Wall clock time and date at job start Tue Mar 31 2020 23:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99935 * 2 1 4 4 N 1.34776 * 120.00187 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00112 * 179.97438 * 4 2 1 6 6 H 1.08997 * 109.47005 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47149 * 59.99912 * 5 4 2 8 8 C 1.52996 * 109.47563 * 64.99843 * 7 5 4 9 9 C 1.53001 * 109.47563 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.46771 * 65.00057 * 9 8 7 11 11 C 1.52995 * 109.47069 * 184.99932 * 9 8 7 12 12 C 1.50693 * 109.47082 * 299.99862 * 5 4 2 13 13 O 1.21283 * 120.00622 * 20.00082 * 12 5 4 14 14 N 1.34783 * 119.99831 * 199.99800 * 12 5 4 15 15 C 1.46500 * 119.99799 * 179.97438 * 14 12 5 16 16 H 1.09004 * 110.64237 * 328.14378 * 15 14 12 17 17 C 1.55156 * 110.87066 * 91.39236 * 15 14 12 18 18 C 1.54911 * 101.58152 * 153.93447 * 17 15 14 19 19 N 1.47423 * 104.83513 * 322.99300 * 18 17 15 20 20 C 1.36930 * 125.65125 * 204.17519 * 19 18 17 21 21 H 1.08006 * 120.00203 * 161.43034 * 20 19 18 22 22 C 1.38815 * 119.99914 * 341.43288 * 20 19 18 23 23 N 1.31622 * 119.99858 * 157.62541 * 22 20 19 24 24 Si 1.86794 * 120.00043 * 337.62994 * 22 20 19 25 25 H 1.48501 * 109.47283 * 84.53728 * 24 22 20 26 26 H 1.48506 * 109.47118 * 204.53906 * 24 22 20 27 27 H 1.48499 * 109.47227 * 324.53852 * 24 22 20 28 28 C 1.47022 * 108.70295 * 24.12729 * 19 18 17 29 29 H 1.09002 * 109.88581 * 239.52857 * 28 19 18 30 30 C 1.52994 * 109.88563 * 118.35938 * 28 19 18 31 31 H 1.09004 * 109.46842 * 240.00122 * 1 2 3 32 32 H 1.09003 * 109.47361 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.47405 * 119.99651 * 1 2 3 34 34 H 0.97000 * 119.99712 * 359.97438 * 4 2 1 35 35 H 1.09003 * 109.47030 * 185.00323 * 7 5 4 36 36 H 1.09010 * 109.47026 * 304.99823 * 7 5 4 37 37 H 1.09002 * 109.46818 * 300.00236 * 8 7 5 38 38 H 1.09004 * 109.47227 * 59.99587 * 8 7 5 39 39 H 1.08996 * 109.46742 * 305.00142 * 9 8 7 40 40 H 1.08993 * 109.46742 * 180.02562 * 10 9 8 41 41 H 1.08999 * 109.46731 * 299.99880 * 10 9 8 42 42 H 1.08999 * 109.47021 * 60.00184 * 10 9 8 43 43 H 1.08999 * 109.47492 * 60.00297 * 11 9 8 44 44 H 1.09003 * 109.46802 * 180.02562 * 11 9 8 45 45 H 1.08999 * 109.47451 * 300.00262 * 11 9 8 46 46 H 0.96993 * 120.00293 * 0.02562 * 14 12 5 47 47 H 1.08997 * 111.00588 * 272.00581 * 17 15 14 48 48 H 1.08997 * 111.00479 * 35.82598 * 17 15 14 49 49 H 1.08998 * 110.36843 * 81.82869 * 18 17 15 50 50 H 1.08998 * 110.36833 * 204.03917 * 18 17 15 51 51 H 0.97001 * 120.00015 * 180.02562 * 23 22 20 52 52 H 1.09005 * 109.46855 * 302.19221 * 30 28 19 53 53 H 1.08998 * 109.47185 * 62.19462 * 30 28 19 54 54 H 1.08999 * 109.47538 * 182.19511 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 1 4.0092 -2.1948 -0.0010 7 6 4.1564 -0.4462 1.2481 8 6 3.7521 -1.2365 2.4942 9 6 4.2621 -0.5151 3.7434 10 6 3.5573 0.8366 3.8752 11 6 3.9674 -1.3666 4.9799 12 6 4.1477 -0.4565 -1.2316 13 8 3.4191 0.3051 -1.8316 14 7 5.4063 -0.6673 -1.6653 15 6 5.8940 0.0231 -2.8618 16 1 5.0805 0.1889 -3.5682 17 6 6.5767 1.3648 -2.4862 18 6 7.5559 1.5579 -3.6709 19 7 8.0363 0.2008 -3.9885 20 6 9.2170 -0.1023 -4.6122 21 1 9.6261 -1.0992 -4.5391 22 6 9.8884 0.8719 -5.3384 23 7 11.1800 0.7529 -5.5619 24 14 8.9587 2.3515 -5.9983 25 1 8.8676 3.3906 -4.9413 26 1 9.6778 2.9037 -7.1745 27 1 7.5917 1.9367 -6.4038 28 6 7.0381 -0.7734 -3.5238 29 1 7.4893 -1.4481 -2.7961 30 6 6.4971 -1.5713 -4.7118 31 1 -0.3633 -0.5138 0.8900 32 1 -0.3634 1.0277 0.0005 33 1 -0.3634 -0.5137 -0.8899 34 1 1.6959 -2.0072 -0.0005 35 1 5.2427 -0.3679 1.2040 36 1 3.7217 0.5525 1.2944 37 1 2.6658 -1.3147 2.5382 38 1 4.1867 -2.2351 2.4480 39 1 5.3372 -0.3576 3.6585 40 1 3.9209 1.3506 4.7648 41 1 3.7673 1.4431 2.9942 42 1 2.4821 0.6790 3.9600 43 1 4.4694 -2.3295 4.8862 44 1 4.3303 -0.8524 5.8700 45 1 2.8922 -1.5242 5.0648 46 1 5.9889 -1.2766 -1.1856 47 1 5.8491 2.1753 -2.4447 48 1 7.1160 1.2781 -1.5429 49 1 7.0354 1.9861 -4.5274 50 1 8.3879 2.1971 -3.3751 51 1 11.6492 1.4337 -6.0690 52 1 6.0655 -0.8872 -5.4426 53 1 7.3102 -2.1311 -5.1740 54 1 5.7301 -2.2639 -4.3654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566118052.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:51 Heat of formation + Delta-G solvation = -89.532701 kcal Electronic energy + Delta-G solvation = -31406.205411 eV Core-core repulsion = 27377.079385 eV Total energy + Delta-G solvation = -4029.126026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63182 -40.30201 -39.02185 -37.85202 -35.64686 -35.55393 -34.06252 -32.64862 -32.28123 -31.07963 -30.13824 -28.01487 -27.79103 -26.07270 -25.84802 -23.53395 -22.90434 -22.00870 -21.49448 -20.74123 -20.48471 -18.86698 -18.52365 -17.93137 -17.46321 -17.04383 -16.66586 -16.25711 -16.07162 -15.82150 -15.55861 -15.26257 -15.12624 -14.76558 -14.70744 -14.53403 -14.31458 -14.19284 -14.00342 -13.89369 -13.50414 -13.29097 -13.23559 -13.07907 -12.95656 -12.83013 -12.71866 -12.62987 -12.55681 -12.48029 -12.15775 -12.10370 -12.04797 -11.64747 -11.62099 -11.50284 -11.48298 -11.39243 -11.06374 -10.83074 -10.47890 -9.99538 -9.83932 -9.10038 -8.18814 -5.44418 1.27636 1.36112 1.43315 1.65665 1.81134 2.16564 2.39301 2.51003 3.02179 3.27183 3.63808 3.71068 3.75959 3.88592 3.93049 4.07830 4.10376 4.10634 4.22546 4.26194 4.34777 4.41409 4.50541 4.52953 4.57972 4.68255 4.71424 4.72947 4.77088 4.82060 4.87144 4.88620 4.94171 4.96122 5.03991 5.08070 5.10433 5.12206 5.13309 5.19699 5.28919 5.36862 5.41476 5.49975 5.57039 5.57942 5.61718 5.69093 6.10621 6.63009 6.73506 6.73647 7.34054 7.52660 7.56092 8.08970 9.00829 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002796 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.309427 B =10011.508178 C =10738.012650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.504 3.496 3 O -0.568 6.568 4 N -0.709 5.709 5 C 0.141 3.859 6 H 0.152 0.848 7 C -0.132 4.132 8 C -0.098 4.098 9 C -0.099 4.099 10 C -0.147 4.147 11 C -0.142 4.142 12 C 0.496 3.504 13 O -0.559 6.559 14 N -0.705 5.705 15 C 0.154 3.846 16 H 0.079 0.921 17 C -0.128 4.128 18 C 0.107 3.893 19 N -0.617 5.617 20 C -0.218 4.218 21 H 0.071 0.929 22 C -0.031 4.031 23 N -0.953 5.953 24 Si 0.932 3.068 25 H -0.276 1.276 26 H -0.308 1.308 27 H -0.276 1.276 28 C 0.153 3.847 29 H 0.065 0.935 30 C -0.147 4.147 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.422 0.578 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.415 0.585 47 H 0.069 0.931 48 H 0.084 0.916 49 H 0.016 0.984 50 H 0.045 0.955 51 H 0.261 0.739 52 H 0.033 0.967 53 H 0.046 0.954 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.874 -10.587 21.286 32.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.446 6.446 4 N -0.363 5.363 5 C 0.032 3.968 6 H 0.169 0.831 7 C -0.171 4.171 8 C -0.135 4.135 9 C -0.117 4.117 10 C -0.204 4.204 11 C -0.200 4.200 12 C 0.281 3.719 13 O -0.436 6.436 14 N -0.359 5.359 15 C 0.047 3.953 16 H 0.097 0.903 17 C -0.167 4.167 18 C -0.018 4.018 19 N -0.343 5.343 20 C -0.346 4.346 21 H 0.089 0.911 22 C -0.226 4.226 23 N -0.600 5.600 24 Si 0.762 3.238 25 H -0.202 1.202 26 H -0.237 1.237 27 H -0.202 1.202 28 C 0.047 3.953 29 H 0.082 0.918 30 C -0.206 4.206 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.260 0.740 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.252 0.748 47 H 0.087 0.913 48 H 0.102 0.898 49 H 0.034 0.966 50 H 0.063 0.937 51 H 0.071 0.929 52 H 0.053 0.947 53 H 0.065 0.935 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.806 -9.263 20.757 32.199 hybrid contribution 0.345 0.788 -1.002 1.320 sum -22.461 -8.475 19.755 31.090 Atomic orbital electron populations 1.21889 0.89317 1.05274 1.06017 1.21349 0.91775 0.83382 0.74277 1.90716 1.71565 1.33288 1.49038 1.45568 1.05088 1.09450 1.76229 1.20957 0.82388 1.02267 0.91179 0.83088 1.21968 1.01340 1.00717 0.93036 1.21537 1.01414 0.98974 0.91612 1.21122 0.99963 0.95002 0.95614 1.21858 1.00452 0.97338 1.00781 1.21795 1.01832 0.99731 0.96619 1.21691 0.81387 0.82149 0.86636 1.90739 1.57119 1.37173 1.58540 1.45803 1.14189 1.47411 1.28464 1.21622 0.95070 0.91293 0.87287 0.90276 1.23002 0.97523 0.98027 0.98144 1.21948 0.96077 0.88397 0.95392 1.44906 1.19239 1.01465 1.68666 1.18535 0.94227 0.98117 1.23737 0.91082 1.25478 0.96074 1.00559 1.00493 1.69931 1.07945 1.37336 1.44800 0.86167 0.78387 0.81340 0.77881 1.20215 1.23673 1.20184 1.21282 0.87790 0.90915 0.95334 0.91775 1.22102 1.00467 0.99639 0.98432 0.86591 0.90529 0.88125 0.73973 0.90620 0.91932 0.91569 0.89596 0.91623 0.92782 0.94446 0.92909 0.91740 0.92955 0.92454 0.74775 0.91254 0.89753 0.96626 0.93703 0.92943 0.94729 0.93520 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.32 71.24 0.74 -1.26 16 2 C 0.50 10.55 6.70 87.66 0.59 11.14 16 3 O -0.57 -18.64 12.94 19.42 0.25 -18.39 16 4 N -0.71 -9.74 4.65 -446.12 -2.07 -11.82 16 5 C 0.14 2.18 3.01 44.24 0.13 2.31 16 6 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 7 C -0.13 -2.19 4.30 30.59 0.13 -2.05 16 8 C -0.10 -1.06 4.57 30.59 0.14 -0.92 16 9 C -0.10 -1.25 2.92 -10.79 -0.03 -1.28 16 10 C -0.15 -2.38 8.95 71.98 0.64 -1.73 16 11 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 12 C 0.50 12.78 6.82 87.65 0.60 13.37 16 13 O -0.56 -20.30 13.33 19.42 0.26 -20.04 16 14 N -0.71 -17.03 5.18 -436.90 -2.26 -19.30 16 15 C 0.15 5.03 2.84 46.18 0.13 5.17 16 16 H 0.08 2.91 7.26 -2.38 -0.02 2.89 16 17 C -0.13 -4.60 6.78 31.99 0.22 -4.38 16 18 C 0.11 4.78 4.69 86.86 0.41 5.19 16 19 N -0.62 -29.09 2.94 -668.26 -1.96 -31.05 16 20 C -0.22 -12.23 10.19 84.04 0.86 -11.38 16 21 H 0.07 4.24 8.06 -2.91 -0.02 4.21 16 22 C -0.03 -1.86 5.43 84.86 0.46 -1.40 16 23 N -0.95 -60.16 13.97 21.65 0.30 -59.86 16 24 Si 0.93 48.50 24.27 68.60 1.67 50.17 16 25 H -0.28 -13.77 6.49 99.48 0.65 -13.13 16 26 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 27 H -0.28 -14.17 6.66 99.48 0.66 -13.51 16 28 C 0.15 5.56 3.48 45.34 0.16 5.71 16 29 H 0.06 2.14 7.72 -2.39 -0.02 2.12 16 30 C -0.15 -5.10 9.13 71.98 0.66 -4.44 16 31 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.42 2.25 8.83 -92.71 -0.82 1.43 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.56 4.47 -2.38 -0.01 1.55 16 37 H 0.07 0.69 7.75 -2.39 -0.02 0.67 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.04 0.77 6.56 -2.39 -0.02 0.76 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.41 7.24 8.37 -92.71 -0.78 6.46 16 47 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 48 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 49 H 0.02 0.75 5.58 -2.39 -0.01 0.74 16 50 H 0.04 2.14 6.64 -2.39 -0.02 2.12 16 51 H 0.26 15.81 8.31 -92.71 -0.77 15.03 16 52 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 53 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 54 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -83.29 414.67 1.85 -81.44 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.81 Total: 15.54 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.49 Total: 13.32 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -6.00 Total: -122.04 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: 0.51 Total: -38.43 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.67 Total: 50.17 kcal Total: -83.29 1.85 -81.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566118052.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.090 kcal (2) G-P(sol) polarization free energy of solvation -83.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds