Wall clock time and date at job start Tue Mar 31 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47928 * 2 1 4 4 C 1.53285 * 109.45650 * 119.99035 * 2 1 3 5 5 C 1.53180 * 109.06029 * 177.55577 * 4 2 1 6 6 H 1.08997 * 109.53992 * 183.15134 * 5 4 2 7 7 C 1.50702 * 109.54599 * 62.97084 * 5 4 2 8 8 O 1.21279 * 119.99854 * 0.17445 * 7 5 4 9 9 N 1.34775 * 119.99971 * 180.17689 * 7 5 4 10 10 C 1.46497 * 120.00124 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47364 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47268 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47412 * 179.97438 * 12 11 10 14 14 C 1.46892 * 111.00049 * 294.30300 * 13 12 11 15 15 C 1.53244 * 109.33993 * 172.74453 * 14 13 12 16 16 N 1.47072 * 108.52054 * 53.82717 * 15 14 13 17 17 C 1.36937 * 120.88093 * 128.83929 * 16 15 14 18 18 H 1.08000 * 120.00365 * 206.56660 * 17 16 15 19 19 C 1.38818 * 119.99991 * 26.56051 * 17 16 15 20 20 N 1.31615 * 119.99663 * 17.02381 * 19 17 16 21 21 Si 1.86800 * 120.00004 * 197.01883 * 19 17 16 22 22 H 1.48491 * 109.47186 * 90.00302 * 21 19 17 23 23 H 1.48500 * 109.46869 * 210.00241 * 21 19 17 24 24 H 1.48502 * 109.47406 * 330.00115 * 21 19 17 25 25 C 1.47075 * 118.24209 * 308.81737 * 16 15 14 26 26 C 1.46904 * 110.99906 * 169.99687 * 13 12 11 27 27 C 1.53178 * 109.11027 * 303.05807 * 5 4 2 28 28 C 1.53089 * 109.16310 * 57.02509 * 27 5 4 29 29 O 1.42899 * 109.41772 * 302.39390 * 28 27 5 30 30 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47309 * 300.02174 * 1 2 3 32 32 H 1.09005 * 109.46795 * 60.02572 * 1 2 3 33 33 H 1.08993 * 109.50108 * 57.72484 * 4 2 1 34 34 H 1.08993 * 109.63920 * 297.47036 * 4 2 1 35 35 H 0.97001 * 120.00187 * 359.97438 * 9 7 5 36 36 H 1.09007 * 109.46562 * 59.99987 * 10 9 7 37 37 H 1.08999 * 109.47462 * 300.00292 * 10 9 7 38 38 H 1.08997 * 109.46824 * 59.99816 * 11 10 9 39 39 H 1.09000 * 109.46793 * 300.00155 * 11 10 9 40 40 H 1.08999 * 109.47306 * 300.00222 * 12 11 10 41 41 H 1.09006 * 109.47541 * 59.99818 * 12 11 10 42 42 H 1.09000 * 109.49441 * 292.70028 * 14 13 12 43 43 H 1.08997 * 109.49760 * 52.78235 * 14 13 12 44 44 H 1.09000 * 109.62738 * 294.11587 * 15 14 13 45 45 H 1.09004 * 109.62852 * 173.54228 * 15 14 13 46 46 H 0.97008 * 119.99826 * 179.97438 * 20 19 17 47 47 H 1.09004 * 109.62834 * 291.47850 * 25 16 15 48 48 H 1.09003 * 109.63437 * 170.89515 * 25 16 15 49 49 H 1.08997 * 109.49316 * 307.21573 * 26 13 12 50 50 H 1.08998 * 109.48858 * 67.29920 * 26 13 12 51 51 H 1.08997 * 109.52700 * 176.93353 * 27 5 4 52 52 H 1.09003 * 109.52385 * 297.11929 * 27 5 4 53 53 H 1.09006 * 109.47991 * 62.37983 * 28 27 5 54 54 H 1.08997 * 109.48240 * 182.39405 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0406 -0.7224 1.2518 5 6 3.5711 -0.7708 1.2121 6 1 3.9405 -1.3319 2.0705 7 6 4.1211 0.6317 1.2519 8 8 3.3650 1.5781 1.3098 9 7 5.4532 0.8342 1.2231 10 6 5.9879 2.1975 1.2611 11 6 7.5165 2.1474 1.2178 12 6 8.0749 3.5712 1.2582 13 7 9.5425 3.5230 1.2172 14 6 10.0826 2.8936 2.4295 15 6 11.5942 2.6984 2.2697 16 7 12.1979 3.9929 1.9192 17 6 13.2697 4.4808 2.6180 18 1 13.4406 5.5459 2.6705 19 6 14.1365 3.6063 3.2592 20 7 14.1425 2.3306 2.9357 21 14 15.2943 4.2403 4.5808 22 1 14.6273 4.1569 5.9048 23 1 16.5285 3.4145 4.5954 24 1 15.6479 5.6536 4.2929 25 6 11.6203 4.7494 0.7979 26 6 10.1078 4.8639 1.0157 27 6 4.0177 -1.4599 -0.0809 28 6 3.4308 -0.7091 -1.2790 29 8 2.0067 -0.6741 -1.1664 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5141 0.8898 32 1 -0.3633 0.5135 -0.8903 33 1 1.6445 -1.7376 1.2730 34 1 1.7161 -0.1851 2.1428 35 1 6.0580 0.0772 1.1771 36 1 5.6667 2.6882 2.1800 37 1 5.6179 2.7571 0.4021 38 1 7.8379 1.6565 0.2992 39 1 7.8861 1.5880 2.0772 40 1 7.7052 4.1310 0.3991 41 1 7.7534 4.0617 2.1770 42 1 9.8876 3.5341 3.2897 43 1 9.6049 1.9257 2.5806 44 1 11.7882 1.9770 1.4760 45 1 12.0181 2.3384 3.2072 46 1 14.7485 1.7195 3.3834 47 1 11.8169 4.2251 -0.1374 48 1 12.0616 5.7455 0.7622 49 1 9.6482 5.3247 0.1413 50 1 9.9124 5.4769 1.8955 51 1 5.1059 -1.4496 -0.1422 52 1 3.6615 -2.4901 -0.0866 53 1 3.8193 0.3092 -1.2957 54 1 3.7103 -1.2198 -2.2005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660904421.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:07 Heat of formation + Delta-G solvation = -88.225911 kcal Electronic energy + Delta-G solvation = -30107.540594 eV Core-core repulsion = 26078.471235 eV Total energy + Delta-G solvation = -4029.069359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.70083 -39.85590 -39.30977 -37.05878 -35.86327 -34.80462 -33.81611 -33.44269 -31.83192 -31.63667 -28.89719 -28.52852 -26.48068 -25.24898 -24.45410 -24.10113 -23.49518 -22.40571 -22.20736 -20.82841 -20.44724 -18.74117 -17.73109 -17.41333 -17.27846 -17.15464 -16.79982 -16.69999 -16.12130 -16.03608 -15.61001 -15.38506 -15.30440 -15.21517 -15.03408 -14.81283 -14.65510 -14.47866 -13.69014 -13.47264 -13.41525 -13.32266 -13.20787 -12.96174 -12.93278 -12.84805 -12.75914 -12.63925 -12.53767 -12.30881 -12.08343 -12.03757 -11.96023 -11.78315 -11.70432 -11.50147 -11.49170 -11.28936 -10.81405 -10.59300 -10.25691 -10.08676 -9.27097 -8.68484 -7.88421 -5.32757 1.46049 1.47126 1.56138 1.58463 2.13910 2.49985 2.85263 3.00502 3.26760 3.55562 3.68307 3.69659 3.79044 3.94128 3.96300 4.02309 4.11713 4.18892 4.27838 4.34371 4.37872 4.42121 4.47198 4.53314 4.61406 4.63581 4.66139 4.67872 4.69209 4.72529 4.79546 4.80830 4.85003 4.88984 4.96023 5.03156 5.04669 5.08731 5.14517 5.19860 5.21962 5.25937 5.30383 5.38169 5.45569 5.60621 5.68894 6.18295 6.28131 6.30613 6.37247 6.52061 7.13121 7.21765 7.83784 8.37567 9.18258 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026991 B = 0.001746 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.140771 B =16030.192841 C =16304.313108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.055 0.945 4 C -0.126 4.126 5 C -0.111 4.111 6 H 0.128 0.872 7 C 0.511 3.489 8 O -0.578 6.578 9 N -0.718 5.718 10 C 0.129 3.871 11 C -0.114 4.114 12 C 0.059 3.941 13 N -0.540 5.540 14 C 0.050 3.950 15 C 0.184 3.816 16 N -0.615 5.615 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.143 3.857 26 C 0.054 3.946 27 C -0.140 4.140 28 C 0.052 3.948 29 O -0.398 6.398 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.029 0.971 42 H 0.014 0.986 43 H 0.087 0.913 44 H 0.001 0.999 45 H 0.056 0.944 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.021 0.979 51 H 0.098 0.902 52 H 0.100 0.900 53 H 0.031 0.969 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.957 -8.677 -5.158 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.013 3.987 3 H 0.073 0.927 4 C -0.164 4.164 5 C -0.132 4.132 6 H 0.145 0.855 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.370 5.370 10 C 0.005 3.995 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.079 4.079 15 C 0.058 3.942 16 N -0.339 5.339 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.195 1.195 25 C 0.018 3.982 26 C -0.075 4.075 27 C -0.178 4.178 28 C -0.024 4.024 29 O -0.317 6.317 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.047 0.953 42 H 0.032 0.968 43 H 0.105 0.895 44 H 0.019 0.981 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.035 0.965 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.039 0.961 51 H 0.117 0.883 52 H 0.118 0.882 53 H 0.049 0.951 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.346 -8.451 -5.598 27.298 hybrid contribution 1.310 0.692 1.556 2.149 sum -24.036 -7.759 -4.042 25.578 Atomic orbital electron populations 1.21742 0.92326 1.03093 1.02599 1.22400 0.95848 0.95614 0.84849 0.92700 1.22022 0.93337 1.02361 0.98649 1.21516 0.97249 0.92296 1.02139 0.85453 1.21129 0.82168 0.92090 0.74735 1.90653 1.58493 1.45523 1.51087 1.45979 1.06945 1.09624 1.74452 1.21148 0.93249 0.83538 1.01576 1.21637 0.92547 0.97187 1.03824 1.22019 0.86711 0.97173 1.00981 1.61898 1.06130 1.20817 1.37615 1.22625 0.96800 0.98681 0.89812 1.20645 0.88900 0.86373 0.98259 1.44413 1.34068 1.21031 1.34432 1.19535 1.02546 0.91628 1.25784 0.91637 1.25776 0.99379 0.96271 1.03194 1.70182 1.40522 1.04027 1.43289 0.85258 0.77924 0.77811 0.79402 1.21238 1.22019 1.19454 1.21136 0.92069 0.95317 0.89719 1.22464 0.95888 0.88981 1.00145 1.22207 1.02611 1.00916 0.92077 1.22706 0.80728 0.99130 0.99883 1.87879 1.21723 1.78144 1.43996 0.91206 0.90351 0.92492 0.88850 0.90788 0.74837 0.92559 0.91977 0.89911 0.91076 0.89592 0.95319 0.96804 0.89470 0.98138 0.92610 0.94028 0.96456 0.92304 0.88729 0.96087 0.88313 0.88191 0.95089 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.56 71.98 0.69 -1.45 16 2 C 0.07 1.32 2.98 30.69 0.09 1.41 16 3 H 0.06 1.35 5.81 -2.38 -0.01 1.34 16 4 C -0.13 -1.83 4.58 30.75 0.14 -1.69 16 5 C -0.11 -1.38 3.04 -11.42 -0.03 -1.41 16 6 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 7 C 0.51 9.52 5.82 87.66 0.51 10.03 16 8 O -0.58 -15.49 13.85 -3.03 -0.04 -15.53 16 9 N -0.72 -10.98 5.43 -463.06 -2.52 -13.50 16 10 C 0.13 2.35 5.67 86.38 0.49 2.84 16 11 C -0.11 -2.16 5.26 30.59 0.16 -2.00 16 12 C 0.06 1.41 4.96 86.30 0.43 1.84 16 13 N -0.54 -17.40 4.63 -895.26 -4.14 -21.54 16 14 C 0.05 1.85 5.46 86.39 0.47 2.32 16 15 C 0.18 8.92 5.42 86.35 0.47 9.39 16 16 N -0.62 -31.39 3.04 -698.12 -2.12 -33.51 16 17 C -0.26 -14.71 9.63 84.03 0.81 -13.91 16 18 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.84 4.94 84.86 0.42 -2.43 16 20 N -0.93 -55.12 11.15 21.65 0.24 -54.87 16 21 Si 0.97 44.84 29.59 68.60 2.03 46.87 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 C 0.14 6.00 6.69 86.35 0.58 6.58 16 26 C 0.05 1.83 5.62 86.38 0.49 2.31 16 27 C -0.14 -1.36 5.57 30.68 0.17 -1.19 16 28 C 0.05 0.78 6.62 72.01 0.48 1.25 16 29 O -0.40 -7.84 10.41 -148.98 -1.55 -9.39 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.17 8.02 -2.39 -0.02 1.15 16 35 H 0.41 4.15 7.87 -92.71 -0.73 3.42 16 36 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.39 6.40 -2.39 -0.02 1.37 16 40 H 0.09 1.81 7.97 -2.39 -0.02 1.79 16 41 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 42 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 2.75 6.16 -2.39 -0.01 2.74 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 3.03 6.12 -2.38 -0.01 3.02 16 46 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 49 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 50 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.10 0.59 7.51 -2.39 -0.02 0.58 16 52 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.03 0.56 7.38 -2.38 -0.02 0.54 16 54 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -71.25 408.71 -1.61 -72.86 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.14 Total: 14.71 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.35 Total: 13.91 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -8.54 Total: -123.43 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.59 Total: -24.92 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.25 -1.61 -72.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660904421.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.363 kcal (2) G-P(sol) polarization free energy of solvation -71.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds