Wall clock time and date at job start Tue Mar 31 2020 23:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47115 * 2 1 4 4 C 1.46847 * 111.00271 * 310.06246 * 3 2 1 5 5 C 1.53033 * 109.52351 * 174.16325 * 4 3 2 6 6 C 1.53201 * 109.30212 * 59.17412 * 5 4 3 7 7 C 1.53123 * 109.11487 * 302.37064 * 6 5 4 8 8 C 1.46849 * 111.00069 * 185.84387 * 3 2 1 9 9 H 1.08999 * 109.45739 * 65.82712 * 8 3 2 10 10 C 1.50700 * 109.46311 * 305.86087 * 8 3 2 11 11 O 1.21278 * 119.99686 * 324.94942 * 10 8 3 12 12 N 1.34779 * 119.99849 * 144.94821 * 10 8 3 13 13 C 1.46497 * 119.99798 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47107 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.51413 * 59.99738 * 14 13 12 16 16 C 1.53294 * 109.51316 * 180.10159 * 14 13 12 17 17 N 1.47165 * 108.37951 * 172.17370 * 16 14 13 18 18 C 1.36933 * 120.94385 * 129.51903 * 17 16 14 19 19 H 1.08001 * 120.00000 * 208.75278 * 18 17 16 20 20 C 1.38810 * 119.99985 * 28.76130 * 18 17 16 21 21 N 1.31617 * 120.00293 * 15.62270 * 20 18 17 22 22 Si 1.86802 * 119.99933 * 195.62485 * 20 18 17 23 23 H 1.48506 * 109.47111 * 94.96283 * 22 20 18 24 24 H 1.48494 * 109.47277 * 214.95986 * 22 20 18 25 25 H 1.48500 * 109.47259 * 334.96338 * 22 20 18 26 26 C 1.47152 * 118.07065 * 309.54904 * 17 16 14 27 27 C 1.53295 * 108.38868 * 50.49891 * 26 17 16 28 28 O 1.42958 * 109.21996 * 307.69881 * 27 26 17 29 29 H 1.09007 * 109.46984 * 299.99756 * 1 2 3 30 30 H 1.09001 * 109.47327 * 59.99578 * 1 2 3 31 31 H 1.08995 * 109.47446 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46781 * 240.00243 * 2 1 3 33 33 H 1.09001 * 109.47327 * 120.00422 * 2 1 3 34 34 H 1.09006 * 109.45700 * 294.17306 * 4 3 2 35 35 H 1.08996 * 109.46502 * 54.13854 * 4 3 2 36 36 H 1.09000 * 109.50213 * 179.11678 * 5 4 3 37 37 H 1.09006 * 109.50259 * 299.22833 * 5 4 3 38 38 H 1.09005 * 109.57560 * 182.46191 * 6 5 4 39 39 H 1.08991 * 109.51412 * 62.24637 * 6 5 4 40 40 H 1.09000 * 109.50304 * 297.67754 * 7 6 5 41 41 H 1.09001 * 109.50130 * 177.60258 * 7 6 5 42 42 H 0.96996 * 120.00118 * 359.97438 * 12 10 8 43 43 H 1.09000 * 109.47023 * 300.00183 * 13 12 10 44 44 H 1.09000 * 109.47428 * 59.99831 * 13 12 10 45 45 H 1.09002 * 109.47161 * 59.99921 * 15 14 13 46 46 H 1.09001 * 109.47152 * 179.97438 * 15 14 13 47 47 H 1.09001 * 109.47176 * 300.00195 * 15 14 13 48 48 H 1.09006 * 109.68235 * 291.94730 * 16 14 13 49 49 H 1.09000 * 109.68423 * 52.50101 * 16 14 13 50 50 H 0.96997 * 120.00713 * 180.02562 * 21 20 18 51 51 H 1.08993 * 109.68250 * 290.77040 * 26 17 16 52 52 H 1.09004 * 109.67896 * 170.22212 * 26 17 16 53 53 H 1.09003 * 109.51133 * 187.77100 * 27 26 17 54 54 H 1.08997 * 109.51042 * 67.62008 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3632 2.1753 -1.0492 5 6 1.7874 3.6406 -0.9266 6 6 3.3100 3.7403 -1.0637 7 6 3.9681 2.8695 0.0102 8 6 3.4809 1.4266 -0.1396 9 1 3.7627 1.0482 -1.1222 10 6 4.1119 0.5702 0.9279 11 8 3.6072 0.5035 2.0286 12 7 5.2369 -0.1216 0.6592 13 6 5.8506 -0.9537 1.6970 14 6 7.1061 -1.6249 1.1365 15 6 8.1016 -0.5531 0.6880 16 6 7.7477 -2.4979 2.2210 17 7 8.8365 -3.2748 1.6074 18 6 10.0866 -3.2976 2.1658 19 1 10.9547 -3.4452 1.5405 20 6 10.2380 -3.1312 3.5356 21 7 9.1986 -3.2587 4.3329 22 14 11.9170 -2.7262 4.2473 23 1 12.0432 -1.2557 4.4118 24 1 12.0669 -3.3867 5.5687 25 1 12.9755 -3.2140 3.3271 26 6 8.5429 -4.0256 0.3763 27 6 7.8633 -3.0773 -0.6180 28 8 6.7515 -2.4443 0.0200 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6550 1.7935 -2.0276 35 1 0.2816 2.0997 -0.9378 36 1 1.3122 4.2242 -1.7152 37 1 1.4836 4.0272 0.0463 38 1 3.6213 4.7767 -0.9335 39 1 3.6103 3.3901 -2.0512 40 1 3.6987 3.2439 0.9978 41 1 5.0512 2.9021 -0.1083 42 1 5.6403 -0.0686 -0.2214 43 1 6.1218 -0.3305 2.5492 44 1 5.1418 -1.7176 2.0166 45 1 8.3729 0.0702 1.5401 46 1 8.9959 -1.0319 0.2892 47 1 7.6454 0.0661 -0.0844 48 1 8.1484 -1.8646 3.0126 49 1 7.0018 -3.1763 2.6351 50 1 9.3043 -3.1421 5.2900 51 1 7.8768 -4.8577 0.6039 52 1 9.4706 -4.4041 -0.0528 53 1 7.5136 -3.6441 -1.4809 54 1 8.5759 -2.3195 -0.9436 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108420865.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:12 Heat of formation + Delta-G solvation = -75.996112 kcal Electronic energy + Delta-G solvation = -31785.858453 eV Core-core repulsion = 27757.319417 eV Total energy + Delta-G solvation = -4028.539035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55036 -40.62184 -39.06566 -36.53276 -35.92591 -35.29393 -33.39135 -33.21998 -32.10781 -30.56291 -29.59487 -28.12101 -27.50195 -25.68465 -25.03325 -24.72161 -22.89611 -22.28806 -21.54140 -20.69333 -20.25827 -18.96059 -18.46819 -17.57418 -17.16860 -16.93026 -16.46477 -16.27409 -16.00916 -15.82968 -15.65612 -15.50343 -15.36722 -15.19118 -14.75585 -14.60844 -14.47729 -14.39471 -14.18359 -13.86783 -13.64266 -13.36692 -13.17746 -12.93852 -12.80468 -12.69613 -12.64604 -12.54218 -12.47121 -12.33286 -12.13632 -12.10500 -11.97591 -11.87047 -11.78109 -11.57750 -11.18681 -11.15539 -10.80131 -10.61218 -10.52204 -10.12313 -9.27236 -8.70536 -7.90787 -5.40552 1.45287 1.46580 1.55799 1.57380 2.03079 2.46924 2.76314 2.89552 3.24169 3.48932 3.63195 3.83626 3.91050 3.95939 4.00131 4.04842 4.09794 4.14561 4.20161 4.30738 4.37638 4.41231 4.45483 4.53738 4.55485 4.58765 4.63106 4.70035 4.70849 4.77677 4.80258 4.91707 4.95702 4.98488 5.03108 5.08751 5.10920 5.12010 5.19136 5.19574 5.22986 5.31728 5.34145 5.36800 5.48552 5.51215 5.60787 5.95997 6.14731 6.29302 6.35586 6.57068 7.06033 7.24773 7.74525 8.29896 9.14827 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.002637 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.318542 B =10613.631987 C =10887.337051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.534 5.534 4 C 0.049 3.951 5 C -0.117 4.117 6 C -0.114 4.114 7 C -0.105 4.105 8 C 0.080 3.920 9 H 0.076 0.924 10 C 0.511 3.489 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.152 3.848 14 C 0.095 3.905 15 C -0.152 4.152 16 C 0.171 3.829 17 N -0.606 5.606 18 C -0.260 4.260 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.298 1.298 25 H -0.265 1.265 26 C 0.102 3.898 27 C 0.053 3.947 28 O -0.385 6.385 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.413 0.587 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.062 0.938 49 H -0.010 1.010 50 H 0.250 0.750 51 H 0.011 0.989 52 H 0.072 0.928 53 H 0.118 0.882 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.086 13.302 -17.509 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.260 5.260 4 C -0.077 4.077 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.144 4.144 8 C -0.032 4.032 9 H 0.094 0.906 10 C 0.298 3.702 11 O -0.448 6.448 12 N -0.358 5.358 13 C 0.027 3.973 14 C 0.054 3.946 15 C -0.209 4.209 16 C 0.044 3.956 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.225 1.225 25 H -0.189 1.189 26 C -0.024 4.024 27 C -0.024 4.024 28 O -0.305 6.305 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.009 0.991 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.091 0.909 53 H 0.135 0.865 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.726 13.411 -16.178 25.099 hybrid contribution 1.571 -0.936 0.429 1.878 sum -12.155 12.475 -15.749 23.482 Atomic orbital electron populations 1.21829 0.93022 1.02515 1.02731 1.22126 0.97552 0.88760 0.99845 1.61738 1.02875 1.12345 1.49077 1.22349 0.99987 0.93769 0.91641 1.21650 0.95998 0.95103 1.02748 1.21586 0.95270 1.00097 0.98156 1.21558 1.00730 0.91286 1.00805 1.21603 0.89288 0.96783 0.95525 0.90644 1.21069 0.80064 0.79559 0.89508 1.90686 1.63157 1.65032 1.25877 1.45870 1.26963 1.46760 1.16255 1.20984 0.92820 0.92937 0.90590 1.22169 0.93399 0.90898 0.88147 1.22102 0.99328 0.97731 1.01773 1.20993 0.88857 0.92559 0.93192 1.44226 1.08176 1.53237 1.27426 1.19497 0.84696 1.44699 0.90102 0.90910 1.25874 1.00412 1.01432 0.96710 1.70179 1.31257 1.53705 1.03046 0.85255 0.80146 0.77699 0.77386 1.21115 1.22521 1.18908 1.21824 0.98745 0.93675 0.88120 1.23113 0.89032 0.95555 0.94740 1.87820 1.33264 1.64238 1.45159 0.92605 0.90554 0.91528 0.94686 0.93233 0.93855 0.88928 0.89139 0.92197 0.90077 0.90621 0.92429 0.90001 0.75013 0.91205 0.93187 0.92655 0.91923 0.90303 0.91973 0.99145 0.94074 0.97145 0.90930 0.86454 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.34 71.98 0.67 -1.87 16 2 C 0.04 1.03 5.32 86.30 0.46 1.49 16 3 N -0.53 -11.76 4.40 -875.53 -3.85 -15.61 16 4 C 0.05 0.74 4.98 86.32 0.43 1.17 16 5 C -0.12 -1.48 6.09 30.67 0.19 -1.29 16 6 C -0.11 -1.40 6.01 30.70 0.18 -1.22 16 7 C -0.11 -1.92 5.35 30.64 0.16 -1.76 16 8 C 0.08 1.73 2.22 44.19 0.10 1.82 16 9 H 0.08 1.33 8.11 -2.39 -0.02 1.31 16 10 C 0.51 15.19 5.80 87.66 0.51 15.70 16 11 O -0.57 -22.23 15.60 -3.02 -0.05 -22.28 16 12 N -0.71 -19.80 5.15 -463.07 -2.39 -22.18 16 13 C 0.15 5.36 4.82 86.38 0.42 5.78 16 14 C 0.10 3.49 0.76 -10.70 -0.01 3.48 16 15 C -0.15 -4.87 7.92 71.98 0.57 -4.30 16 16 C 0.17 8.25 4.08 86.35 0.35 8.61 16 17 N -0.61 -29.76 2.56 -697.52 -1.79 -31.54 16 18 C -0.26 -13.85 9.63 84.03 0.81 -13.04 16 19 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 20 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 21 N -0.94 -55.53 11.25 21.65 0.24 -55.29 16 22 Si 0.97 44.19 29.58 68.60 2.03 46.22 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 26 C 0.10 4.07 6.74 86.35 0.58 4.66 16 27 C 0.05 1.66 6.60 72.08 0.48 2.13 16 28 O -0.39 -13.39 9.98 -148.98 -1.49 -14.87 16 29 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.08 1.02 6.19 -2.39 -0.01 1.00 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.05 1.51 6.41 -2.39 -0.02 1.50 16 34 H 0.04 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.09 1.23 5.82 -2.39 -0.01 1.22 16 36 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.41 9.42 7.17 -92.71 -0.67 8.75 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.06 2.17 6.12 -2.39 -0.01 2.16 16 47 H 0.08 1.94 6.87 -2.39 -0.02 1.92 16 48 H 0.06 3.36 6.30 -2.38 -0.02 3.35 16 49 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 50 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 51 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 53 H 0.12 2.85 8.14 -2.39 -0.02 2.84 16 54 H 0.06 1.82 6.25 -2.39 -0.01 1.80 16 Total: -1.00 -70.27 404.07 -0.75 -71.02 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.21 Total: 25.43 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.32 Total: 19.11 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -7.78 Total: -124.63 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.53 Total: -37.15 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.27 -0.75 -71.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108420865.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.976 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds