.04576 -28.87154 -28.05274 -27.20401 -26.51940 -25.41470 -24.35646 -23.15103 -21.80405 -21.32660 -20.41505 -20.08294 -19.55740 -18.08536 -17.84537 -17.35815 -17.17009 -16.81061 -16.63792 -15.96503 -15.80437 -15.51319 -15.32326 -15.03359 -14.91477 -14.65219 -14.63957 -14.38397 -14.20875 -14.13324 -13.72824 -13.65657 -13.40821 -13.22258 -13.08644 -12.90897 -12.85159 -12.59598 -12.47457 -12.42419 -12.40197 -12.23729 -12.00427 -11.93384 -11.78504 -11.64109 -11.55121 -11.52144 -11.26813 -10.89262 -10.56123 -10.43379 -10.25744 -9.52202 -9.25455 -8.42169 -6.03198 1.29267 1.35344 1.43888 1.72073 1.94741 2.07017 2.22360 2.75245 2.91319 3.14044 3.44995 3.57509 3.66711 3.85130 3.91623 3.97085 4.01024 4.13731 4.17601 4.24560 4.38268 4.40670 4.45592 4.47243 4.49794 4.53638 4.58426 4.66115 4.75504 4.77324 4.82608 4.84509 4.85747 4.87344 4.95797 5.00657 5.08073 5.11425 5.12290 5.20659 5.24640 5.32511 5.37935 5.48185 5.49226 5.52291 5.63188 5.90478 6.07947 6.43288 6.47969 6.59237 6.87072 7.29065 7.38793 7.95593 8.75532 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.001882 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.248103 B =14872.292741 C =15253.847765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 H 0.108 0.892 4 C 0.511 3.489 5 O -0.575 6.575 6 N -0.608 5.608 7 C 0.060 3.940 8 C 0.129 3.871 9 C -0.069 4.069 10 C -0.107 4.107 11 C -0.143 4.143 12 C 0.074 3.926 13 N -0.686 5.686 14 C 0.062 3.938 15 C 0.448 3.552 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.330 4.330 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.230 1.230 26 C -0.150 4.150 27 C -0.191 4.191 28 C -0.156 4.156 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.345 0.655 46 H 0.080 0.920 47 H 0.109 0.891 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.085 0.915 53 H 0.099 0.901 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.003 -0.049 -17.440 36.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 H 0.126 0.874 4 C 0.301 3.699 5 O -0.455 6.455 6 N -0.340 5.340 7 C -0.081 4.081 8 C 0.006 3.994 9 C -0.071 4.071 10 C -0.165 4.165 11 C -0.200 4.200 12 C -0.055 4.055 13 N -0.320 5.320 14 C -0.070 4.070 15 C 0.236 3.764 16 O -0.499 6.499 17 N -0.233 5.233 18 C -0.459 4.459 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.153 1.153 26 C -0.169 4.169 27 C -0.228 4.228 28 C -0.193 4.193 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.165 0.835 46 H 0.097 0.903 47 H 0.127 0.873 48 H 0.225 0.775 49 H 0.089 0.911 50 H 0.105 0.895 51 H 0.116 0.884 52 H 0.103 0.897 53 H 0.117 0.883 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -30.814 -0.322 -18.235 35.806 hybrid contribution 0.500 -0.352 1.328 1.461 sum -30.314 -0.674 -16.908 34.717 Atomic orbital electron populations 1.22014 0.90739 1.02853 1.04849 1.20848 0.98864 0.99724 0.89988 0.87386 1.21049 0.79172 0.84229 0.85486 1.90694 1.39240 1.28582 1.86950 1.47799 1.51129 1.29999 1.05033 1.22403 0.94780 0.86336 1.04578 1.21432 0.94214 0.96427 0.87340 1.20888 0.95120 0.96575 0.94484 1.21511 0.98288 1.00035 0.96640 1.21971 1.01601 0.94189 1.02223 1.21965 0.88569 0.98945 0.96051 1.60031 1.28020 1.08972 1.34982 1.21619 0.92028 1.00008 0.93345 1.21021 0.88605 0.85351 0.81434 1.90538 1.71206 1.33920 1.54249 1.42031 1.19419 1.34805 1.27015 1.19009 0.96685 1.18137 1.12045 0.92779 1.26137 0.95835 1.01336 0.98140 1.69809 1.15533 1.43881 1.28271 0.85347 0.80408 0.77786 0.77857 1.18343 1.19868 1.15336 1.21986 1.04792 0.98835 0.91291 1.23071 0.93295 1.01951 1.04473 1.23047 0.97037 1.03500 0.95710 0.89867 0.89241 0.93279 0.90192 0.89492 0.89610 0.87646 0.91692 0.94460 0.94295 0.94780 0.90729 0.94036 0.91319 0.92708 0.91126 0.83494 0.90273 0.87292 0.77455 0.91131 0.89473 0.88369 0.89654 0.88281 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.67 71.98 0.62 -0.50 16 2 C -0.07 -0.97 2.07 -11.54 -0.02 -1.00 16 3 H 0.11 1.13 7.16 -2.39 -0.02 1.12 16 4 C 0.51 10.07 5.48 87.66 0.48 10.55 16 5 O -0.58 -16.78 13.42 -3.03 -0.04 -16.82 16 6 N -0.61 -8.73 2.40 -846.75 -2.03 -10.77 16 7 C 0.06 0.37 7.71 127.77 0.98 1.35 16 8 C 0.13 2.09 4.60 86.38 0.40 2.49 16 9 C -0.07 -1.40 0.67 -52.18 -0.03 -1.44 16 10 C -0.11 -3.02 6.98 71.98 0.50 -2.52 16 11 C -0.14 -2.49 6.90 71.98 0.50 -1.99 16 12 C 0.07 1.61 4.65 86.30 0.40 2.01 16 13 N -0.69 -20.93 5.34 -517.94 -2.76 -23.69 16 14 C 0.06 1.96 6.17 85.56 0.53 2.49 16 15 C 0.45 20.80 7.82 87.66 0.69 21.48 16 16 O -0.61 -35.06 15.78 -3.05 -0.05 -35.11 16 17 N -0.59 -28.49 5.09 -306.99 -1.56 -30.05 16 18 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 19 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 21 N -0.93 -57.07 13.96 21.66 0.30 -56.77 16 22 Si 0.97 39.31 27.74 68.60 1.90 41.22 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 26 C -0.15 -2.49 4.76 -10.79 -0.05 -2.54 16 27 C -0.19 -2.97 10.18 30.60 0.31 -2.66 16 28 C -0.16 -1.76 9.73 30.60 0.30 -1.46 16 29 H 0.08 0.39 7.29 -2.39 -0.02 0.38 16 30 H 0.09 0.34 4.53 -2.39 -0.01 0.33 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.08 0.20 6.95 -2.39 -0.02 0.19 16 33 H 0.09 0.42 6.04 -2.39 -0.01 0.41 16 34 H 0.09 0.33 6.01 -2.39 -0.01 0.32 16 35 H 0.11 1.08 8.07 -2.39 -0.02 1.06 16 36 H 0.06 1.35 7.42 -2.38 -0.02 1.33 16 37 H 0.04 1.03 6.15 -2.39 -0.01 1.02 16 38 H 0.04 1.29 7.60 -2.39 -0.02 1.27 16 39 H 0.03 1.08 7.73 -2.39 -0.02 1.06 16 40 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 41 H 0.04 0.95 6.57 -2.39 -0.02 0.93 16 42 H 0.07 1.04 5.99 -2.39 -0.01 1.02 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.34 11.08 6.47 -89.69 -0.58 10.50 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 48 H 0.39 15.51 5.76 -92.71 -0.53 14.98 16 49 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.09 1.94 7.47 -2.39 -0.02 1.92 16 51 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 52 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 54 H 0.11 0.82 7.61 -2.39 -0.02 0.81 16 Total: -1.00 -84.35 410.13 2.41 -81.94 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -0.26 Total: 43.06 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.92 Total: 7.00 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -6.06 Total: -121.28 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.22 kcal Total: -84.35 2.41 -81.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485248501.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.487 kcal (2) G-P(sol) polarization free energy of solvation -84.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds