Wall clock time and date at job start Tue Mar 31 2020 22:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47031 * 2 1 4 4 C 1.53003 * 109.46980 * 119.99784 * 2 1 3 5 5 C 1.53000 * 109.46985 * 65.00198 * 4 2 1 6 6 C 1.50700 * 109.46942 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99923 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00219 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00427 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47346 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99597 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99927 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99899 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.45685 * 324.96718 * 13 12 10 15 15 C 1.53042 * 109.44592 * 84.93412 * 13 12 10 16 16 C 1.52764 * 109.37896 * 181.25217 * 15 13 12 17 17 N 1.46931 * 109.01107 * 305.59286 * 16 15 13 18 18 C 1.36930 * 120.62957 * 233.58414 * 17 16 15 19 19 H 1.08004 * 119.99836 * 150.73284 * 18 17 16 20 20 C 1.38809 * 120.00040 * 331.00861 * 18 17 16 21 21 N 1.31626 * 120.00186 * 160.55216 * 20 18 17 22 22 Si 1.86805 * 120.00034 * 340.55689 * 20 18 17 23 23 H 1.48496 * 109.47280 * 92.43391 * 22 20 18 24 24 H 1.48498 * 109.46739 * 212.43532 * 22 20 18 25 25 H 1.48493 * 109.46820 * 332.43401 * 22 20 18 26 26 C 1.46923 * 118.73683 * 53.30903 * 17 16 15 27 27 H 1.08998 * 109.58902 * 66.57442 * 26 17 16 28 28 C 1.53001 * 109.58497 * 186.85884 * 26 17 16 29 29 C 1.53036 * 109.45918 * 204.99894 * 13 12 10 30 30 H 1.09007 * 109.47103 * 60.00030 * 1 2 3 31 31 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47888 * 300.00391 * 1 2 3 33 33 H 1.08992 * 109.47661 * 239.99798 * 2 1 3 34 34 H 1.09001 * 109.46884 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47084 * 299.99507 * 3 2 1 36 36 H 1.08998 * 109.46874 * 59.99859 * 3 2 1 37 37 H 1.08998 * 109.47043 * 305.00048 * 4 2 1 38 38 H 1.09004 * 109.47185 * 185.00470 * 4 2 1 39 39 H 1.08997 * 109.46866 * 60.00248 * 5 4 2 40 40 H 1.08994 * 109.47158 * 299.99660 * 5 4 2 41 41 H 0.97002 * 119.99853 * 359.97438 * 8 6 5 42 42 H 1.08998 * 109.47192 * 59.99258 * 9 8 6 43 43 H 1.09004 * 109.46871 * 299.99781 * 9 8 6 44 44 H 0.97001 * 120.00136 * 359.97438 * 12 10 9 45 45 H 1.08997 * 109.50062 * 301.32796 * 15 13 12 46 46 H 1.09002 * 109.49442 * 61.43558 * 15 13 12 47 47 H 1.08991 * 109.51134 * 185.70835 * 16 15 13 48 48 H 1.09001 * 109.42906 * 65.42307 * 16 15 13 49 49 H 0.96998 * 120.00252 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.47384 * 59.99983 * 28 26 17 51 51 H 1.09008 * 109.47113 * 180.02562 * 28 26 17 52 52 H 1.09000 * 109.47162 * 299.99591 * 28 26 17 53 53 H 1.09001 * 109.50014 * 58.67182 * 29 13 12 54 54 H 1.09000 * 109.52566 * 298.59656 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6351 -2.1954 1.1880 6 6 2.1369 -2.9057 2.4188 7 8 2.7576 -2.2931 3.2618 8 7 1.8969 -4.2217 2.5824 9 6 2.3841 -4.9121 3.7791 10 6 1.9856 -6.3642 3.7187 11 8 1.3561 -6.7812 2.7697 12 7 2.3287 -7.1993 4.7194 13 6 1.9408 -8.6109 4.6609 14 1 0.9644 -8.6997 4.1845 15 6 2.9773 -9.3909 3.8489 16 6 2.5551 -10.8565 3.7626 17 7 2.3389 -11.3731 5.1210 18 6 2.9767 -12.5080 5.5455 19 1 3.2129 -12.6354 6.5917 20 6 3.3247 -13.4921 4.6305 21 7 4.2480 -14.3788 4.9369 22 14 2.4829 -13.5580 2.9642 23 1 3.2764 -12.7819 1.9777 24 1 2.3813 -14.9702 2.5166 25 1 1.1219 -12.9743 3.0739 26 6 1.4300 -10.6454 6.0171 27 1 0.4115 -10.7079 5.6341 28 6 1.4900 -11.2593 7.4173 29 6 1.8691 -9.1791 6.0801 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6765 1.9563 0.8900 37 1 1.6053 -0.2617 2.1370 38 1 3.1262 -0.6443 1.2953 39 1 2.0698 -2.6549 0.3003 40 1 0.5489 -2.2724 1.1421 41 1 1.4008 -4.7117 1.9081 42 1 1.9484 -4.4526 4.6663 43 1 3.4704 -4.8347 3.8262 44 1 2.8326 -6.8658 5.4782 45 1 3.0446 -8.9708 2.8454 46 1 3.9489 -9.3230 4.3383 47 1 3.3398 -11.4332 3.2730 48 1 1.6305 -10.9344 3.1906 49 1 4.4915 -15.0662 4.2974 50 1 2.5081 -11.1912 7.8006 51 1 0.8148 -10.7183 8.0804 52 1 1.1894 -12.3058 7.3684 53 1 1.1478 -8.6080 6.6647 54 1 2.8509 -9.1131 6.5489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700316958.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:27 Heat of formation + Delta-G solvation = -100.391452 kcal Electronic energy + Delta-G solvation = -29646.629092 eV Core-core repulsion = 25617.032195 eV Total energy + Delta-G solvation = -4029.596897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42555 -40.57764 -39.45378 -37.48925 -36.29208 -35.45038 -34.26141 -33.36311 -32.29406 -31.79315 -29.05668 -27.97867 -27.93436 -26.41766 -25.06299 -24.29034 -22.57358 -21.58042 -21.46631 -20.97999 -20.74156 -18.85023 -18.36380 -17.76853 -17.25876 -17.15053 -17.07890 -16.43309 -16.35639 -16.23917 -15.62570 -15.37258 -15.27294 -14.99176 -14.91820 -14.58322 -14.47705 -14.31772 -14.14544 -13.93234 -13.66921 -13.50986 -13.35215 -13.04397 -12.87942 -12.74415 -12.63483 -12.62091 -12.25010 -12.21336 -12.02856 -11.89151 -11.73666 -11.68296 -11.53582 -11.50122 -11.43048 -11.38530 -11.05722 -10.94318 -10.70749 -10.26900 -10.06794 -8.89622 -8.12943 -5.45129 1.28606 1.39802 1.46062 1.47754 1.61290 1.75923 2.42677 2.43318 3.05970 3.30267 3.55768 3.75300 3.81597 3.89512 3.92278 4.00130 4.19741 4.20190 4.23480 4.29567 4.35466 4.40596 4.46084 4.55995 4.56962 4.62790 4.69001 4.71552 4.82212 4.82874 4.87652 4.92850 4.97480 5.00690 5.05260 5.07724 5.08151 5.16326 5.18889 5.21080 5.26449 5.36000 5.44411 5.48306 5.50758 5.55687 5.57932 5.93081 6.21547 6.44539 6.47398 6.94784 7.12021 7.17227 7.66634 8.07134 9.06381 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023135 B = 0.001820 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.999539 B =15379.639729 C =15996.475627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.095 4.095 5 C -0.136 4.136 6 C 0.513 3.487 7 O -0.581 6.581 8 N -0.718 5.718 9 C 0.104 3.896 10 C 0.511 3.489 11 O -0.573 6.573 12 N -0.705 5.705 13 C 0.161 3.839 14 H 0.072 0.928 15 C -0.130 4.130 16 C 0.125 3.875 17 N -0.615 5.615 18 C -0.233 4.233 19 H 0.071 0.929 20 C -0.034 4.034 21 N -0.957 5.957 22 Si 0.934 3.066 23 H -0.283 1.283 24 H -0.314 1.314 25 H -0.265 1.265 26 C 0.163 3.837 27 H 0.036 0.964 28 C -0.130 4.130 29 C -0.122 4.122 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.416 0.584 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.418 0.582 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.024 0.976 49 H 0.259 0.741 50 H 0.046 0.954 51 H 0.082 0.918 52 H 0.039 0.961 53 H 0.097 0.903 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 29.617 -5.733 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.373 5.373 9 C -0.023 4.023 10 C 0.297 3.703 11 O -0.453 6.453 12 N -0.356 5.356 13 C 0.056 3.944 14 H 0.090 0.910 15 C -0.171 4.171 16 C -0.001 4.001 17 N -0.340 5.340 18 C -0.363 4.363 19 H 0.089 0.911 20 C -0.228 4.228 21 N -0.604 5.604 22 Si 0.765 3.235 23 H -0.210 1.210 24 H -0.243 1.243 25 H -0.190 1.190 26 C 0.058 3.942 27 H 0.054 0.946 28 C -0.187 4.187 29 C -0.161 4.161 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.255 0.745 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.101 0.899 52 H 0.058 0.942 53 H 0.115 0.885 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.742 29.615 -5.814 31.158 hybrid contribution 0.113 -1.090 -0.840 1.381 sum -7.629 28.526 -6.654 30.269 Atomic orbital electron populations 1.21927 0.94705 1.02326 1.01915 1.21134 0.96334 0.96298 0.97640 1.21841 1.00939 0.95888 1.01946 1.21357 1.00856 0.92852 0.98262 1.21797 1.04222 0.96301 0.95260 1.21319 0.78560 0.81189 0.88785 1.90696 1.42439 1.66764 1.46174 1.45838 1.58094 1.09761 1.23642 1.21081 1.02152 0.88120 0.90976 1.20816 0.78672 0.88593 0.82185 1.90697 1.41857 1.78418 1.34307 1.45917 1.57040 1.08911 1.23733 1.20707 0.97428 0.79209 0.97043 0.91003 1.22156 0.99632 0.95240 1.00032 1.21182 0.97796 0.94072 0.87045 1.44644 1.51153 1.27132 1.11054 1.18929 1.28447 0.93904 0.94988 0.91093 1.25836 0.99265 0.96673 1.01032 1.69930 1.32426 1.20475 1.37586 0.86102 0.80451 0.74825 0.82151 1.21027 1.24271 1.19013 1.20703 0.91786 0.90652 0.91098 0.94628 1.21737 1.01483 1.00332 0.95143 1.22209 1.03263 0.96059 0.94596 0.92195 0.91812 0.93024 0.90362 0.92894 0.91947 0.93014 0.92506 0.92550 0.86904 0.86736 0.74582 0.86943 0.87494 0.74477 0.92240 0.91718 0.93330 0.95818 0.93239 0.93520 0.89934 0.94209 0.88483 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 71.98 0.64 -0.63 16 2 C -0.10 -0.92 2.92 -10.79 -0.03 -0.95 16 3 C -0.15 -1.46 9.19 71.98 0.66 -0.80 16 4 C -0.10 -1.25 3.97 30.60 0.12 -1.12 16 5 C -0.14 -1.56 5.46 29.85 0.16 -1.39 16 6 C 0.51 9.33 7.83 87.66 0.69 10.01 16 7 O -0.58 -14.78 15.98 -3.05 -0.05 -14.83 16 8 N -0.72 -12.18 5.53 -466.79 -2.58 -14.76 16 9 C 0.10 1.70 6.15 85.63 0.53 2.23 16 10 C 0.51 10.89 7.86 87.66 0.69 11.58 16 11 O -0.57 -16.46 15.33 -3.02 -0.05 -16.50 16 12 N -0.70 -13.93 5.08 -442.40 -2.25 -16.18 16 13 C 0.16 4.36 2.42 45.02 0.11 4.47 16 14 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 15 C -0.13 -4.38 5.63 30.53 0.17 -4.20 16 16 C 0.12 5.29 4.17 86.22 0.36 5.65 16 17 N -0.61 -27.37 2.76 -676.05 -1.86 -29.23 16 18 C -0.23 -12.56 9.04 84.03 0.76 -11.80 16 19 H 0.07 4.07 6.39 -2.91 -0.02 4.05 16 20 C -0.03 -1.94 5.24 84.86 0.44 -1.50 16 21 N -0.96 -59.55 13.97 21.65 0.30 -59.25 16 22 Si 0.93 47.12 24.35 68.60 1.67 48.79 16 23 H -0.28 -13.79 6.63 99.48 0.66 -13.14 16 24 H -0.31 -16.16 7.11 99.48 0.71 -15.46 16 25 H -0.27 -12.95 6.63 99.48 0.66 -12.29 16 26 C 0.16 5.65 3.50 44.98 0.16 5.80 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 C -0.13 -4.24 7.94 71.98 0.57 -3.67 16 29 C -0.12 -3.14 4.84 30.67 0.15 -2.99 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.45 6.57 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.06 0.89 8.10 -2.38 -0.02 0.87 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.92 6.57 -2.39 -0.02 0.91 16 41 H 0.42 6.72 7.44 -92.71 -0.69 6.03 16 42 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.42 5.62 8.60 -92.71 -0.80 4.82 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 2.31 4.62 -2.39 -0.01 2.30 16 48 H 0.02 1.02 7.04 -2.39 -0.02 1.00 16 49 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 50 H 0.05 1.62 7.44 -2.39 -0.02 1.60 16 51 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 52 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 53 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 54 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -73.40 414.97 0.68 -72.73 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.69 Total: 18.56 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.18 Total: 10.68 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.39 Total: -119.42 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.09 Total: -31.34 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.67 Total: 48.79 kcal Total: -73.40 0.68 -72.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700316958.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.666 kcal (2) G-P(sol) polarization free energy of solvation -73.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds