Wall clock time and date at job start Tue Mar 31 2020 23:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46890 * 109.46993 * 2 1 4 4 C 1.47016 * 111.00239 * 293.94817 * 3 2 1 5 5 C 1.53095 * 109.26218 * 182.39479 * 4 3 2 6 6 O 1.43020 * 109.29124 * 303.13039 * 5 4 3 7 7 C 1.43091 * 113.68830 * 58.65137 * 6 5 4 8 8 H 1.09004 * 109.50256 * 61.29445 * 7 6 5 9 9 C 1.50704 * 109.52898 * 181.39348 * 7 6 5 10 10 O 1.21280 * 119.99781 * 4.82465 * 9 7 6 11 11 N 1.34781 * 119.99938 * 184.82379 * 9 7 6 12 12 C 1.45329 * 120.36579 * 359.97438 * 11 9 7 13 13 C 1.53438 * 108.41342 * 136.65839 * 12 11 9 14 14 C 1.52877 * 109.38978 * 282.28178 * 13 12 11 15 15 C 1.53947 * 109.72898 * 72.89310 * 14 13 12 16 16 C 1.52445 * 110.73328 * 44.36975 * 15 14 13 17 17 C 1.53803 * 109.40304 * 246.26808 * 16 15 14 18 18 H 1.09001 * 109.51995 * 317.93280 * 17 16 15 19 19 N 1.46493 * 109.52076 * 197.80034 * 17 16 15 20 20 C 1.36946 * 119.99734 * 155.00279 * 19 17 16 21 21 H 1.08001 * 119.99512 * 359.97438 * 20 19 17 22 22 C 1.38811 * 120.00133 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00218 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47048 * 89.99805 * 24 22 20 26 26 H 1.48496 * 109.47519 * 210.00010 * 24 22 20 27 27 H 1.48502 * 109.47097 * 330.00277 * 24 22 20 28 28 C 1.46966 * 120.36347 * 179.72510 * 11 9 7 29 29 C 1.47013 * 111.00431 * 57.58837 * 3 2 1 30 30 H 1.08992 * 109.47045 * 300.00169 * 1 2 3 31 31 H 1.09000 * 109.46727 * 60.00705 * 1 2 3 32 32 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46885 * 239.99556 * 2 1 3 34 34 H 1.09000 * 109.46721 * 119.99852 * 2 1 3 35 35 H 1.09008 * 109.50469 * 62.46058 * 4 3 2 36 36 H 1.09003 * 109.50515 * 302.33528 * 4 3 2 37 37 H 1.09002 * 109.50646 * 63.08857 * 5 4 3 38 38 H 1.09003 * 109.50955 * 183.17410 * 5 4 3 39 39 H 1.09002 * 109.67618 * 256.39369 * 12 11 9 40 40 H 1.08996 * 109.67754 * 16.89187 * 12 11 9 41 41 H 1.09003 * 109.48632 * 42.25440 * 13 12 11 42 42 H 1.09003 * 109.48761 * 162.28613 * 13 12 11 43 43 H 1.08993 * 109.43114 * 192.97576 * 14 13 12 44 44 H 1.09007 * 109.42351 * 312.86890 * 14 13 12 45 45 H 1.09004 * 109.22127 * 164.69345 * 15 14 13 46 46 H 1.08998 * 109.22758 * 284.08365 * 15 14 13 47 47 H 1.08998 * 109.48152 * 6.24926 * 16 15 14 48 48 H 1.09004 * 109.47966 * 126.29109 * 16 15 14 49 49 H 0.96998 * 120.00486 * 335.00492 * 19 17 16 50 50 H 0.97007 * 119.99739 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.53026 * 51.52091 * 28 11 9 52 52 H 1.08996 * 109.53053 * 171.74627 * 28 11 9 53 53 H 1.09000 * 109.50641 * 297.53969 * 29 3 2 54 54 H 1.08990 * 109.51138 * 57.66963 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0674 -1.2543 5 6 2.2494 3.4844 -1.2368 6 8 1.7596 4.1809 -0.0877 7 6 2.0827 3.5434 1.1520 8 1 3.1659 3.4930 1.2637 9 6 1.4954 4.3336 2.2929 10 8 0.7894 5.2932 2.0658 11 7 1.7547 3.9738 3.5657 12 6 2.5992 2.8250 3.8469 13 6 3.5611 3.1970 4.9829 14 6 4.6943 4.0592 4.4266 15 6 4.1648 5.4682 4.1035 16 6 3.2783 5.9833 5.2316 17 6 1.8325 6.1179 4.7245 18 1 1.8364 6.5476 3.7227 19 7 1.0759 6.9884 5.6278 20 6 -0.0200 7.6673 5.1660 21 1 -0.3263 7.5613 4.1357 22 6 -0.7367 8.4925 6.0217 23 7 -0.3631 8.6220 7.2771 24 14 -2.2312 9.4192 5.3916 25 1 -3.4459 8.5858 5.5796 26 1 -2.3807 10.6893 6.1464 27 1 -2.0552 9.7191 3.9479 28 6 1.1910 4.7423 4.6845 29 6 1.5018 2.1269 1.1586 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5855 2.1188 -1.3507 36 1 2.0852 1.5148 -2.0973 37 1 3.3373 3.4323 -1.1945 38 1 1.9451 4.0133 -2.1400 39 1 1.9807 1.9806 4.1513 40 1 3.1679 2.5606 2.9555 41 1 3.0216 3.7553 5.7481 42 1 3.9759 2.2888 5.4203 43 1 5.4912 4.1322 5.1665 44 1 5.0847 3.6021 3.5172 45 1 5.0076 6.1466 3.9709 46 1 3.5855 5.4311 3.1809 47 1 3.3072 5.2823 6.0657 48 1 3.6397 6.9571 5.5621 49 1 1.3512 7.0839 6.5530 50 1 -0.8641 9.1985 7.8752 51 1 0.1154 4.8523 4.5457 52 1 1.3872 4.2199 5.6208 53 1 0.4145 2.1793 1.1009 54 1 1.7940 1.6180 2.0771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088429732.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:53 Heat of formation + Delta-G solvation = -67.578618 kcal Electronic energy + Delta-G solvation = -32725.310042 eV Core-core repulsion = 28697.136017 eV Total energy + Delta-G solvation = -4028.174025 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.99168 -40.44128 -38.70452 -37.26414 -36.73259 -35.18880 -33.98361 -32.60642 -31.67985 -31.29901 -29.16591 -27.84133 -27.13623 -26.06451 -25.39508 -24.04489 -23.60570 -22.36578 -21.11925 -20.88607 -20.03851 -19.12061 -18.42272 -17.83766 -17.41929 -17.05501 -16.67968 -16.42640 -16.18991 -16.00022 -15.88472 -15.45811 -15.40934 -15.13126 -14.98215 -14.72118 -14.45843 -14.26176 -14.04087 -13.83681 -13.54820 -13.38470 -13.14235 -13.10681 -12.88436 -12.82269 -12.79529 -12.56999 -12.38094 -12.24029 -12.08123 -11.94938 -11.89523 -11.73784 -11.58266 -11.42968 -11.40108 -11.27336 -11.02512 -10.77115 -10.57000 -9.64411 -9.45016 -8.95400 -7.98443 -5.25916 1.40147 1.41349 1.51469 1.54043 1.73861 2.52479 2.70431 2.92273 3.34083 3.50960 3.65307 3.71790 3.85665 3.93762 3.95735 4.02213 4.08505 4.10897 4.18831 4.20524 4.26508 4.29896 4.38079 4.41346 4.46968 4.48327 4.56171 4.61980 4.68847 4.74920 4.77146 4.80595 4.86571 4.87500 4.95208 4.96570 5.00864 5.06187 5.17173 5.26550 5.28459 5.33018 5.43785 5.46157 5.51337 5.57443 5.71447 5.80958 5.94457 6.02762 6.26098 6.49590 7.20795 7.31878 8.05012 8.32059 9.24228 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012437 B = 0.003576 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.801846 B = 7829.191170 C = 8967.608712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 N -0.529 5.529 4 C 0.014 3.986 5 C 0.055 3.945 6 O -0.395 6.395 7 C 0.088 3.912 8 H 0.110 0.890 9 C 0.506 3.494 10 O -0.572 6.572 11 N -0.589 5.589 12 C 0.093 3.907 13 C -0.148 4.148 14 C -0.107 4.107 15 C -0.114 4.114 16 C -0.119 4.119 17 C 0.164 3.836 18 H 0.022 0.978 19 N -0.729 5.729 20 C -0.234 4.234 21 H 0.053 0.947 22 C -0.067 4.067 23 N -0.963 5.963 24 Si 0.964 3.036 25 H -0.285 1.285 26 H -0.285 1.285 27 H -0.283 1.283 28 C 0.117 3.883 29 C 0.029 3.971 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.039 0.961 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.377 0.623 50 H 0.253 0.747 51 H 0.028 0.972 52 H 0.101 0.899 53 H 0.030 0.970 54 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.035 -24.772 -13.805 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.114 4.114 5 C -0.022 4.022 6 O -0.314 6.314 7 C 0.027 3.973 8 H 0.128 0.872 9 C 0.293 3.707 10 O -0.450 6.450 11 N -0.323 5.323 12 C -0.029 4.029 13 C -0.185 4.185 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.157 4.157 17 C 0.054 3.946 18 H 0.040 0.960 19 N -0.370 5.370 20 C -0.367 4.367 21 H 0.071 0.929 22 C -0.259 4.259 23 N -0.614 5.614 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.211 1.211 27 H -0.209 1.209 28 C -0.008 4.008 29 C -0.099 4.099 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.210 0.790 50 H 0.062 0.938 51 H 0.047 0.953 52 H 0.119 0.881 53 H 0.049 0.951 54 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.956 -24.042 -14.029 30.703 hybrid contribution -2.159 1.193 0.058 2.468 sum 10.797 -22.850 -13.971 28.876 Atomic orbital electron populations 1.22439 0.98623 1.03042 1.01190 1.22304 0.92518 0.88031 1.04738 1.62544 1.58308 1.03051 1.01383 1.22889 0.99133 0.95614 0.93782 1.23006 0.99470 0.91842 0.87842 1.88145 1.79010 1.50194 1.14059 1.21930 1.00390 0.91244 0.83759 0.87232 1.20735 0.80859 0.84563 0.84511 1.90768 1.39382 1.30153 1.84743 1.47814 1.49785 1.30592 1.04134 1.22193 0.92800 0.87038 1.00846 1.22331 0.96720 1.01632 0.97820 1.21724 0.97658 0.93066 1.01970 1.21629 0.98114 0.98320 0.97156 1.21988 0.93419 1.00796 0.99461 1.20711 0.91272 0.89687 0.92897 0.95967 1.42469 1.31765 1.52258 1.10461 1.19416 1.03681 1.18977 0.94582 0.92856 1.25387 1.02429 1.01985 0.96147 1.69782 1.42930 1.43759 1.04903 0.85291 0.80106 0.78141 0.77177 1.21178 1.21127 1.20881 1.21972 0.96581 0.93161 0.89048 1.22779 0.97642 0.92342 0.97172 0.93870 0.93345 0.90430 0.88564 0.88830 0.94755 0.86642 0.90689 0.87007 0.89474 0.87713 0.91224 0.87459 0.90551 0.90163 0.92343 0.94232 0.89648 0.93878 0.79041 0.93835 0.95321 0.88116 0.95128 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.50 9.20 71.98 0.66 -1.83 16 2 C 0.05 0.53 6.10 86.31 0.53 1.06 16 3 N -0.53 -7.80 4.94 -895.22 -4.42 -12.22 16 4 C 0.01 0.21 5.33 86.31 0.46 0.67 16 5 C 0.05 1.02 7.01 72.01 0.50 1.53 16 6 O -0.40 -11.90 10.02 -130.04 -1.30 -13.20 16 7 C 0.09 2.26 2.38 29.88 0.07 2.33 16 8 H 0.11 2.28 7.25 -2.38 -0.02 2.26 16 9 C 0.51 17.72 5.58 87.66 0.49 18.21 16 10 O -0.57 -27.93 15.26 15.91 0.24 -27.68 16 11 N -0.59 -17.21 1.69 -824.88 -1.40 -18.61 16 12 C 0.09 1.58 4.43 86.75 0.38 1.96 16 13 C -0.15 -2.33 5.45 30.70 0.17 -2.16 16 14 C -0.11 -1.81 5.75 30.87 0.18 -1.63 16 15 C -0.11 -3.05 5.40 30.73 0.17 -2.88 16 16 C -0.12 -4.01 4.97 30.68 0.15 -3.86 16 17 C 0.16 7.18 2.38 44.88 0.11 7.29 16 18 H 0.02 1.16 6.13 -2.39 -0.01 1.15 16 19 N -0.73 -39.63 5.12 -323.47 -1.66 -41.29 16 20 C -0.23 -14.47 9.90 84.03 0.83 -13.64 16 21 H 0.05 3.46 7.83 -2.91 -0.02 3.44 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.96 -60.90 13.06 21.65 0.28 -60.62 16 24 Si 0.96 50.29 29.55 68.60 2.03 52.31 16 25 H -0.28 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 27 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 28 C 0.12 4.43 4.72 85.91 0.41 4.83 16 29 C 0.03 0.57 4.03 86.32 0.35 0.91 16 30 H 0.04 0.71 6.42 -2.39 -0.02 0.69 16 31 H 0.05 0.71 6.61 -2.39 -0.02 0.69 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.71 8.11 -2.39 -0.02 0.69 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.03 0.63 6.59 -2.38 -0.02 0.61 16 36 H 0.12 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 1.14 7.86 -2.39 -0.02 1.12 16 40 H 0.10 1.35 4.86 -2.39 -0.01 1.34 16 41 H 0.07 1.44 3.35 -2.39 -0.01 1.43 16 42 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.06 7.87 -2.38 -0.02 1.04 16 45 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.04 1.23 5.37 -2.39 -0.01 1.22 16 47 H 0.09 2.50 5.47 -2.39 -0.01 2.49 16 48 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 49 H 0.38 21.09 7.80 -92.71 -0.72 20.37 16 50 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 51 H 0.03 1.34 8.05 -2.38 -0.02 1.32 16 52 H 0.10 3.25 6.06 -2.39 -0.01 3.23 16 53 H 0.03 0.75 6.41 -2.39 -0.02 0.74 16 54 H 0.12 1.71 5.44 -2.39 -0.01 1.70 16 Total: -1.00 -82.81 388.14 -0.12 -82.93 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.19 Total: 29.26 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.92 Total: 9.13 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -7.19 Total: -132.74 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.06 Total: -40.89 kcal Atomic # 14 Polarization: 50.29 SS G_CDS: 2.03 Total: 52.31 kcal Total: -82.81 -0.12 -82.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088429732.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.348 kcal (2) G-P(sol) polarization free energy of solvation -82.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds