Wall clock time and date at job start Wed Apr 1 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46493 * 109.47174 * 2 1 4 4 C 1.46506 * 119.99968 * 269.99950 * 3 2 1 5 5 C 1.52998 * 109.47050 * 270.00346 * 4 3 2 6 6 C 1.34773 * 120.00173 * 90.00312 * 3 2 1 7 7 O 1.21280 * 120.00120 * 179.97438 * 6 3 2 8 8 C 1.50704 * 119.99853 * 359.97438 * 6 3 2 9 9 C 1.52999 * 109.46859 * 179.97438 * 8 6 3 10 10 C 1.53007 * 109.46899 * 179.97438 * 9 8 6 11 11 C 1.53119 * 109.52018 * 185.00022 * 10 9 8 12 12 C 1.53039 * 109.27478 * 182.37728 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47241 * 90.00085 * 22 20 18 24 24 H 1.48497 * 109.47231 * 210.00154 * 22 20 18 25 25 H 1.48508 * 109.47072 * 330.00134 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.08999 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46641 * 299.99848 * 1 2 3 30 30 H 1.08990 * 109.47345 * 59.99732 * 1 2 3 31 31 H 1.09000 * 109.46836 * 239.99636 * 2 1 3 32 32 H 1.09000 * 109.47350 * 120.00435 * 2 1 3 33 33 H 1.09001 * 109.47108 * 30.00344 * 4 3 2 34 34 H 1.08997 * 109.46969 * 150.00189 * 4 3 2 35 35 H 1.09001 * 109.47163 * 299.99964 * 5 4 3 36 36 H 1.08997 * 109.47362 * 60.00084 * 5 4 3 37 37 H 1.09006 * 109.47100 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.46857 * 60.00147 * 8 6 3 39 39 H 1.09000 * 109.47137 * 299.99852 * 8 6 3 40 40 H 1.09001 * 109.47218 * 60.00427 * 9 8 6 41 41 H 1.09001 * 109.47694 * 299.99943 * 9 8 6 42 42 H 1.08994 * 109.52117 * 305.13031 * 10 9 8 43 43 H 1.08998 * 109.50519 * 62.44416 * 11 10 9 44 44 H 1.08998 * 109.53606 * 302.33541 * 11 10 9 45 45 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 46 46 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 47 47 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 48 48 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 49 49 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 50 50 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 52 52 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 53 53 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 54 54 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.7075 1.8313 -1.7105 6 6 2.2431 2.0165 1.1671 7 8 2.6478 3.1598 1.1671 8 6 1.9914 1.3062 2.4723 9 6 2.3236 2.2434 3.6351 10 6 2.0675 1.5225 4.9602 11 6 2.2795 2.4970 6.1221 12 6 2.0801 1.7556 7.4460 13 7 3.0359 0.6443 7.5351 14 6 2.9676 -0.0046 8.8512 15 6 3.4455 0.9553 9.9100 16 8 3.9135 2.0276 9.5898 17 7 3.3528 0.6225 11.2127 18 6 3.7880 1.4957 12.1760 19 1 4.2047 2.4503 11.8909 20 6 3.6929 1.1523 13.5191 21 7 3.1863 -0.0096 13.8659 22 14 4.2852 2.3422 14.8315 23 1 3.1660 3.2307 15.2355 24 1 4.7624 1.5790 16.0126 25 1 5.3980 3.1628 14.2898 26 6 2.8207 -0.3288 6.4566 27 6 3.0423 0.3503 5.1032 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 4.3884 2.2153 -0.9508 36 1 3.8745 0.7621 -1.8408 37 1 3.8894 2.3455 -2.6543 38 1 2.6213 0.4185 2.5301 39 1 0.9433 1.0125 2.5299 40 1 1.6941 3.1313 3.5775 41 1 3.3718 2.5368 3.5774 42 1 1.0436 1.1494 4.9799 43 1 1.5595 3.3121 6.0495 44 1 3.2913 2.9002 6.0797 45 1 1.0636 1.3651 7.4940 46 1 2.2445 2.4434 8.2756 47 1 3.6013 -0.8915 8.8522 48 1 1.9378 -0.2936 9.0608 49 1 2.9788 -0.2351 11.4688 50 1 3.1202 -0.2495 14.8034 51 1 3.5229 -1.1551 6.5676 52 1 1.8007 -0.7096 6.5092 53 1 2.8671 -0.3683 4.3025 54 1 4.0663 0.7192 5.0444 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182572333.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:56 Heat of formation + Delta-G solvation = -111.828470 kcal Electronic energy + Delta-G solvation = -29777.757271 eV Core-core repulsion = 25747.664428 eV Total energy + Delta-G solvation = -4030.092843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.14219 -40.59974 -39.32291 -37.24137 -36.26825 -35.68445 -33.41977 -33.20733 -32.03945 -31.59448 -30.37164 -28.76763 -26.82858 -25.43884 -24.42439 -24.19146 -23.54614 -22.04180 -20.98551 -20.58193 -19.87003 -19.73219 -18.06531 -17.74331 -17.36649 -16.79569 -16.64309 -16.44756 -16.23849 -15.64548 -15.48355 -15.28365 -15.12525 -14.86039 -14.81128 -14.75448 -14.38024 -14.18563 -13.78742 -13.59588 -13.47698 -13.40873 -13.37699 -13.13137 -13.02383 -12.83757 -12.78975 -12.55087 -12.41383 -12.35342 -12.15590 -12.12908 -12.04682 -11.90787 -11.83398 -11.49773 -11.49194 -11.19165 -11.03361 -10.73159 -10.23897 -9.98327 -9.68706 -9.10496 -8.45705 -5.94063 1.37627 1.41019 1.53893 1.66510 2.07000 2.07860 2.29234 2.83675 3.21147 3.42131 3.54885 3.79232 3.89961 3.94415 4.08018 4.16696 4.24649 4.25324 4.28737 4.31161 4.40827 4.49126 4.50049 4.50427 4.55678 4.59493 4.61552 4.66264 4.67712 4.71705 4.77775 4.84719 4.93595 4.96101 5.03099 5.04439 5.05315 5.11190 5.20767 5.24490 5.26552 5.32245 5.38834 5.41635 5.42535 5.60246 5.67161 5.94395 6.15902 6.35796 6.43106 6.62959 7.14731 7.22853 7.58672 8.15509 8.71769 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.001696 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.289012 B =16506.212961 C =16927.027947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.614 5.614 4 C 0.106 3.894 5 C -0.161 4.161 6 C 0.504 3.496 7 O -0.591 6.591 8 C -0.131 4.131 9 C -0.090 4.090 10 C -0.076 4.076 11 C -0.104 4.104 12 C 0.061 3.939 13 N -0.538 5.538 14 C 0.059 3.941 15 C 0.440 3.560 16 O -0.616 6.616 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.275 1.275 26 C 0.053 3.947 27 C -0.106 4.106 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.111 0.889 48 H 0.065 0.935 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.083 0.917 52 H 0.047 0.953 53 H 0.102 0.898 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 -8.049 -30.917 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.347 5.347 4 C -0.017 4.017 5 C -0.219 4.219 6 C 0.295 3.705 7 O -0.471 6.471 8 C -0.170 4.170 9 C -0.128 4.128 10 C -0.095 4.095 11 C -0.142 4.142 12 C -0.067 4.067 13 N -0.264 5.264 14 C -0.072 4.072 15 C 0.227 3.773 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.200 1.200 26 C -0.074 4.074 27 C -0.143 4.143 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.129 0.871 48 H 0.083 0.917 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.102 0.898 52 H 0.065 0.935 53 H 0.120 0.880 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.146 -6.657 -31.030 32.530 hybrid contribution -0.467 0.267 1.327 1.432 sum -7.613 -6.390 -29.702 31.321 Atomic orbital electron populations 1.22201 0.95203 1.03410 1.02030 1.21869 0.94901 0.80516 1.05143 1.48248 1.65360 1.15565 1.05484 1.21471 0.97438 0.97540 0.85215 1.22067 0.95999 1.02617 1.01243 1.21350 0.76052 0.86187 0.86959 1.90686 1.47798 1.20449 1.88213 1.21792 1.05521 0.99981 0.89709 1.21238 1.01261 0.97697 0.92616 1.21160 1.00347 0.95226 0.92732 1.21537 1.01283 0.97994 0.93382 1.22020 0.92486 0.93534 0.98685 1.61452 1.52749 1.10725 1.01470 1.21712 1.01124 0.96014 0.88360 1.20883 0.83626 0.89073 0.83717 1.90485 1.50793 1.26856 1.82003 1.41945 1.55942 1.18799 1.04658 1.19638 1.39549 1.00161 0.86859 0.90571 1.26007 0.97051 0.98644 0.99531 1.69668 1.45446 1.21835 1.19183 0.84947 0.78489 0.77754 0.77244 1.19670 1.19393 1.20003 1.22250 1.00553 0.93975 0.90578 1.21691 0.99275 0.97355 0.96014 0.89556 0.93031 0.92836 0.88525 0.88550 0.88058 0.92478 0.95023 0.91195 0.90475 0.86423 0.86579 0.92845 0.93421 0.89558 0.91391 0.93534 0.94605 0.93441 0.87139 0.91734 0.77041 0.91332 0.89812 0.93496 0.87978 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 71.98 0.74 -0.03 16 2 C 0.10 0.50 5.93 86.38 0.51 1.02 16 3 N -0.61 -7.97 2.47 -821.81 -2.03 -10.00 16 4 C 0.11 1.33 6.13 86.38 0.53 1.86 16 5 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 6 C 0.50 9.80 7.67 87.66 0.67 10.47 16 7 O -0.59 -17.51 15.56 -3.03 -0.05 -17.56 16 8 C -0.13 -1.77 4.01 29.85 0.12 -1.65 16 9 C -0.09 -1.82 3.98 30.60 0.12 -1.70 16 10 C -0.08 -1.52 2.25 -10.71 -0.02 -1.55 16 11 C -0.10 -2.95 5.38 30.65 0.16 -2.79 16 12 C 0.06 2.04 5.12 86.33 0.44 2.48 16 13 N -0.54 -17.88 4.35 -900.94 -3.92 -21.80 16 14 C 0.06 2.10 5.45 85.56 0.47 2.57 16 15 C 0.44 21.64 7.31 87.66 0.64 22.28 16 16 O -0.62 -35.39 14.29 -3.07 -0.04 -35.43 16 17 N -0.58 -30.28 5.29 -306.98 -1.62 -31.90 16 18 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 20 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 22 Si 0.99 43.85 29.55 68.60 2.03 45.88 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.05 1.20 5.46 86.33 0.47 1.67 16 27 C -0.11 -1.99 5.08 30.65 0.16 -1.83 16 28 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.05 0.34 7.22 -2.39 -0.02 0.32 16 30 H 0.05 0.30 8.14 -2.39 -0.02 0.29 16 31 H 0.10 0.21 8.07 -2.39 -0.02 0.19 16 32 H 0.10 0.26 6.44 -2.39 -0.02 0.24 16 33 H 0.10 0.70 8.07 -2.39 -0.02 0.68 16 34 H 0.06 1.02 7.42 -2.39 -0.02 1.00 16 35 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.12 1.06 5.90 -2.39 -0.01 1.04 16 39 H 0.12 1.04 7.18 -2.39 -0.02 1.02 16 40 H 0.05 1.23 8.10 -2.39 -0.02 1.22 16 41 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 45 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.05 2.05 6.06 -2.39 -0.01 2.04 16 47 H 0.11 3.43 7.98 -2.39 -0.02 3.42 16 48 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 49 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 51 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 52 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 53 H 0.10 1.14 6.71 -2.39 -0.02 1.13 16 54 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.40 421.60 1.81 -76.59 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: 0.14 Total: 31.29 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.03 Total: 12.89 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -7.29 Total: -113.66 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.09 Total: -52.99 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.40 1.81 -76.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182572333.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.238 kcal (2) G-P(sol) polarization free energy of solvation -78.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds