Wall clock time and date at job start Tue Mar 31 2020 23:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47454 * 2 1 4 4 C 1.47012 * 110.99929 * 70.48762 * 3 2 1 5 5 C 1.53101 * 109.25775 * 177.60692 * 4 3 2 6 6 O 1.43018 * 109.25489 * 56.84997 * 5 4 3 7 7 C 1.43009 * 113.73875 * 301.32825 * 6 5 4 8 8 C 1.47009 * 110.99898 * 306.85246 * 3 2 1 9 9 H 1.08999 * 109.50890 * 62.45651 * 8 3 2 10 10 C 1.50698 * 109.50852 * 302.36992 * 8 3 2 11 11 O 1.21287 * 120.00111 * 331.34646 * 10 8 3 12 12 N 1.34778 * 120.00085 * 151.34436 * 10 8 3 13 13 C 1.46497 * 120.00202 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.45881 * 35.00038 * 13 12 10 15 15 C 1.53048 * 109.46113 * 275.03218 * 13 12 10 16 16 C 1.53196 * 109.31228 * 178.60058 * 15 13 12 17 17 N 1.46930 * 108.76339 * 54.65465 * 16 15 13 18 18 C 1.36936 * 120.62698 * 126.36393 * 17 16 15 19 19 H 1.07995 * 120.00271 * 330.44765 * 18 17 16 20 20 C 1.38811 * 119.99687 * 150.45329 * 18 17 16 21 21 N 1.31621 * 120.00253 * 345.49775 * 20 18 17 22 22 Si 1.86800 * 120.00061 * 165.49690 * 20 18 17 23 23 H 1.48497 * 109.47100 * 59.99753 * 22 20 18 24 24 H 1.48498 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.46688 * 299.99725 * 22 20 18 26 26 C 1.46918 * 118.73655 * 306.37902 * 17 16 15 27 27 C 1.53042 * 109.46135 * 154.97476 * 13 12 10 28 28 C 1.52992 * 109.49774 * 301.33607 * 27 13 12 29 29 C 1.53002 * 109.49595 * 61.43796 * 27 13 12 30 30 H 1.09004 * 109.47161 * 300.00247 * 1 2 3 31 31 H 1.09003 * 109.46996 * 59.99567 * 1 2 3 32 32 H 1.08998 * 109.47595 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47161 * 239.99753 * 2 1 3 34 34 H 1.09003 * 109.46996 * 120.00433 * 2 1 3 35 35 H 1.09003 * 109.50566 * 57.67246 * 4 3 2 36 36 H 1.09001 * 109.50835 * 297.54401 * 4 3 2 37 37 H 1.09001 * 109.50568 * 176.78599 * 5 4 3 38 38 H 1.08997 * 109.50682 * 296.91335 * 5 4 3 39 39 H 1.09003 * 109.50851 * 298.73938 * 7 6 5 40 40 H 1.09005 * 109.50776 * 178.60830 * 7 6 5 41 41 H 0.97006 * 119.99893 * 0.02562 * 12 10 8 42 42 H 1.09001 * 109.49194 * 298.56124 * 15 13 12 43 43 H 1.08992 * 109.49801 * 58.65880 * 15 13 12 44 44 H 1.09000 * 109.59514 * 294.86311 * 16 15 13 45 45 H 1.09000 * 109.69781 * 174.50271 * 16 15 13 46 46 H 0.96998 * 120.00031 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.59508 * 293.82222 * 26 17 16 48 48 H 1.09008 * 109.70358 * 173.46845 * 26 17 16 49 49 H 1.09011 * 109.47109 * 60.00016 * 28 27 13 50 50 H 1.09002 * 109.47431 * 180.02562 * 28 27 13 51 51 H 1.08998 * 109.47636 * 300.00265 * 28 27 13 52 52 H 1.08994 * 109.47224 * 59.99768 * 29 27 13 53 53 H 1.09001 * 109.46749 * 180.02562 * 29 27 13 54 54 H 1.08999 * 109.46657 * 299.99232 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7631 2.0345 1.2937 5 6 2.3410 3.4520 1.2704 6 8 1.7693 4.1766 0.1779 7 6 2.0005 3.5724 -1.0975 8 6 1.4193 2.1561 -1.0982 9 1 0.3392 2.2059 -0.9600 10 6 1.7280 1.4851 -2.4118 11 8 2.7406 0.8288 -2.5343 12 7 0.8789 1.6143 -3.4505 13 6 1.1788 0.9616 -4.7273 14 1 1.6744 0.0089 -4.5405 15 6 2.0988 1.8610 -5.5561 16 6 2.4383 1.1602 -6.8753 17 7 1.1865 0.7919 -7.5507 18 6 0.9523 1.1763 -8.8439 19 1 1.3870 2.0893 -9.2231 20 6 0.1559 0.3925 -9.6676 21 7 -0.1385 -0.8417 -9.3176 22 14 -0.4979 1.0893 -11.2727 23 1 0.6402 1.4818 -12.1420 24 1 -1.3162 0.0598 -11.9624 25 1 -1.3382 2.2806 -10.9892 26 6 0.1907 0.0037 -6.8119 27 6 -0.1234 0.7173 -5.4932 28 6 -1.0559 -0.1548 -4.6502 29 6 -0.8023 2.0567 -5.7866 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 2.2381 1.4608 2.0895 36 1 0.6886 2.0824 1.4702 37 1 2.1034 3.9574 2.2065 38 1 3.4229 3.4020 1.1476 39 1 3.0726 3.5259 -1.2892 40 1 1.5166 4.1649 -1.8741 41 1 0.0692 2.1395 -3.3526 42 1 1.5939 2.8043 -5.7644 43 1 3.0162 2.0539 -5.0001 44 1 3.0221 0.2623 -6.6726 45 1 3.0125 1.8334 -7.5118 46 1 -0.6947 -1.3895 -9.8933 47 1 0.5911 -0.9886 -6.6041 48 1 -0.7198 -0.0865 -7.4045 49 1 -1.2768 0.3521 -3.7107 50 1 -1.9830 -0.3289 -5.1963 51 1 -0.5720 -1.1093 -4.4429 52 1 -0.1378 2.6767 -6.3884 53 1 -1.7299 1.8822 -6.3317 54 1 -1.0230 2.5653 -4.8481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940852636.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:33 Heat of formation + Delta-G solvation = -70.783711 kcal Electronic energy + Delta-G solvation = -32632.607081 eV Core-core repulsion = 28604.294073 eV Total energy + Delta-G solvation = -4028.313009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86152 -40.59652 -39.15108 -37.21005 -36.22935 -34.32274 -33.84709 -32.58187 -31.76709 -30.99550 -28.14385 -27.86110 -27.60268 -26.85400 -25.60722 -23.99445 -23.67615 -22.30013 -21.94062 -20.77744 -19.60748 -18.87018 -18.05745 -17.66679 -17.53999 -16.95321 -16.74734 -16.21991 -15.94347 -15.82188 -15.59183 -15.54679 -15.19056 -14.96733 -14.91682 -14.81565 -14.64533 -14.25714 -13.93549 -13.84010 -13.34775 -13.22915 -13.03352 -12.90693 -12.87032 -12.76582 -12.69894 -12.63084 -12.59592 -12.44304 -12.32029 -11.93744 -11.83435 -11.73271 -11.67732 -11.57144 -11.31476 -11.17698 -10.98305 -10.55214 -10.52286 -9.96674 -9.35214 -8.64244 -7.85195 -5.32767 1.48786 1.49776 1.56126 1.56702 2.01904 2.52300 2.68424 2.95130 3.30468 3.62088 3.70215 3.72263 3.78685 3.87182 3.93168 4.00327 4.08858 4.12457 4.22404 4.30036 4.32815 4.35706 4.45642 4.46000 4.58738 4.60555 4.66376 4.66981 4.78210 4.80262 4.86359 4.91003 4.94487 4.96469 4.98751 5.01197 5.04356 5.10369 5.22408 5.25840 5.32034 5.34878 5.43997 5.56898 5.62429 5.71315 5.75672 5.79395 5.95810 6.04991 6.41617 6.60175 7.17162 7.27977 7.86063 8.39861 9.21078 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023195 B = 0.002885 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.854435 B = 9704.658784 C =10075.915809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 N -0.531 5.531 4 C 0.018 3.982 5 C 0.055 3.945 6 O -0.387 6.387 7 C 0.078 3.922 8 C 0.038 3.962 9 H 0.088 0.912 10 C 0.521 3.479 11 O -0.561 6.561 12 N -0.706 5.706 13 C 0.179 3.821 14 H 0.051 0.949 15 C -0.127 4.127 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.258 4.258 19 H 0.066 0.934 20 C -0.046 4.046 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.275 1.275 26 C 0.198 3.802 27 C -0.087 4.087 28 C -0.127 4.127 29 C -0.120 4.120 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.118 0.882 41 H 0.409 0.591 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.001 0.999 45 H 0.057 0.943 46 H 0.249 0.751 47 H -0.017 1.017 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.039 0.961 52 H 0.052 0.948 53 H 0.043 0.957 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 8.307 23.554 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.082 4.082 3 N -0.256 5.256 4 C -0.109 4.109 5 C -0.021 4.021 6 O -0.306 6.306 7 C 0.000 4.000 8 C -0.074 4.074 9 H 0.106 0.894 10 C 0.306 3.694 11 O -0.438 6.438 12 N -0.358 5.358 13 C 0.074 3.926 14 H 0.069 0.931 15 C -0.167 4.167 16 C 0.018 3.982 17 N -0.325 5.325 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.201 1.201 26 C 0.071 3.929 27 C -0.089 4.089 28 C -0.185 4.185 29 C -0.177 4.177 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.247 0.753 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.019 0.981 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.001 0.999 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.071 0.929 53 H 0.062 0.938 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.887 7.891 23.324 24.639 hybrid contribution -1.086 -0.553 -1.318 1.795 sum -1.974 7.338 22.006 23.281 Atomic orbital electron populations 1.22381 0.96716 1.03254 1.02128 1.22216 0.93900 0.88992 1.03055 1.62186 1.58452 1.02331 1.02671 1.22944 1.00748 0.96225 0.90989 1.22937 0.97694 0.90914 0.90574 1.88004 1.77765 1.49771 1.15015 1.22540 1.00498 0.90007 0.86909 1.22285 0.99998 0.95409 0.89714 0.89404 1.20564 0.83000 0.80425 0.85362 1.90704 1.27664 1.41529 1.83906 1.46120 1.25521 1.52975 1.11229 1.20553 0.95209 0.94828 0.81993 0.93116 1.22240 0.98990 0.99528 0.95958 1.20959 0.88294 0.96078 0.92890 1.44230 1.14688 1.63025 1.10552 1.19420 1.28478 1.02642 0.88245 0.91632 1.25796 1.02692 0.94990 1.00715 1.70159 1.41086 1.07542 1.39362 0.85385 0.78145 0.77278 0.79878 1.20473 1.22262 1.20055 1.20573 0.93112 0.89846 0.89353 1.21338 0.94041 0.97617 0.95916 1.21702 0.98633 0.98719 0.99416 1.21664 0.99664 0.95451 1.00922 0.91072 0.93084 0.91283 0.92565 0.89109 0.87627 0.92698 0.85595 0.92543 0.92943 0.86368 0.75296 0.90628 0.92401 0.98073 0.92440 0.94157 0.99906 0.91925 0.90741 0.92634 0.94169 0.92948 0.93808 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 9.13 71.98 0.66 -2.31 16 2 C 0.05 0.92 5.59 86.30 0.48 1.40 16 3 N -0.53 -10.73 4.48 -874.40 -3.92 -14.65 16 4 C 0.02 0.25 5.39 86.32 0.47 0.72 16 5 C 0.06 0.76 7.01 72.02 0.50 1.27 16 6 O -0.39 -7.12 10.83 -148.98 -1.61 -8.73 16 7 C 0.08 1.50 6.28 72.02 0.45 1.95 16 8 C 0.04 0.77 1.79 44.18 0.08 0.85 16 9 H 0.09 1.48 6.36 -2.39 -0.02 1.47 16 10 C 0.52 13.94 5.78 87.66 0.51 14.45 16 11 O -0.56 -20.24 15.06 -3.05 -0.05 -20.28 16 12 N -0.71 -17.57 4.29 -442.39 -1.90 -19.46 16 13 C 0.18 5.92 1.57 45.02 0.07 5.99 16 14 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 15 C -0.13 -4.45 5.31 30.68 0.16 -4.29 16 16 C 0.14 6.22 6.52 86.36 0.56 6.78 16 17 N -0.60 -29.77 2.42 -699.08 -1.70 -31.46 16 18 C -0.26 -13.88 9.58 84.03 0.81 -13.08 16 19 H 0.07 3.45 7.87 -2.91 -0.02 3.42 16 20 C -0.05 -2.56 4.97 84.86 0.42 -2.13 16 21 N -0.94 -54.80 11.15 21.65 0.24 -54.56 16 22 Si 0.96 44.26 29.58 68.60 2.03 46.29 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C 0.20 9.28 3.96 86.36 0.34 9.62 16 27 C -0.09 -2.98 0.56 -52.10 -0.03 -3.01 16 28 C -0.13 -3.70 8.31 71.98 0.60 -3.10 16 29 C -0.12 -3.69 7.83 71.98 0.56 -3.13 16 30 H 0.07 0.91 6.76 -2.39 -0.02 0.90 16 31 H 0.05 0.87 6.18 -2.39 -0.01 0.86 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.52 6.46 -2.39 -0.02 1.51 16 34 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 35 H 0.11 1.12 8.08 -2.39 -0.02 1.10 16 36 H 0.05 0.68 6.75 -2.39 -0.02 0.66 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.41 7.82 6.66 -92.70 -0.62 7.20 16 42 H 0.08 2.49 6.33 -2.39 -0.02 2.48 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 46 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 47 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.06 3.32 6.09 -2.38 -0.01 3.30 16 49 H 0.07 1.68 7.36 -2.38 -0.02 1.66 16 50 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.05 1.83 5.97 -2.39 -0.01 1.82 16 53 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 54 H 0.07 1.59 6.58 -2.39 -0.02 1.57 16 Total: -1.00 -68.59 397.56 0.01 -68.58 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.27 Total: 22.31 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.64 Total: 11.97 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -7.27 Total: -120.14 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -1.66 Total: -29.02 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.59 0.01 -68.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940852636.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.199 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds