Wall clock time and date at job start Tue Mar 31 2020 23:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47539 * 2 1 4 4 C 1.52998 * 109.46944 * 120.00181 * 2 1 3 5 5 C 1.50703 * 109.47394 * 64.99692 * 4 2 1 6 6 O 1.21282 * 119.99891 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00036 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99875 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47286 * 179.97438 * 8 7 5 10 10 C 1.50697 * 109.46998 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00544 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99582 * 179.97438 * 10 9 8 13 13 C 1.46920 * 120.63323 * 359.97438 * 12 10 9 14 14 C 1.53193 * 108.77550 * 126.41030 * 13 12 10 15 15 C 1.53040 * 109.31153 * 54.63854 * 14 13 12 16 16 H 1.08997 * 109.46043 * 178.61049 * 15 14 13 17 17 N 1.46505 * 109.46056 * 58.64998 * 15 14 13 18 18 C 1.36946 * 119.99484 * 84.93338 * 17 15 14 19 19 H 1.07997 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38805 * 119.99308 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00858 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99517 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47219 * 90.00310 * 22 20 18 24 24 H 1.48501 * 109.47017 * 210.00255 * 22 20 18 25 25 H 1.48499 * 109.47275 * 330.00242 * 22 20 18 26 26 C 1.53041 * 109.53567 * 298.63320 * 15 14 13 27 27 H 1.09002 * 109.49802 * 301.41484 * 26 15 14 28 28 C 1.53003 * 109.52102 * 181.33369 * 26 15 14 29 29 C 1.46925 * 120.62853 * 180.02562 * 12 10 9 30 30 H 1.09000 * 109.47750 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47114 * 300.00624 * 1 2 3 32 32 H 1.09004 * 109.47218 * 59.99921 * 1 2 3 33 33 H 1.09002 * 109.47111 * 239.99827 * 2 1 3 34 34 H 1.09003 * 109.47065 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46920 * 299.99767 * 3 2 1 36 36 H 1.08996 * 109.46683 * 59.99580 * 3 2 1 37 37 H 1.09001 * 109.46860 * 304.99863 * 4 2 1 38 38 H 1.08997 * 109.47374 * 184.99670 * 4 2 1 39 39 H 0.97000 * 120.00539 * 359.97438 * 7 5 4 40 40 H 1.09007 * 109.47562 * 59.99734 * 8 7 5 41 41 H 1.09004 * 109.47398 * 299.99665 * 8 7 5 42 42 H 1.09001 * 109.46992 * 59.99919 * 9 8 7 43 43 H 1.08999 * 109.46675 * 299.99691 * 9 8 7 44 44 H 1.09004 * 109.58885 * 246.19960 * 13 12 10 45 45 H 1.09000 * 109.58663 * 6.48102 * 13 12 10 46 46 H 1.09005 * 109.49580 * 174.58602 * 14 13 12 47 47 H 1.08994 * 109.49562 * 294.64929 * 14 13 12 48 48 H 0.96999 * 120.00270 * 264.93201 * 17 15 14 49 49 H 0.96993 * 120.00505 * 180.02562 * 21 20 18 50 50 H 1.09001 * 109.47302 * 300.07693 * 28 26 15 51 51 H 1.08994 * 109.46897 * 60.08431 * 28 26 15 52 52 H 1.09001 * 109.46854 * 180.02562 * 28 26 15 53 53 H 1.09000 * 109.58550 * 113.80072 * 29 12 10 54 54 H 1.09005 * 109.59130 * 353.37711 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 -2.1734 1.1889 6 8 1.0107 -2.5902 0.2404 7 7 1.9842 -3.0085 2.1895 8 6 1.5971 -4.4202 2.1305 9 6 2.1069 -5.1415 3.3799 10 6 1.7081 -6.5935 3.3195 11 8 1.0786 -7.0105 2.3705 12 7 2.0520 -7.4289 4.3197 13 6 2.8160 -6.9389 5.4751 14 6 2.0657 -7.3134 6.7571 15 6 1.8058 -8.8215 6.7693 16 1 1.2938 -9.0943 7.6920 17 7 3.0816 -9.5373 6.6894 18 6 3.8011 -9.7832 7.8284 19 1 3.4278 -9.4500 8.7854 20 6 5.0096 -10.4619 7.7527 21 7 5.4643 -10.8685 6.5864 22 14 5.9907 -10.7981 9.3064 23 1 5.5776 -12.1041 9.8799 24 1 7.4386 -10.8372 8.9787 25 1 5.7360 -9.7203 10.2956 26 6 0.9329 -9.2001 5.5706 27 1 -0.0065 -8.6491 5.6162 28 6 0.6457 -10.7026 5.6016 29 6 1.6710 -8.8472 4.2749 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 1.6052 -0.2617 2.1369 38 1 3.1262 -0.6445 1.2952 39 1 2.4881 -2.6751 2.9483 40 1 2.0324 -4.8797 1.2431 41 1 0.5108 -4.4974 2.0839 42 1 1.6719 -4.6822 4.2675 43 1 3.1932 -5.0643 3.4260 44 1 3.8039 -7.3997 5.4820 45 1 2.9187 -5.8556 5.4124 46 1 2.6679 -7.0409 7.6238 47 1 1.1159 -6.7797 6.7917 48 1 3.4166 -9.8369 5.8298 49 1 6.3085 -11.3430 6.5336 50 1 1.5854 -11.2532 5.5559 51 1 0.1220 -10.9535 6.5239 52 1 0.0244 -10.9714 4.7473 53 1 2.5656 -9.4632 4.1841 54 1 1.0158 -9.0228 3.4215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667218250.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:26 Heat of formation + Delta-G solvation = -105.938306 kcal Electronic energy + Delta-G solvation = -30088.901193 eV Core-core repulsion = 26059.063767 eV Total energy + Delta-G solvation = -4029.837426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43979 -40.79792 -39.18823 -36.84894 -35.93925 -35.85248 -34.49620 -33.00143 -32.15786 -30.88560 -29.17792 -27.92636 -27.60846 -26.53818 -25.30213 -24.27644 -23.02429 -22.01112 -21.02009 -20.53271 -19.53828 -19.20689 -18.24845 -18.04255 -17.17479 -16.85993 -16.65483 -16.54547 -16.26977 -15.87024 -15.58122 -15.50551 -15.13014 -14.83327 -14.77381 -14.53395 -14.41368 -14.23045 -14.04364 -13.59429 -13.26026 -13.17905 -13.01692 -12.97237 -12.84246 -12.77066 -12.71478 -12.58574 -12.46466 -12.35559 -12.09490 -12.03112 -11.93882 -11.86476 -11.72230 -11.55982 -11.54914 -11.14034 -10.97755 -10.81560 -10.66741 -10.09734 -9.57606 -8.89836 -7.86808 -5.12789 1.50616 1.51980 1.59189 1.60349 1.69921 1.85750 2.38383 2.61377 3.46949 3.52879 3.72056 3.82206 3.89560 3.94199 3.98888 4.04218 4.07657 4.09725 4.13505 4.32598 4.41230 4.42575 4.46807 4.60499 4.70023 4.72643 4.73583 4.75277 4.76923 4.83282 4.86965 4.87931 4.93442 4.99489 5.06563 5.07567 5.14546 5.15583 5.25139 5.31828 5.33740 5.34673 5.38501 5.49529 5.52009 5.56253 5.62789 5.67068 6.34915 6.47365 6.61498 7.14292 7.33920 7.42575 8.19507 8.42529 9.36345 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.001982 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.257934 B =14126.071598 C =15020.328735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.128 4.128 5 C 0.503 3.497 6 O -0.585 6.585 7 N -0.718 5.718 8 C 0.144 3.856 9 C -0.138 4.138 10 C 0.511 3.489 11 O -0.591 6.591 12 N -0.600 5.600 13 C 0.117 3.883 14 C -0.142 4.142 15 C 0.170 3.830 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.963 3.037 23 H -0.296 1.296 24 H -0.303 1.303 25 H -0.268 1.268 26 C -0.097 4.097 27 H 0.085 0.915 28 C -0.133 4.133 29 C 0.122 3.878 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.420 0.580 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.135 0.865 43 H 0.125 0.875 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.373 0.627 49 H 0.246 0.754 50 H 0.039 0.961 51 H 0.059 0.941 52 H 0.061 0.939 53 H 0.048 0.952 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 23.732 -4.780 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 C -0.199 4.199 4 C -0.168 4.168 5 C 0.291 3.709 6 O -0.465 6.465 7 N -0.372 5.372 8 C 0.019 3.981 9 C -0.177 4.177 10 C 0.301 3.699 11 O -0.473 6.473 12 N -0.332 5.332 13 C -0.005 4.005 14 C -0.183 4.183 15 C 0.061 3.939 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.794 3.206 23 H -0.224 1.224 24 H -0.230 1.230 25 H -0.193 1.193 26 C -0.117 4.117 27 H 0.104 0.896 28 C -0.191 4.191 29 C -0.001 4.001 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.258 0.742 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.153 0.847 43 H 0.143 0.857 44 H 0.070 0.930 45 H 0.134 0.866 46 H 0.088 0.912 47 H 0.097 0.903 48 H 0.206 0.794 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.078 0.922 52 H 0.080 0.920 53 H 0.066 0.934 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.979 23.220 -5.728 25.212 hybrid contribution 1.123 -1.193 0.622 1.753 sum -6.856 22.027 -5.106 23.627 Atomic orbital electron populations 1.21930 0.95722 1.01585 1.01749 1.20873 0.95894 0.96680 0.96940 1.21811 1.01475 0.94095 1.02535 1.21831 1.04564 0.88928 1.01459 1.21501 0.78207 0.89846 0.81318 1.90692 1.41618 1.79060 1.35101 1.45884 1.58055 1.08709 1.24516 1.20718 0.99471 0.80848 0.97090 1.21794 1.05226 0.90151 1.00552 1.21015 0.78483 0.89261 0.81188 1.90692 1.42845 1.79022 1.34704 1.48175 1.54413 1.09233 1.21334 1.21766 0.94247 1.00540 0.83921 1.22387 1.00620 0.98012 0.97243 1.20469 0.86334 0.91303 0.95769 0.93611 1.42599 1.20762 1.66965 1.06249 1.19568 0.99922 1.27620 0.88448 0.90581 1.25377 0.99846 1.02642 0.98781 1.69800 1.22052 1.45954 1.24264 0.85290 0.77507 0.77821 0.80022 1.22393 1.22991 1.19280 1.21627 0.98509 0.97263 0.94332 0.89633 1.21611 1.00998 0.94786 1.01693 1.21463 0.98901 0.81238 0.98469 0.93741 0.91914 0.92964 0.92794 0.91632 0.92642 0.91357 0.86193 0.86286 0.74183 0.93562 0.92976 0.84723 0.85668 0.92969 0.86581 0.91199 0.90323 0.79383 0.94485 0.94223 0.92199 0.91997 0.93367 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.93 71.98 0.64 -1.85 16 2 C -0.08 -1.16 2.57 -10.80 -0.03 -1.19 16 3 C -0.14 -1.21 9.19 71.98 0.66 -0.55 16 4 C -0.13 -1.30 5.17 29.85 0.15 -1.15 16 5 C 0.50 9.50 7.55 87.66 0.66 10.16 16 6 O -0.58 -17.28 13.96 -3.03 -0.04 -17.32 16 7 N -0.72 -10.43 5.56 -463.04 -2.57 -13.01 16 8 C 0.14 3.05 4.96 86.38 0.43 3.48 16 9 C -0.14 -2.31 4.16 29.85 0.12 -2.18 16 10 C 0.51 14.25 7.70 87.65 0.67 14.92 16 11 O -0.59 -21.61 15.40 -3.03 -0.05 -21.66 16 12 N -0.60 -17.21 2.97 -818.81 -2.43 -19.64 16 13 C 0.12 3.03 6.08 86.36 0.53 3.56 16 14 C -0.14 -3.88 5.78 30.67 0.18 -3.71 16 15 C 0.17 5.81 2.53 45.02 0.11 5.93 16 16 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 17 N -0.72 -32.23 3.64 -322.81 -1.18 -33.40 16 18 C -0.22 -11.25 9.93 84.03 0.83 -10.42 16 19 H 0.08 3.67 7.83 -2.91 -0.02 3.65 16 20 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 21 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 22 Si 0.96 44.11 29.55 68.60 2.03 46.14 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 C -0.10 -2.99 2.67 -10.70 -0.03 -3.02 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 C -0.13 -4.17 9.06 71.98 0.65 -3.52 16 29 C 0.12 4.04 5.42 86.38 0.47 4.51 16 30 H 0.04 1.02 5.95 -2.39 -0.01 1.00 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.42 2.54 8.47 -92.71 -0.79 1.76 16 40 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 41 H 0.05 1.37 8.10 -2.38 -0.02 1.35 16 42 H 0.13 1.39 7.70 -2.39 -0.02 1.37 16 43 H 0.13 1.57 7.94 -2.39 -0.02 1.55 16 44 H 0.05 1.75 7.74 -2.38 -0.02 1.73 16 45 H 0.12 1.92 5.93 -2.39 -0.01 1.90 16 46 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.37 18.39 5.92 -92.71 -0.55 17.84 16 49 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 50 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 51 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 52 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 53 H 0.05 1.85 6.64 -2.39 -0.02 1.84 16 54 H 0.08 2.67 7.01 -2.38 -0.02 2.65 16 Total: -1.00 -74.27 419.58 2.12 -72.15 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.45 Total: 31.72 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.53 Total: 11.42 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.90 Total: -122.45 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.09 Total: -38.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.27 2.12 -72.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667218250.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.788 kcal (2) G-P(sol) polarization free energy of solvation -74.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds