Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.48533 * 2 1 4 4 C 1.53098 * 109.47988 * 239.96703 * 2 1 3 5 5 C 1.53174 * 109.16541 * 182.40585 * 4 2 1 6 6 H 1.09001 * 109.61618 * 176.88940 * 5 4 2 7 7 C 1.50696 * 109.54792 * 297.11806 * 5 4 2 8 8 O 1.21284 * 119.99937 * 359.55554 * 7 5 4 9 9 N 1.34773 * 120.00309 * 179.55212 * 7 5 4 10 10 C 1.46494 * 120.00286 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47275 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47130 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47155 * 180.02562 * 12 11 10 14 14 C 1.46895 * 110.99892 * 294.30425 * 13 12 11 15 15 C 1.53244 * 109.33628 * 172.74780 * 14 13 12 16 16 N 1.47076 * 108.52425 * 53.83125 * 15 14 13 17 17 C 1.36930 * 120.88288 * 128.79544 * 16 15 14 18 18 H 1.08000 * 120.00135 * 206.60338 * 17 16 15 19 19 C 1.38811 * 120.00224 * 26.59950 * 17 16 15 20 20 N 1.31621 * 120.00065 * 16.99624 * 19 17 16 21 21 Si 1.86801 * 119.99983 * 197.00245 * 19 17 16 22 22 H 1.48507 * 109.47254 * 89.99949 * 21 19 17 23 23 H 1.48501 * 109.47094 * 209.99353 * 21 19 17 24 24 H 1.48496 * 109.47369 * 329.99776 * 21 19 17 25 25 C 1.47083 * 118.23504 * 308.81144 * 16 15 14 26 26 C 1.46907 * 110.99883 * 170.00032 * 13 12 11 27 27 C 1.53180 * 109.03145 * 56.98329 * 5 4 2 28 28 C 1.53089 * 109.16687 * 303.01754 * 27 5 4 29 29 O 1.42902 * 109.41329 * 57.61166 * 28 27 5 30 30 H 1.09000 * 109.46884 * 299.97177 * 1 2 3 31 31 H 1.09001 * 109.47120 * 59.97278 * 1 2 3 32 32 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.51779 * 62.50317 * 4 2 1 34 34 H 1.09002 * 109.52384 * 302.31829 * 4 2 1 35 35 H 0.97007 * 119.99611 * 359.97438 * 9 7 5 36 36 H 1.09000 * 109.47192 * 59.99843 * 10 9 7 37 37 H 1.09004 * 109.47301 * 300.00532 * 10 9 7 38 38 H 1.09001 * 109.46697 * 60.00081 * 11 10 9 39 39 H 1.08993 * 109.47241 * 299.99976 * 11 10 9 40 40 H 1.09004 * 109.47544 * 300.00576 * 12 11 10 41 41 H 1.09000 * 109.47094 * 59.99977 * 12 11 10 42 42 H 1.09006 * 109.49531 * 292.70174 * 14 13 12 43 43 H 1.08998 * 109.49502 * 52.78612 * 14 13 12 44 44 H 1.09002 * 109.62824 * 294.11571 * 15 14 13 45 45 H 1.09006 * 109.62888 * 173.54242 * 15 14 13 46 46 H 0.96999 * 120.00259 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.63071 * 291.47763 * 25 16 15 48 48 H 1.08995 * 109.62666 * 170.89398 * 25 16 15 49 49 H 1.08997 * 109.49444 * 307.21610 * 26 13 12 50 50 H 1.09002 * 109.48768 * 67.27177 * 26 13 12 51 51 H 1.09002 * 109.52435 * 62.92715 * 27 5 4 52 52 H 1.09005 * 109.52285 * 183.11219 * 27 5 4 53 53 H 1.09001 * 109.48248 * 177.59132 * 28 27 5 54 54 H 1.08999 * 109.47946 * 297.62803 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7224 -1.2496 5 6 3.5710 -0.7710 -1.2123 6 1 3.9404 -1.3320 -2.0707 7 6 4.1211 0.6314 -1.2519 8 8 3.3652 1.5779 -1.3130 9 7 5.4532 0.8340 -1.2195 10 6 5.9879 2.1973 -1.2586 11 6 7.5164 2.1472 -1.2105 12 6 8.0749 3.5710 -1.2520 13 7 9.5424 3.5228 -1.2064 14 6 10.0120 2.9928 0.0806 15 6 11.5297 2.7889 0.0219 16 7 12.1552 4.0528 -0.3956 17 6 13.1865 4.5973 0.3220 18 1 13.3561 5.6637 0.2995 19 6 14.0140 3.7788 1.0783 20 7 14.0358 2.4813 0.8582 21 14 15.0966 4.5187 2.4088 22 1 14.3555 4.5388 3.6956 23 1 16.3263 3.6997 2.5586 24 1 15.4685 5.9055 2.0300 25 6 11.6434 4.7165 -1.6043 26 6 10.1213 4.8447 -1.4816 27 6 4.0175 -1.4602 0.0808 28 6 3.4307 -0.7094 1.2790 29 8 2.0066 -0.6743 1.1664 30 1 -0.3633 0.5134 0.8902 31 1 -0.3633 0.5143 -0.8897 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7148 -0.1844 -2.1399 34 1 1.6442 -1.7376 -1.2709 35 1 6.0578 0.0770 -1.1702 36 1 5.6153 2.7585 -0.4017 37 1 5.6695 2.6862 -2.1793 38 1 7.8886 1.5861 -2.0677 39 1 7.8351 1.6582 -0.2900 40 1 7.7561 4.0597 -2.1727 41 1 7.7026 4.1324 -0.3951 42 1 9.7704 3.6992 0.8748 43 1 9.5242 2.0389 0.2809 44 1 11.7664 2.0071 -0.6998 45 1 11.8994 2.5054 1.0074 46 1 14.6143 1.9093 1.3864 47 1 11.8910 4.1201 -2.4823 48 1 12.0882 5.7076 -1.6939 49 1 9.7127 5.2337 -2.4143 50 1 9.8777 5.5253 -0.6658 51 1 3.6612 -2.4903 0.0864 52 1 5.1058 -1.4499 0.1420 53 1 3.7100 -1.2204 2.2004 54 1 3.8193 0.3089 1.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660904415.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -88.282897 kcal Electronic energy + Delta-G solvation = -30170.786460 eV Core-core repulsion = 26141.714630 eV Total energy + Delta-G solvation = -4029.071830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.70682 -39.85669 -39.31807 -37.05880 -35.86337 -34.80907 -33.82578 -33.44757 -31.83178 -31.63692 -28.90262 -28.52961 -26.48340 -25.25469 -24.45624 -24.10419 -23.50186 -22.40927 -22.20747 -20.82914 -20.44768 -18.74106 -17.73184 -17.44162 -17.28184 -17.08696 -16.91341 -16.64034 -16.13497 -16.03477 -15.62865 -15.37707 -15.28131 -15.21005 -15.04357 -14.85574 -14.65419 -14.45875 -13.69222 -13.48915 -13.41084 -13.32242 -13.20617 -12.95214 -12.94150 -12.86147 -12.75990 -12.63949 -12.53943 -12.30787 -12.08275 -12.05023 -11.95731 -11.78383 -11.71049 -11.50306 -11.47294 -11.31422 -10.81536 -10.59337 -10.26511 -10.08696 -9.27248 -8.68488 -7.88429 -5.32792 1.45941 1.47090 1.56046 1.58512 2.14053 2.49908 2.84131 3.00503 3.26690 3.55296 3.68316 3.69135 3.78907 3.94049 3.95958 4.02467 4.11319 4.18656 4.26514 4.34386 4.37777 4.41415 4.47251 4.52450 4.61360 4.63599 4.66136 4.66996 4.69168 4.71848 4.79649 4.80271 4.84801 4.88978 4.95764 5.03094 5.04110 5.08090 5.14472 5.19897 5.21682 5.25617 5.30144 5.38142 5.45567 5.60580 5.68855 6.18194 6.28071 6.29493 6.37257 6.52128 7.13088 7.21867 7.83736 8.37541 9.18256 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020949 B = 0.001851 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.251415 B =15120.657880 C =15820.211150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.054 0.946 4 C -0.125 4.125 5 C -0.110 4.110 6 H 0.130 0.870 7 C 0.511 3.489 8 O -0.578 6.578 9 N -0.718 5.718 10 C 0.129 3.871 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.540 5.540 14 C 0.050 3.950 15 C 0.184 3.816 16 N -0.615 5.615 17 C -0.264 4.264 18 H 0.066 0.934 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.143 3.857 26 C 0.054 3.946 27 C -0.141 4.141 28 C 0.052 3.948 29 O -0.398 6.398 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.028 0.972 42 H 0.013 0.987 43 H 0.087 0.913 44 H 0.001 0.999 45 H 0.055 0.945 46 H 0.251 0.749 47 H 0.018 0.982 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.021 0.979 51 H 0.100 0.900 52 H 0.098 0.902 53 H 0.110 0.890 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.700 -9.101 -4.842 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.072 0.928 4 C -0.163 4.163 5 C -0.131 4.131 6 H 0.148 0.852 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.370 5.370 10 C 0.005 3.995 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.079 4.079 15 C 0.058 3.942 16 N -0.340 5.340 17 C -0.394 4.394 18 H 0.084 0.916 19 C -0.247 4.247 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.018 3.982 26 C -0.075 4.075 27 C -0.178 4.178 28 C -0.025 4.025 29 O -0.318 6.318 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.046 0.954 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.019 0.981 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.039 0.961 51 H 0.119 0.881 52 H 0.116 0.884 53 H 0.128 0.872 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -25.070 -8.902 -5.057 27.080 hybrid contribution 1.237 0.815 1.227 1.923 sum -23.833 -8.087 -3.830 25.457 Atomic orbital electron populations 1.21741 0.92285 1.03119 1.02605 1.22378 0.95891 0.95600 0.84904 0.92801 1.21989 0.93331 1.02384 0.98622 1.21515 0.97235 0.92278 1.02085 0.85195 1.21136 0.82164 0.92104 0.74736 1.90655 1.58504 1.45525 1.51086 1.45979 1.06964 1.09626 1.74431 1.21147 0.93232 0.83517 1.01617 1.21637 0.92566 0.97258 1.03732 1.22021 0.86594 0.96936 1.01340 1.61906 1.07529 1.24943 1.32064 1.22628 0.97165 0.99072 0.89065 1.20644 0.88601 0.86663 0.98252 1.44414 1.37671 1.25036 1.26835 1.19528 1.05811 0.91515 1.22581 0.91643 1.25780 0.99330 0.96162 1.03402 1.70180 1.41845 1.04435 1.41562 0.85260 0.77779 0.77883 0.79478 1.21234 1.22022 1.19458 1.21135 0.92480 0.96119 0.88507 1.22466 0.95731 0.89001 1.00286 1.22209 1.02568 1.00952 0.92106 1.22701 0.80790 0.99053 0.99955 1.87882 1.21657 1.78131 1.44134 0.92598 0.90239 0.91162 0.90640 0.88788 0.74834 0.92800 0.91746 0.89883 0.91103 0.89533 0.95380 0.96828 0.89469 0.98130 0.92621 0.94026 0.96427 0.92301 0.88701 0.96112 0.88108 0.88381 0.87218 0.95264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.56 71.98 0.69 -1.48 16 2 C 0.07 1.33 2.98 30.63 0.09 1.42 16 3 H 0.05 1.35 5.82 -2.39 -0.01 1.34 16 4 C -0.13 -1.81 4.56 30.69 0.14 -1.67 16 5 C -0.11 -1.36 3.04 -11.42 -0.03 -1.39 16 6 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 7 C 0.51 9.50 5.82 87.66 0.51 10.01 16 8 O -0.58 -15.49 13.85 -3.04 -0.04 -15.53 16 9 N -0.72 -10.98 5.43 -463.07 -2.52 -13.50 16 10 C 0.13 2.36 5.67 86.38 0.49 2.85 16 11 C -0.11 -2.16 5.26 30.59 0.16 -2.00 16 12 C 0.06 1.41 4.96 86.30 0.43 1.84 16 13 N -0.54 -17.40 4.63 -895.23 -4.14 -21.54 16 14 C 0.05 1.85 5.46 86.39 0.47 2.32 16 15 C 0.18 8.93 5.42 86.35 0.47 9.40 16 16 N -0.62 -31.41 3.04 -698.12 -2.12 -33.53 16 17 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 18 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.88 4.94 84.86 0.42 -2.46 16 20 N -0.93 -55.15 11.15 21.65 0.24 -54.91 16 21 Si 0.97 44.90 29.59 68.60 2.03 46.93 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C 0.14 6.00 6.69 86.35 0.58 6.58 16 26 C 0.05 1.82 5.62 86.38 0.49 2.31 16 27 C -0.14 -1.42 5.56 30.68 0.17 -1.25 16 28 C 0.05 0.82 6.62 72.01 0.48 1.30 16 29 O -0.40 -8.13 10.41 -148.98 -1.55 -9.68 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 1.16 8.02 -2.39 -0.02 1.14 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.41 4.14 7.86 -92.70 -0.73 3.41 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.38 6.40 -2.39 -0.02 1.37 16 40 H 0.09 1.82 7.97 -2.39 -0.02 1.80 16 41 H 0.03 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.09 2.76 6.16 -2.39 -0.01 2.74 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 3.03 6.12 -2.38 -0.01 3.02 16 46 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 49 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 50 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.10 0.64 7.49 -2.38 -0.02 0.63 16 53 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 54 H 0.03 0.57 7.38 -2.39 -0.02 0.55 16 Total: -1.00 -71.43 408.68 -1.61 -73.04 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.14 Total: 14.83 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 6.35 Total: 13.89 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -8.54 Total: -123.48 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -1.59 Total: -25.21 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.43 -1.61 -73.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660904415.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.239 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds