Wall clock time and date at job start Tue Mar 31 2020 23:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47170 * 2 1 4 4 C 1.52999 * 109.47102 * 119.99580 * 2 1 3 5 5 C 1.53003 * 109.47152 * 175.00174 * 4 2 1 6 6 C 1.50707 * 109.46927 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99813 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99834 * 179.97438 * 6 5 4 9 9 C 1.48148 * 127.83663 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.90947 * 8 6 5 30 30 H 1.08998 * 109.46916 * 300.00548 * 1 2 3 31 31 H 1.09004 * 109.46865 * 60.00535 * 1 2 3 32 32 H 1.08998 * 109.47225 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47283 * 239.99701 * 2 1 3 34 34 H 1.08996 * 109.47065 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46789 * 299.99511 * 3 2 1 36 36 H 1.08993 * 109.47262 * 59.99688 * 3 2 1 37 37 H 1.09000 * 109.47245 * 54.99783 * 4 2 1 38 38 H 1.09004 * 109.47172 * 295.00410 * 4 2 1 39 39 H 1.08996 * 109.47333 * 60.00172 * 5 4 2 40 40 H 1.08993 * 109.46862 * 299.99939 * 5 4 2 41 41 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 42 42 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 43 43 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 44 44 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 45 45 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 46 46 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 47 47 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 48 48 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 49 49 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 50 50 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 51 51 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 52 52 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 53 53 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 54 54 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1881 6 6 4.0672 -1.5407 2.4189 7 8 3.2829 -1.9208 3.2622 8 7 5.3880 -1.7530 2.5825 9 6 6.4903 -1.3667 1.6711 10 6 7.6222 -0.8924 2.6077 11 1 7.5880 0.1905 2.7278 12 6 8.9833 -1.3230 2.0575 13 6 7.3431 -1.5906 3.9550 14 1 7.1719 -0.8506 4.7369 15 6 8.5120 -2.5024 4.3336 16 7 8.2650 -3.0912 5.6566 17 6 9.3689 -3.9752 6.0539 18 6 9.0803 -4.5597 7.4126 19 8 8.0557 -4.2689 7.9927 20 7 9.9604 -5.4065 7.9826 21 6 9.6982 -5.9379 9.2189 22 1 8.7862 -5.6783 9.7358 23 6 10.6029 -6.8153 9.8041 24 7 11.7100 -7.1354 9.1727 25 14 10.2452 -7.5399 11.4883 26 1 8.9428 -7.0250 11.9823 27 1 10.1857 -9.0203 11.3878 28 1 11.3224 -7.1508 12.4334 29 6 6.0663 -2.4254 3.7171 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 1.6053 -1.7197 1.2953 38 1 1.7516 -0.1582 2.1370 39 1 3.9995 0.1676 1.1421 40 1 3.8532 -1.3939 0.3004 41 1 6.1745 -0.5554 1.0152 42 1 6.8170 -2.2254 1.0846 43 1 8.9893 -2.4024 1.9064 44 1 9.1659 -0.8220 1.1067 45 1 9.7646 -1.0511 2.7672 46 1 9.4329 -1.9201 4.3613 47 1 8.6069 -3.2974 3.5941 48 1 7.3839 -3.5827 5.6749 49 1 10.2960 -3.4034 6.0934 50 1 9.4693 -4.7805 5.3262 51 1 10.7798 -5.6394 7.5184 52 1 12.3417 -7.7476 9.5814 53 1 6.3263 -3.4500 3.4507 54 1 5.4323 -2.4114 4.6036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733542178.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:50 Heat of formation + Delta-G solvation = -117.271388 kcal Electronic energy + Delta-G solvation = -29322.299142 eV Core-core repulsion = 25291.970276 eV Total energy + Delta-G solvation = -4030.328866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31607 -40.18390 -39.41841 -37.42772 -36.59330 -35.82221 -33.97792 -33.26690 -32.15047 -31.04336 -28.59444 -27.98715 -27.48993 -26.54707 -25.54421 -24.42496 -23.34394 -21.18432 -20.84913 -20.25380 -20.06095 -19.74682 -18.20004 -17.90474 -17.23032 -16.97634 -16.64260 -16.51097 -16.25188 -15.96257 -15.74452 -15.26973 -15.21925 -15.03321 -14.85104 -14.56304 -14.17650 -14.08497 -13.72824 -13.60052 -13.49202 -13.24337 -13.11607 -13.04546 -13.02734 -12.94649 -12.76291 -12.68960 -12.61224 -12.42038 -12.24774 -12.13191 -11.73076 -11.61825 -11.53469 -11.52778 -11.47396 -11.43586 -11.33423 -10.89401 -10.35809 -10.02427 -9.80563 -9.30050 -8.48177 -5.96756 1.35374 1.40739 1.54942 1.59176 1.92634 2.04277 2.28369 2.90890 3.19085 3.40689 3.50266 3.62695 3.76118 3.85534 3.90927 3.97300 4.16457 4.17975 4.31270 4.32073 4.35573 4.43124 4.48824 4.51766 4.53216 4.56290 4.61354 4.69165 4.70736 4.78272 4.80481 4.81202 4.85829 4.93228 4.94783 5.06439 5.12509 5.14309 5.17298 5.23094 5.23894 5.33395 5.38524 5.40074 5.48678 5.54442 5.56375 5.89198 6.11718 6.36599 6.55938 6.59412 7.11818 7.12129 7.55215 8.11323 8.69381 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.001715 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.208331 B =16322.639798 C =17459.475484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.124 4.124 6 C 0.519 3.481 7 O -0.597 6.597 8 N -0.626 5.626 9 C 0.102 3.898 10 C -0.091 4.091 11 H 0.092 0.908 12 C -0.146 4.146 13 C -0.089 4.089 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.691 5.691 17 C 0.067 3.933 18 C 0.434 3.566 19 O -0.627 6.627 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.918 5.918 25 Si 0.992 3.008 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.269 1.269 29 C 0.104 3.896 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.049 0.951 48 H 0.338 0.662 49 H 0.108 0.892 50 H 0.068 0.932 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.070 0.930 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 16.133 -27.849 33.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.163 4.163 6 C 0.310 3.690 7 O -0.478 6.478 8 N -0.359 5.359 9 C -0.019 4.019 10 C -0.111 4.111 11 H 0.110 0.890 12 C -0.203 4.203 13 C -0.109 4.109 14 H 0.089 0.911 15 C -0.057 4.057 16 N -0.323 5.323 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.194 1.194 29 C -0.020 4.020 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.067 0.933 48 H 0.156 0.844 49 H 0.126 0.874 50 H 0.086 0.914 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.088 0.912 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.207 16.563 -26.663 32.711 hybrid contribution -0.039 -1.619 0.842 1.825 sum -9.246 14.944 -25.821 31.233 Atomic orbital electron populations 1.21856 0.95330 1.01649 1.01937 1.21111 0.95792 0.96779 0.97310 1.21921 1.01744 0.95217 1.01864 1.21386 0.93435 1.00489 0.98381 1.21756 0.97354 1.02515 0.94712 1.21305 0.80017 0.78726 0.88903 1.90709 1.55759 1.54253 1.47123 1.49222 1.05663 1.57744 1.23296 1.22820 0.84970 1.01798 0.92346 1.22087 0.95885 1.00822 0.92284 0.88954 1.21916 0.94629 1.01988 1.01783 1.22055 0.92986 0.97336 0.98558 0.91059 1.22271 0.98759 0.97148 0.87513 1.60122 1.04373 1.38216 1.29570 1.21529 0.96581 0.96185 0.92262 1.20999 0.84709 0.82322 0.89757 1.90501 1.29401 1.64543 1.66881 1.41925 1.20678 1.40757 1.17594 1.19696 1.06395 1.24987 0.95472 0.90606 1.26010 0.94829 0.96979 1.03259 1.69671 1.10438 1.35646 1.40163 0.84885 0.78206 0.78064 0.77250 1.20105 1.19498 1.19417 1.22374 0.93460 0.96371 0.89761 0.93425 0.91520 0.93102 0.89765 0.91383 0.91806 0.93529 0.93136 0.93327 0.86382 0.86365 0.87234 0.89310 0.92006 0.90486 0.91768 0.88814 0.93266 0.84365 0.87362 0.91413 0.76855 0.91250 0.91225 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.09 -0.95 2.92 -10.79 -0.03 -0.98 16 3 C -0.15 -1.25 8.95 71.98 0.64 -0.61 16 4 C -0.10 -1.57 3.97 30.60 0.12 -1.44 16 5 C -0.12 -1.61 4.43 29.85 0.13 -1.47 16 6 C 0.52 12.10 7.91 87.66 0.69 12.80 16 7 O -0.60 -20.63 16.25 -3.02 -0.05 -20.68 16 8 N -0.63 -12.35 3.32 -807.52 -2.68 -15.03 16 9 C 0.10 1.03 6.47 86.53 0.56 1.59 16 10 C -0.09 -1.03 3.66 -9.88 -0.04 -1.07 16 11 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 12 C -0.15 -1.20 7.94 71.98 0.57 -0.62 16 13 C -0.09 -1.75 3.30 -9.88 -0.03 -1.78 16 14 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 15 C 0.07 1.48 3.88 86.30 0.33 1.82 16 16 N -0.69 -21.87 6.13 -517.95 -3.17 -25.04 16 17 C 0.07 2.27 6.17 85.56 0.53 2.79 16 18 C 0.43 21.16 7.82 87.66 0.69 21.84 16 19 O -0.63 -36.13 15.78 -3.05 -0.05 -36.18 16 20 N -0.57 -29.81 5.29 -306.99 -1.62 -31.43 16 21 C -0.34 -19.50 9.68 84.04 0.81 -18.68 16 22 H 0.08 4.74 7.16 -2.92 -0.02 4.72 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 25 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 C 0.10 2.47 5.82 86.51 0.50 2.97 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.40 6.56 -2.39 -0.02 0.38 16 35 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 38 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.12 0.97 6.38 -2.39 -0.02 0.96 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.48 7.30 -2.39 -0.02 0.47 16 42 H 0.09 0.70 7.83 -2.39 -0.02 0.68 16 43 H 0.06 0.54 6.85 -2.39 -0.02 0.52 16 44 H 0.08 0.36 8.14 -2.38 -0.02 0.35 16 45 H 0.06 0.60 6.71 -2.39 -0.02 0.58 16 46 H 0.09 1.72 6.58 -2.39 -0.02 1.70 16 47 H 0.05 0.88 6.89 -2.39 -0.02 0.86 16 48 H 0.34 11.83 7.68 -89.69 -0.69 11.14 16 49 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.40 19.42 7.90 -92.70 -0.73 18.69 16 52 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 53 H 0.07 1.61 7.78 -2.38 -0.02 1.60 16 54 H 0.05 1.55 7.89 -2.39 -0.02 1.53 16 Total: -1.00 -78.53 424.02 0.82 -77.71 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.53 Total: 38.37 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.62 Total: 16.01 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.19 Total: -120.93 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.10 Total: -56.86 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -78.53 0.82 -77.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733542178.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.560 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds