Wall clock time and date at job start Tue Mar 31 2020 23:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34768 * 120.00029 * 2 1 4 4 O 1.21280 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00115 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47294 * 179.97438 * 5 3 2 7 7 C 1.53010 * 109.46971 * 179.97438 * 6 5 3 8 8 C 1.53005 * 109.46734 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46733 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00025 * 359.97438 * 9 8 7 11 11 N 1.34768 * 119.99791 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00029 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.46962 * 324.99816 * 12 11 9 14 14 C 1.53004 * 109.47014 * 84.99543 * 12 11 9 15 15 C 1.52998 * 109.47156 * 204.99556 * 12 11 9 16 16 H 1.09002 * 109.50166 * 299.93541 * 15 12 11 17 17 C 1.53051 * 109.49562 * 179.83700 * 15 12 11 18 18 C 1.53040 * 109.53536 * 178.68712 * 17 15 12 19 19 C 1.52759 * 109.38545 * 61.23641 * 18 17 15 20 20 N 1.46923 * 109.01237 * 305.59084 * 19 18 17 21 21 C 1.36935 * 120.62889 * 233.58434 * 20 19 18 22 22 H 1.07998 * 119.99964 * 152.10883 * 21 20 19 23 23 C 1.38806 * 119.99901 * 332.09815 * 21 20 19 24 24 N 1.31623 * 120.00510 * 335.27507 * 23 21 20 25 25 Si 1.86803 * 120.00033 * 154.99824 * 23 21 20 26 26 H 1.48499 * 109.47244 * 89.99976 * 25 23 21 27 27 H 1.48497 * 109.47129 * 210.00254 * 25 23 21 28 28 H 1.48505 * 109.46806 * 330.00107 * 25 23 21 29 29 C 1.46923 * 118.73676 * 53.30433 * 20 19 18 30 30 H 1.09005 * 109.47010 * 300.00442 * 1 2 3 31 31 H 1.08998 * 109.47348 * 59.99946 * 1 2 3 32 32 H 1.09000 * 109.47206 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99853 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.46949 * 59.99547 * 5 3 2 35 35 H 1.08998 * 109.47323 * 300.00095 * 5 3 2 36 36 H 1.08996 * 109.46901 * 60.00305 * 6 5 3 37 37 H 1.08995 * 109.47445 * 299.99749 * 6 5 3 38 38 H 1.08996 * 109.46946 * 60.00471 * 7 6 5 39 39 H 1.08995 * 109.46943 * 300.00194 * 7 6 5 40 40 H 1.08996 * 109.47141 * 60.00442 * 8 7 6 41 41 H 1.08996 * 109.47040 * 300.00091 * 8 7 6 42 42 H 0.96998 * 120.00118 * 359.97438 * 11 9 8 43 43 H 1.08994 * 109.47229 * 300.00447 * 14 12 11 44 44 H 1.09010 * 109.46915 * 60.00361 * 14 12 11 45 45 H 1.08997 * 109.47152 * 179.97438 * 14 12 11 46 46 H 1.08990 * 109.45897 * 298.70490 * 17 15 12 47 47 H 1.09000 * 109.45851 * 58.66599 * 17 15 12 48 48 H 1.08998 * 109.49326 * 181.31985 * 18 17 15 49 49 H 1.09008 * 109.49676 * 301.38061 * 18 17 15 50 50 H 1.09000 * 109.50763 * 185.70096 * 19 18 17 51 51 H 1.09006 * 109.42391 * 65.42647 * 19 18 17 52 52 H 0.97000 * 119.99468 * 353.97254 * 24 23 21 53 53 H 1.09006 * 109.58528 * 66.43357 * 29 20 19 54 54 H 1.09001 * 109.58720 * 186.85647 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1559 2.6096 -0.0002 7 6 5.6860 2.6096 0.0011 8 6 6.1959 4.0521 0.0009 9 6 7.7030 4.0520 0.0015 10 8 8.3093 3.0017 0.0024 11 7 8.3768 5.2192 0.0020 12 6 9.8418 5.2192 0.0032 13 1 10.2047 4.3774 0.5929 14 6 10.3529 5.0933 -1.4335 15 6 10.3514 6.5265 0.6131 16 1 9.9897 7.3686 0.0230 17 6 11.8819 6.5254 0.6183 18 6 12.3927 7.8464 1.1981 19 6 11.9040 7.9907 2.6382 20 7 10.4422 7.8449 2.6644 21 6 9.6557 8.8044 3.2440 22 1 8.6432 8.9534 2.8991 23 6 10.1598 9.5854 4.2749 24 7 11.1472 9.1349 5.0196 25 14 9.4421 11.2791 4.6004 26 1 8.3218 11.1643 5.5684 27 1 10.4944 12.1627 5.1635 28 1 8.9395 11.8566 3.3279 29 6 9.8400 6.6531 2.0516 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.9500 -0.8400 0.0004 34 1 4.0095 0.6530 -0.8891 35 1 4.0089 0.6535 0.8908 36 1 3.7922 3.1240 0.8893 37 1 3.7930 3.1229 -0.8906 38 1 6.0500 2.0951 -0.8882 39 1 6.0485 2.0964 0.8917 40 1 5.8320 4.5662 0.8904 41 1 5.8333 4.5656 -0.8895 42 1 7.8919 6.0592 0.0017 43 1 9.9899 4.1620 -1.8680 44 1 9.9901 5.9352 -2.0233 45 1 11.4429 5.0938 -1.4327 46 1 12.2423 5.6975 1.2286 47 1 12.2483 6.4107 -0.4019 48 1 13.4824 7.8544 1.1798 49 1 12.0127 8.6764 0.6022 50 1 12.1801 8.9738 3.0195 51 1 12.3596 7.2160 3.2550 52 1 11.4641 8.2252 4.9061 53 1 10.1239 5.7671 2.6196 54 1 8.7547 6.7539 2.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566967708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:36 Heat of formation + Delta-G solvation = -114.320161 kcal Electronic energy + Delta-G solvation = -29577.860811 eV Core-core repulsion = 25547.659920 eV Total energy + Delta-G solvation = -4030.200891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.08654 -40.67039 -39.59400 -37.00919 -36.10993 -35.54470 -34.81553 -32.77956 -32.29730 -31.56413 -29.85194 -28.21435 -27.05743 -25.86902 -24.59700 -23.79476 -22.54470 -21.72400 -21.39877 -21.30808 -20.55374 -19.37565 -18.12782 -17.92752 -17.23745 -17.06508 -16.79244 -16.42303 -16.24137 -16.10178 -15.47365 -15.44457 -15.25338 -14.95874 -14.91044 -14.80955 -14.31058 -14.15493 -13.97954 -13.80355 -13.52733 -13.44376 -13.27256 -13.10288 -12.92656 -12.67591 -12.58415 -12.50553 -12.32616 -12.21921 -12.07337 -11.93348 -11.87218 -11.72284 -11.63184 -11.50779 -11.38517 -11.11061 -10.96194 -10.72820 -10.46580 -10.13091 -10.02326 -8.93107 -8.24244 -5.40013 1.58008 1.64368 1.66025 1.70700 1.83090 2.21393 2.38759 2.65235 3.20996 3.45389 3.72816 3.81509 3.85607 3.92459 3.95312 3.99022 4.04293 4.22674 4.36286 4.38862 4.40732 4.42191 4.52313 4.52922 4.59689 4.61640 4.66757 4.74615 4.79183 4.80545 4.84591 4.86283 4.88749 4.94146 4.96454 5.02670 5.08238 5.13491 5.17493 5.23519 5.27139 5.33098 5.39621 5.42211 5.49950 5.53782 5.61710 5.83308 6.38435 6.55994 6.60728 7.05694 7.27949 7.30578 7.78157 8.23220 8.99826 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002003 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.961484 B =13975.992798 C =15833.304767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.503 3.497 4 O -0.591 6.591 5 C -0.135 4.135 6 C -0.099 4.099 7 C -0.094 4.094 8 C -0.139 4.139 9 C 0.510 3.490 10 O -0.584 6.584 11 N -0.719 5.719 12 C 0.155 3.845 13 H 0.062 0.938 14 C -0.151 4.151 15 C -0.094 4.094 16 H 0.076 0.924 17 C -0.098 4.098 18 C -0.126 4.126 19 C 0.152 3.848 20 N -0.616 5.616 21 C -0.352 4.352 22 H 0.054 0.946 23 C -0.079 4.079 24 N -0.944 5.944 25 Si 1.116 2.884 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.158 3.842 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.420 0.580 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.410 0.590 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.042 0.958 51 H -0.004 1.004 52 H 0.252 0.748 53 H -0.004 1.004 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 -18.033 -16.256 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.380 5.380 3 C 0.291 3.709 4 O -0.471 6.471 5 C -0.175 4.175 6 C -0.137 4.137 7 C -0.132 4.132 8 C -0.178 4.178 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.370 5.370 12 C 0.049 3.951 13 H 0.080 0.920 14 C -0.210 4.210 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.136 4.136 18 C -0.165 4.165 19 C 0.027 3.973 20 N -0.340 5.340 21 C -0.481 4.481 22 H 0.072 0.928 23 C -0.275 4.275 24 N -0.586 5.586 25 Si 0.940 3.060 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.198 1.198 29 C 0.032 3.968 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.256 0.744 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.246 0.754 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.061 0.939 51 H 0.014 0.986 52 H 0.062 0.938 53 H 0.014 0.986 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.420 -16.670 -15.334 26.327 hybrid contribution -0.108 -1.337 -0.202 1.356 sum -13.528 -18.007 -15.535 27.361 Atomic orbital electron populations 1.21638 0.79384 1.04061 1.01151 1.45832 1.08246 1.08998 1.74948 1.21330 0.91568 0.83404 0.74548 1.90698 1.71733 1.33202 1.51487 1.21696 0.89506 0.99754 1.06547 1.21265 0.94028 0.95660 1.02786 1.21243 0.94277 0.94666 1.03038 1.21738 0.89410 1.00654 1.06043 1.21258 0.91446 0.83035 0.74404 1.90652 1.71589 1.32541 1.51714 1.46153 1.07172 1.09187 1.74506 1.20821 0.79908 0.97038 0.97288 0.92002 1.22112 1.02182 1.01902 0.94767 1.21730 0.96856 0.96538 0.96289 0.90548 1.21452 0.93825 0.96710 1.01613 1.21852 1.00147 0.98129 0.96349 1.20763 0.83730 0.97985 0.94865 1.44352 1.01978 1.20933 1.66786 1.20235 0.98785 1.14458 1.14647 0.92848 1.27206 0.99755 1.08440 0.92136 1.70876 1.31716 1.18181 1.37872 0.82867 0.74926 0.72017 0.76186 1.21125 1.21742 1.19834 1.20948 0.96362 0.87433 0.92031 0.93624 0.93391 0.87222 0.74376 0.86456 0.86975 0.92417 0.91661 0.91176 0.92125 0.88003 0.86711 0.75444 0.93146 0.91348 0.90302 0.93057 0.89147 0.90738 0.92484 0.93902 0.98570 0.93810 0.98637 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.70 127.77 1.37 2.14 16 2 N -0.73 -7.31 5.71 -484.53 -2.77 -10.08 16 3 C 0.50 8.48 7.83 87.66 0.69 9.17 16 4 O -0.59 -15.85 15.98 -3.03 -0.05 -15.90 16 5 C -0.14 -1.57 5.70 29.85 0.17 -1.40 16 6 C -0.10 -1.58 4.50 30.60 0.14 -1.44 16 7 C -0.09 -1.63 4.50 30.60 0.14 -1.49 16 8 C -0.14 -2.52 5.70 29.85 0.17 -2.35 16 9 C 0.51 13.04 7.79 87.66 0.68 13.73 16 10 O -0.58 -19.15 15.64 -3.03 -0.05 -19.20 16 11 N -0.72 -17.67 4.47 -442.54 -1.98 -19.65 16 12 C 0.15 4.19 2.16 44.99 0.10 4.29 16 13 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 14 C -0.15 -3.36 9.14 71.98 0.66 -2.70 16 15 C -0.09 -2.92 1.97 -10.71 -0.02 -2.94 16 16 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.10 -2.95 4.86 30.62 0.15 -2.80 16 18 C -0.13 -4.48 6.06 30.53 0.19 -4.30 16 19 C 0.15 7.24 4.66 86.22 0.40 7.65 16 20 N -0.62 -30.87 2.86 -699.94 -2.00 -32.86 16 21 C -0.35 -19.59 9.49 84.03 0.80 -18.80 16 22 H 0.05 2.94 7.94 -2.91 -0.02 2.91 16 23 C -0.08 -4.55 4.69 84.86 0.40 -4.15 16 24 N -0.94 -58.37 12.40 21.65 0.27 -58.10 16 25 Si 1.12 51.05 29.99 68.60 2.06 53.11 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 C 0.16 6.50 5.56 86.36 0.48 6.98 16 30 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.42 1.21 8.83 -92.71 -0.82 0.39 16 34 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 38 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 39 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.41 8.70 8.42 -92.71 -0.78 7.92 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.08 1.57 6.40 -2.39 -0.02 1.56 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.09 2.13 6.36 -2.39 -0.02 2.11 16 48 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 50 H 0.04 2.32 6.30 -2.39 -0.02 2.30 16 51 H 0.00 -0.18 7.87 -2.38 -0.02 -0.20 16 52 H 0.25 16.01 6.71 -92.71 -0.62 15.38 16 53 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 54 H 0.05 2.10 7.44 -2.39 -0.02 2.08 16 Total: -1.00 -79.95 423.94 1.41 -78.54 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.57 Total: 22.55 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.50 Total: 1.59 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -6.48 Total: -120.68 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.10 Total: -35.10 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.11 kcal Total: -79.95 1.41 -78.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566967708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.779 kcal (2) G-P(sol) polarization free energy of solvation -79.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds