Wall clock time and date at job start Wed Apr 1 2020 00:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47520 * 2 1 4 4 C 1.46899 * 111.00034 * 296.96161 * 3 2 1 5 5 C 1.53001 * 109.46951 * 288.56479 * 4 3 2 6 6 C 1.46903 * 111.00008 * 60.91234 * 3 2 1 7 7 H 1.09000 * 110.88787 * 303.88503 * 6 3 2 8 8 C 1.55156 * 111.00784 * 179.97438 * 6 3 2 9 9 C 1.54321 * 102.94296 * 206.38507 * 8 6 3 10 10 N 1.47016 * 107.27063 * 22.19515 * 9 8 6 11 11 C 1.34780 * 125.64507 * 181.01942 * 10 9 8 12 12 O 1.21352 * 119.99790 * 180.02562 * 11 10 9 13 13 C 1.49451 * 120.00068 * 0.02562 * 11 10 9 14 14 O 1.21338 * 120.00039 * 359.97438 * 13 11 10 15 15 N 1.34782 * 119.99735 * 179.97438 * 13 11 10 16 16 C 1.46496 * 119.99560 * 179.97438 * 15 13 11 17 17 C 1.53003 * 109.46919 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47292 * 300.00444 * 17 16 15 19 19 C 1.53006 * 109.46682 * 60.00414 * 17 16 15 20 20 C 1.50702 * 109.47346 * 180.02562 * 17 16 15 21 21 H 1.08007 * 119.99695 * 359.97438 * 20 17 16 22 22 C 1.37873 * 120.00371 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99797 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00130 * 179.97438 * 22 20 17 25 25 H 1.48500 * 109.47210 * 60.00103 * 24 22 20 26 26 H 1.48505 * 109.46994 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47322 * 299.99738 * 24 22 20 28 28 C 1.47425 * 108.70781 * 1.28572 * 10 9 8 29 29 H 1.08992 * 109.47319 * 183.67127 * 1 2 3 30 30 H 1.09003 * 109.46773 * 303.67615 * 1 2 3 31 31 H 1.08997 * 109.46467 * 63.67004 * 1 2 3 32 32 H 1.09000 * 109.46994 * 239.99679 * 2 1 3 33 33 H 1.09003 * 109.46922 * 120.00115 * 2 1 3 34 34 H 1.08994 * 109.47204 * 48.56440 * 4 3 2 35 35 H 1.09003 * 109.47289 * 168.56907 * 4 3 2 36 36 H 1.09000 * 109.47094 * 301.60450 * 5 4 3 37 37 H 1.09002 * 109.46931 * 61.60370 * 5 4 3 38 38 H 1.08997 * 109.47131 * 181.60662 * 5 4 3 39 39 H 1.08997 * 110.71607 * 88.02274 * 8 6 3 40 40 H 1.09000 * 110.87062 * 324.82485 * 8 6 3 41 41 H 1.08999 * 109.88242 * 262.77357 * 9 8 6 42 42 H 1.09004 * 109.87875 * 141.61044 * 9 8 6 43 43 H 0.96997 * 120.00314 * 0.02562 * 15 13 11 44 44 H 1.09004 * 109.47145 * 60.00512 * 16 15 13 45 45 H 1.09000 * 109.47448 * 300.00008 * 16 15 13 46 46 H 1.08995 * 109.47068 * 60.00002 * 18 17 16 47 47 H 1.08997 * 109.46822 * 180.02562 * 18 17 16 48 48 H 1.09003 * 109.46658 * 299.99502 * 18 17 16 49 49 H 1.09000 * 109.47422 * 60.00045 * 19 17 16 50 50 H 1.09000 * 109.46764 * 180.02562 * 19 17 16 51 51 H 1.08998 * 109.46746 * 299.99494 * 19 17 16 52 52 H 0.96995 * 120.00140 * 180.02562 * 23 22 20 53 53 H 1.08995 * 110.36708 * 94.48000 * 28 10 9 54 54 H 1.08997 * 110.36733 * 216.80842 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6091 2.0885 -1.2224 5 6 2.4023 1.5471 -2.4134 6 6 1.5667 2.1035 1.1985 7 1 0.4804 2.0732 1.2824 8 6 2.0845 3.5662 1.1990 9 6 2.1326 3.9153 2.7014 10 7 2.2098 2.6475 3.4418 11 6 2.2495 2.5226 4.7832 12 8 2.3136 1.4210 5.2883 13 6 2.2145 3.7406 5.6486 14 8 2.1509 4.8420 5.1435 15 7 2.2537 3.6155 6.9900 16 6 2.2200 4.8094 7.8382 17 6 2.2751 4.3918 9.3091 18 6 1.0728 3.5024 9.6322 19 6 3.5680 3.6165 9.5709 20 6 2.2398 5.6199 10.1818 21 1 2.1841 6.6004 9.7321 22 6 2.2798 5.4921 11.5540 23 7 2.3492 4.2982 12.1014 24 14 2.2367 7.0144 12.6355 25 1 0.9817 7.7667 12.3817 26 1 2.2901 6.6090 14.0632 27 1 3.4035 7.8778 12.3217 28 6 2.2432 1.5360 2.4740 29 1 -0.3633 -1.0255 0.0658 30 1 -0.3633 0.5699 0.8552 31 1 -0.3632 0.4558 -0.9211 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.5443 1.9298 -1.3926 35 1 1.8042 3.1551 -1.1106 36 1 3.4686 1.6801 -2.2304 37 1 2.1853 0.4867 -2.5426 38 1 2.1182 2.0887 -3.3156 39 1 1.3900 4.2212 0.6729 40 1 3.0790 3.6262 0.7570 41 1 1.2298 4.4561 2.9854 42 1 3.0129 4.5223 2.9129 43 1 2.3049 2.7350 7.3938 44 1 1.2987 5.3615 7.6520 45 1 3.0763 5.4432 7.6077 46 1 1.0980 2.6141 9.0011 47 1 1.1119 3.2053 10.6802 48 1 0.1518 4.0548 9.4457 49 1 4.4246 4.2501 9.3407 50 1 3.6071 3.3186 10.6187 51 1 3.5930 2.7282 8.9398 52 1 2.3769 4.2082 13.0667 53 1 3.2728 1.2470 2.2636 54 1 1.6795 0.6843 2.8549 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422487708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:51 Heat of formation + Delta-G solvation = -78.683553 kcal Electronic energy + Delta-G solvation = -30560.726236 eV Core-core repulsion = 26532.070664 eV Total energy + Delta-G solvation = -4028.655571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92622 -40.47682 -39.39301 -38.23593 -37.54450 -35.06756 -32.77893 -32.56897 -32.42969 -30.25706 -28.89031 -27.73953 -27.59784 -27.17094 -25.69015 -24.59427 -23.03960 -22.66957 -21.02657 -20.60107 -20.36267 -19.02209 -18.24180 -17.90853 -17.60942 -17.02877 -16.68475 -16.51559 -16.28544 -16.03886 -15.61071 -15.33555 -15.05433 -14.79989 -14.75777 -14.43593 -14.23645 -14.05038 -13.96393 -13.86608 -13.61334 -13.21487 -13.13967 -13.08369 -12.88264 -12.81638 -12.68567 -12.61896 -12.54702 -12.30965 -12.27916 -12.12267 -12.07454 -11.92678 -11.63723 -11.51303 -11.33779 -11.29474 -10.76537 -10.59876 -10.40772 -10.16748 -9.88713 -9.27304 -8.01048 -6.17690 0.31475 1.19677 1.46372 1.47391 1.53997 2.09922 2.39683 2.51206 2.91188 3.22592 3.25094 3.48429 3.59997 3.95274 4.10646 4.22811 4.25478 4.29048 4.33896 4.38244 4.44695 4.46770 4.53175 4.59751 4.66971 4.72592 4.72662 4.83182 4.86533 4.89858 4.92478 5.00586 5.03053 5.04004 5.06840 5.16265 5.16685 5.18090 5.19753 5.22875 5.28708 5.47405 5.49158 5.63841 5.67341 5.95586 6.09416 6.10143 6.14219 6.18047 6.23737 6.40685 6.63063 6.85615 6.94294 7.50059 8.98062 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.001980 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.617860 B =14134.523770 C =14581.205637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.041 3.959 5 C -0.143 4.143 6 C 0.074 3.926 7 H 0.066 0.934 8 C -0.115 4.115 9 C 0.106 3.894 10 N -0.588 5.588 11 C 0.522 3.478 12 O -0.547 6.547 13 C 0.500 3.500 14 O -0.540 6.540 15 N -0.682 5.682 16 C 0.145 3.855 17 C 0.049 3.951 18 C -0.123 4.123 19 C -0.123 4.123 20 C -0.525 4.525 21 H 0.052 0.948 22 C 0.025 3.975 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C 0.115 3.885 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.412 0.588 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.023 0.977 49 H 0.023 0.977 50 H 0.064 0.936 51 H 0.028 0.972 52 H 0.260 0.740 53 H 0.084 0.916 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 -6.794 -28.599 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.084 4.084 3 N -0.253 5.253 4 C -0.086 4.086 5 C -0.201 4.201 6 C -0.035 4.035 7 H 0.084 0.916 8 C -0.153 4.153 9 C -0.016 4.016 10 N -0.322 5.322 11 C 0.305 3.695 12 O -0.425 6.425 13 C 0.280 3.720 14 O -0.418 6.418 15 N -0.334 5.334 16 C 0.023 3.977 17 C 0.049 3.951 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.563 4.563 21 H 0.070 0.930 22 C -0.175 4.175 23 N -0.540 5.540 24 Si 0.776 3.224 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.007 4.007 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.249 0.751 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.043 0.957 49 H 0.043 0.957 50 H 0.082 0.918 51 H 0.047 0.953 52 H 0.069 0.931 53 H 0.103 0.897 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.666 -6.686 -28.410 29.233 hybrid contribution -0.863 0.354 1.352 1.642 sum -2.528 -6.332 -27.058 27.904 Atomic orbital electron populations 1.22385 0.97842 1.02850 1.01832 1.22259 0.93240 0.89548 1.03353 1.62244 1.59420 1.02450 1.01182 1.22248 0.98135 0.99073 0.89145 1.21733 1.00552 1.01109 0.96673 1.22733 0.97566 0.93930 0.89287 0.91585 1.22806 1.04090 0.94993 0.93395 1.22301 1.03240 0.84554 0.91488 1.48237 1.69249 1.10992 1.03685 1.19817 0.78296 0.88900 0.82536 1.90745 1.50289 1.27769 1.73672 1.20124 0.78781 0.89267 0.83783 1.90693 1.49736 1.27466 1.73944 1.46065 1.70170 1.12290 1.04917 1.21544 1.00371 0.85291 0.90536 1.18396 0.93256 0.94763 0.88731 1.21698 0.97163 0.97037 1.02185 1.21702 0.97109 0.97169 1.02129 1.21194 1.51183 0.92468 0.91502 0.92957 1.25520 0.94706 0.98228 0.99052 1.69922 1.50411 1.22707 1.10921 0.85752 0.78532 0.80361 0.77762 1.20075 1.21166 1.20076 1.22410 1.02248 0.88830 0.87218 0.91436 0.93307 0.91835 0.89305 0.91080 0.93822 0.89864 0.92507 0.92771 0.91340 0.87775 0.88642 0.90808 0.90788 0.75061 0.92652 0.92669 0.95328 0.91780 0.95744 0.95748 0.91766 0.95335 0.93057 0.89747 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 9.29 71.98 0.67 -1.35 16 2 C 0.04 0.49 5.78 86.31 0.50 0.99 16 3 N -0.53 -6.40 4.57 -862.41 -3.94 -10.33 16 4 C 0.04 0.38 5.42 86.30 0.47 0.85 16 5 C -0.14 -1.16 9.92 71.98 0.71 -0.44 16 6 C 0.07 1.06 2.40 46.39 0.11 1.17 16 7 H 0.07 0.98 6.16 -2.39 -0.01 0.96 16 8 C -0.11 -1.51 5.05 31.78 0.16 -1.35 16 9 C 0.11 2.21 5.49 86.73 0.48 2.69 16 10 N -0.59 -14.89 3.32 -812.93 -2.70 -17.59 16 11 C 0.52 16.85 7.91 87.27 0.69 17.54 16 12 O -0.55 -19.84 16.73 -3.25 -0.05 -19.89 16 13 C 0.50 17.78 7.86 87.27 0.69 18.46 16 14 O -0.54 -20.16 14.12 -3.21 -0.05 -20.20 16 15 N -0.68 -25.58 4.95 -464.41 -2.30 -27.88 16 16 C 0.15 6.09 4.50 86.38 0.39 6.48 16 17 C 0.05 2.30 0.50 -52.92 -0.03 2.28 16 18 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 19 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 20 C -0.52 -27.38 8.01 25.60 0.21 -27.17 16 21 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 22 C 0.02 1.30 5.15 84.65 0.44 1.73 16 23 N -0.90 -48.58 9.35 21.45 0.20 -48.38 16 24 Si 0.95 42.35 29.54 68.60 2.03 44.37 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 C 0.11 2.29 5.65 86.93 0.49 2.78 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.62 6.17 -2.39 -0.01 0.61 16 31 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 32 H 0.09 0.84 6.60 -2.39 -0.02 0.83 16 33 H 0.07 0.90 7.31 -2.39 -0.02 0.88 16 34 H 0.04 0.39 5.97 -2.39 -0.01 0.38 16 35 H 0.08 0.69 6.33 -2.39 -0.02 0.67 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.43 6.75 -2.39 -0.02 0.42 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.10 0.97 7.78 -2.39 -0.02 0.95 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 42 H 0.07 1.68 7.69 -2.38 -0.02 1.66 16 43 H 0.41 15.25 5.63 -92.71 -0.52 14.73 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 47 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 48 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 51 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 52 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 53 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 54 H 0.07 1.56 7.90 -2.39 -0.02 1.54 16 Total: -1.00 -59.44 406.49 0.69 -58.76 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.37 Total: 26.70 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 7.13 Total: 14.46 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -8.74 Total: -104.19 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -0.10 Total: -40.10 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Total: -59.44 0.69 -58.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422487708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.928 kcal (2) G-P(sol) polarization free energy of solvation -59.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds