Wall clock time and date at job start Tue Mar 31 2020 23:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47107 * 2 1 4 4 N 1.46494 * 109.47279 * 120.00278 * 2 1 3 5 5 C 1.34772 * 120.00259 * 154.99933 * 4 2 1 6 6 O 1.21284 * 119.99920 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00030 * 179.97438 * 5 4 2 8 8 C 1.53007 * 109.46994 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 5 10 10 C 1.50703 * 109.47076 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99536 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00081 * 179.97438 * 10 9 8 13 13 C 1.46920 * 120.63274 * 0.02562 * 12 10 9 14 14 C 1.53193 * 108.77550 * 126.36805 * 13 12 10 15 15 C 1.53040 * 109.31153 * 54.63854 * 14 13 12 16 16 H 1.09004 * 109.46170 * 58.65203 * 15 14 13 17 17 N 1.46502 * 109.45822 * 178.61249 * 15 14 13 18 18 C 1.36935 * 120.00003 * 275.06158 * 17 15 14 19 19 H 1.08007 * 119.99949 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99988 * 179.97438 * 18 17 15 21 21 N 1.31614 * 119.99831 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99827 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47575 * 89.99416 * 22 20 18 24 24 H 1.48507 * 109.46942 * 209.99345 * 22 20 18 25 25 H 1.48498 * 109.47378 * 329.99090 * 22 20 18 26 26 C 1.53041 * 109.53567 * 298.63320 * 15 14 13 27 27 H 1.09002 * 109.49802 * 301.41484 * 26 15 14 28 28 C 1.53003 * 109.52102 * 181.33369 * 26 15 14 29 29 C 1.46925 * 120.62902 * 179.97438 * 12 10 9 30 30 H 1.09001 * 109.47126 * 300.00215 * 1 2 3 31 31 H 1.09007 * 109.47003 * 59.99582 * 1 2 3 32 32 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47024 * 240.00329 * 2 1 3 34 34 H 1.09003 * 109.47107 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47280 * 299.99991 * 3 2 1 36 36 H 1.09000 * 109.46910 * 60.00259 * 3 2 1 37 37 H 0.97008 * 120.00102 * 334.99717 * 4 2 1 38 38 H 1.09006 * 109.47053 * 60.00758 * 7 5 4 39 39 H 1.08994 * 109.47497 * 300.00371 * 7 5 4 40 40 H 1.08994 * 109.46887 * 60.00288 * 8 7 5 41 41 H 1.09002 * 109.47045 * 300.00474 * 8 7 5 42 42 H 1.08994 * 109.47425 * 60.00275 * 9 8 7 43 43 H 1.09002 * 109.47408 * 299.99908 * 9 8 7 44 44 H 1.09004 * 109.58885 * 246.15735 * 13 12 10 45 45 H 1.09002 * 109.58368 * 6.57998 * 13 12 10 46 46 H 1.09005 * 109.49580 * 174.58602 * 14 13 12 47 47 H 1.08994 * 109.49562 * 294.64929 * 14 13 12 48 48 H 0.97005 * 119.99748 * 95.07143 * 17 15 14 49 49 H 0.97009 * 119.99833 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.47302 * 300.07693 * 28 26 15 51 51 H 1.08994 * 109.46897 * 60.08431 * 28 26 15 52 52 H 1.09001 * 109.46854 * 180.02562 * 28 26 15 53 53 H 1.09000 * 109.58550 * 113.84297 * 29 12 10 54 54 H 1.09005 * 109.59130 * 353.41936 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1987 0.2025 7 6 3.7428 -1.9691 2.4249 8 6 5.1452 -2.5203 2.1588 9 6 5.6551 -3.2416 3.4080 10 6 7.0366 -3.7839 3.1462 11 8 7.5613 -3.6109 2.0665 12 7 7.6889 -4.4612 4.1118 13 6 7.0661 -4.6792 5.4244 14 6 7.0917 -6.1782 5.7394 15 6 8.5288 -6.6934 5.6322 16 1 9.1644 -6.1437 6.3265 17 7 8.5620 -8.1197 5.9652 18 6 8.6554 -8.5156 7.2727 19 1 8.7042 -7.7763 8.0586 20 6 8.6864 -9.8670 7.5882 21 7 8.7757 -10.2475 8.8450 22 14 8.6012 -11.1455 6.2290 23 1 9.9754 -11.4749 5.7723 24 1 7.9435 -12.3731 6.7447 25 1 7.8170 -10.6053 5.0896 26 6 9.0397 -6.4912 4.2039 27 1 8.3900 -7.0204 3.5067 28 6 10.4646 -7.0366 4.0885 29 6 9.0359 -4.9963 3.8713 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.4622 -0.7387 1.9895 38 1 3.0704 -2.7912 2.6702 39 1 3.7796 -1.2685 3.2590 40 1 5.8179 -1.6986 1.9132 41 1 5.1079 -3.2210 1.3247 42 1 4.9823 -4.0633 3.6532 43 1 5.6923 -2.5412 4.2424 44 1 7.6229 -4.1358 6.1879 45 1 6.0344 -4.3280 5.4022 46 1 6.7203 -6.3438 6.7508 47 1 6.4599 -6.7102 5.0282 48 1 8.5179 -8.7837 5.2593 49 1 8.7977 -11.1919 9.0655 50 1 11.1139 -6.5071 4.7858 51 1 10.4667 -8.1003 4.3262 52 1 10.8278 -6.8917 3.0711 53 1 9.7537 -4.4789 4.5077 54 1 9.3040 -4.8544 2.8243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667211971.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:52 Heat of formation + Delta-G solvation = -109.462970 kcal Electronic energy + Delta-G solvation = -29669.660341 eV Core-core repulsion = 25639.670073 eV Total energy + Delta-G solvation = -4029.990267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33864 -40.78645 -39.12936 -37.06124 -36.24768 -35.29119 -34.40571 -33.20015 -32.54964 -31.47036 -29.67461 -28.10446 -27.50029 -26.58040 -24.37536 -23.63286 -22.97002 -21.96044 -21.38050 -21.24062 -20.08463 -19.38147 -18.20933 -17.88365 -17.17726 -17.00475 -16.80785 -16.63525 -16.23165 -16.02294 -15.34326 -15.24520 -15.10883 -14.85866 -14.81133 -14.58029 -14.38531 -14.06187 -13.77766 -13.69543 -13.46553 -13.38403 -13.09366 -13.04920 -12.95689 -12.86970 -12.75751 -12.69561 -12.39101 -12.35093 -12.29315 -12.10319 -11.95971 -11.91600 -11.87248 -11.74517 -11.69489 -11.15974 -10.98804 -10.87370 -10.67827 -10.08250 -9.63135 -9.25208 -7.99036 -5.30353 1.38506 1.39645 1.46735 1.67320 1.70675 2.01634 2.32187 2.49763 3.32755 3.51328 3.59227 3.74650 3.83143 3.96627 4.00650 4.06531 4.08949 4.12407 4.15749 4.30406 4.32300 4.39378 4.45785 4.61074 4.62623 4.63650 4.70485 4.72581 4.74275 4.76835 4.81400 4.83176 4.86810 4.93017 4.99178 5.02330 5.05374 5.18248 5.19280 5.26195 5.28217 5.31472 5.37562 5.40663 5.52474 5.60904 5.65592 5.81861 6.25276 6.48359 6.63538 7.11381 7.22267 7.35449 7.88759 8.06789 9.22418 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020261 B = 0.001831 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.644752 B =15286.929250 C =15889.856492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 C -0.159 4.159 4 N -0.716 5.716 5 C 0.503 3.497 6 O -0.593 6.593 7 C -0.130 4.130 8 C -0.084 4.084 9 C -0.131 4.131 10 C 0.505 3.495 11 O -0.593 6.593 12 N -0.610 5.610 13 C 0.114 3.886 14 C -0.145 4.145 15 C 0.181 3.819 16 H 0.049 0.951 17 N -0.748 5.748 18 C -0.216 4.216 19 H 0.063 0.937 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.945 3.055 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.257 1.257 26 C -0.103 4.103 27 H 0.059 0.941 28 C -0.136 4.136 29 C 0.124 3.876 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.047 0.953 41 H 0.042 0.958 42 H 0.121 0.879 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.120 0.880 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.361 0.639 49 H 0.255 0.745 50 H 0.058 0.942 51 H 0.044 0.956 52 H 0.065 0.935 53 H 0.079 0.921 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.705 23.465 -12.669 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 C -0.217 4.217 4 N -0.370 5.370 5 C 0.292 3.708 6 O -0.474 6.474 7 C -0.170 4.170 8 C -0.122 4.122 9 C -0.170 4.170 10 C 0.296 3.704 11 O -0.474 6.474 12 N -0.342 5.342 13 C -0.008 4.008 14 C -0.186 4.186 15 C 0.073 3.927 16 H 0.067 0.933 17 N -0.391 5.391 18 C -0.347 4.347 19 H 0.081 0.919 20 C -0.253 4.253 21 N -0.634 5.634 22 Si 0.774 3.226 23 H -0.210 1.210 24 H -0.226 1.226 25 H -0.182 1.182 26 C -0.123 4.123 27 H 0.078 0.922 28 C -0.194 4.194 29 C 0.001 3.999 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.101 0.899 45 H 0.138 0.862 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.194 0.806 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.063 0.937 52 H 0.084 0.916 53 H 0.097 0.903 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.941 23.632 -13.703 32.143 hybrid contribution 0.256 -1.527 -0.264 1.571 sum -16.684 22.104 -13.966 31.017 Atomic orbital electron populations 1.22014 0.91629 1.03107 1.04141 1.20978 0.95776 0.92713 0.88147 1.22142 1.00255 0.96019 1.03328 1.46086 1.17434 1.56037 1.17414 1.21378 0.81298 0.78022 0.90137 1.90724 1.57677 1.61493 1.37488 1.21707 0.97040 1.02460 0.95779 1.20930 0.95440 0.99411 0.96455 1.21768 0.91681 1.02894 1.00680 1.21463 0.88944 0.77223 0.82797 1.90686 1.70197 1.60348 1.26167 1.48300 1.17260 1.54118 1.14520 1.21950 1.00482 0.95428 0.82984 1.22461 0.98663 0.95656 1.01801 1.20432 0.94789 0.83766 0.93736 0.93334 1.42811 1.89643 1.03021 1.03588 1.19016 1.39668 0.91656 0.84407 0.91866 1.25351 1.03356 0.98903 0.97695 1.69861 1.60128 1.15426 1.18017 0.85554 0.77915 0.79214 0.79915 1.20957 1.22625 1.18204 1.21646 0.97872 0.95945 0.96832 0.92221 1.21645 0.95153 1.00894 1.01680 1.21522 0.83950 0.92233 1.02225 0.90322 0.90277 0.91860 0.92433 0.94974 0.90683 0.90918 0.74516 0.85662 0.85272 0.93440 0.93925 0.86065 0.85240 0.89941 0.86228 0.91406 0.92692 0.80599 0.93590 0.92281 0.93655 0.91604 0.90328 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.38 71.98 0.68 -0.12 16 2 C 0.13 1.51 3.18 44.99 0.14 1.65 16 3 C -0.16 -1.84 9.48 71.98 0.68 -1.16 16 4 N -0.72 -7.51 5.08 -442.54 -2.25 -9.76 16 5 C 0.50 8.79 7.79 87.66 0.68 9.47 16 6 O -0.59 -17.33 15.65 -3.04 -0.05 -17.38 16 7 C -0.13 -1.33 5.70 29.85 0.17 -1.16 16 8 C -0.08 -1.59 3.79 30.60 0.12 -1.47 16 9 C -0.13 -1.92 4.05 29.85 0.12 -1.80 16 10 C 0.51 12.73 7.70 87.66 0.67 13.41 16 11 O -0.59 -20.68 15.40 -3.04 -0.05 -20.73 16 12 N -0.61 -14.52 2.97 -819.00 -2.43 -16.95 16 13 C 0.11 2.22 6.34 86.36 0.55 2.77 16 14 C -0.15 -4.11 5.66 30.67 0.17 -3.94 16 15 C 0.18 6.20 2.19 45.02 0.10 6.29 16 16 H 0.05 1.76 8.08 -2.38 -0.02 1.74 16 17 N -0.75 -32.84 4.22 -322.80 -1.36 -34.20 16 18 C -0.22 -11.67 10.41 84.03 0.87 -10.80 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 21 N -0.98 -61.61 13.97 21.65 0.30 -61.31 16 22 Si 0.95 45.12 27.73 68.60 1.90 47.02 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.26 -11.22 6.52 99.48 0.65 -10.58 16 26 C -0.10 -3.06 2.45 -10.73 -0.03 -3.09 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 C -0.14 -4.00 9.03 71.98 0.65 -3.35 16 29 C 0.12 3.28 5.71 86.35 0.49 3.78 16 30 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 1.03 7.58 -2.39 -0.02 1.01 16 34 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.42 1.27 8.60 -92.70 -0.80 0.47 16 38 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 41 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 42 H 0.12 1.22 7.69 -2.39 -0.02 1.20 16 43 H 0.13 1.04 7.94 -2.39 -0.02 1.02 16 44 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.12 1.43 5.93 -2.39 -0.01 1.42 16 46 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.36 15.81 5.36 -92.70 -0.50 15.31 16 49 H 0.26 15.39 8.31 -92.70 -0.77 14.61 16 50 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.04 1.52 7.36 -2.39 -0.02 1.50 16 52 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 53 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 54 H 0.08 2.29 7.01 -2.38 -0.02 2.28 16 Total: -1.00 -82.84 424.30 2.13 -80.71 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.48 Total: 25.18 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 6.54 Total: 7.42 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -5.74 Total: -122.22 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.09 Total: -38.11 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.02 kcal Total: -82.84 2.13 -80.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667211971.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.755 kcal (2) G-P(sol) polarization free energy of solvation -82.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds