Wall clock time and date at job start Wed Apr 1 2020 00:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47155 * 2 1 4 4 C 1.36935 * 120.00090 * 275.47465 * 3 2 1 5 5 H 1.07999 * 120.00132 * 39.57313 * 4 3 2 6 6 C 1.38816 * 119.99730 * 219.57763 * 4 3 2 7 7 N 1.31612 * 120.00204 * 14.93886 * 6 4 3 8 8 Si 1.86802 * 119.99862 * 194.94668 * 6 4 3 9 9 H 1.48496 * 109.47351 * 89.99652 * 8 6 4 10 10 H 1.48494 * 109.47020 * 209.99785 * 8 6 4 11 11 H 1.48498 * 109.46938 * 329.99443 * 8 6 4 12 12 C 1.46500 * 120.00069 * 95.47127 * 3 2 1 13 13 C 1.53004 * 109.46953 * 270.00226 * 12 3 2 14 14 C 1.53005 * 109.46916 * 179.97438 * 13 12 3 15 15 N 1.46503 * 109.47137 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99919 * 180.02562 * 15 14 13 17 17 O 1.21271 * 120.00516 * 4.25084 * 16 15 14 18 18 C 1.50705 * 119.99594 * 184.25415 * 16 15 14 19 19 H 1.08994 * 109.47327 * 316.65550 * 18 16 15 20 20 N 1.46497 * 109.46997 * 196.65503 * 18 16 15 21 21 C 1.34776 * 119.99936 * 135.20864 * 20 18 16 22 22 C 1.50703 * 119.99944 * 184.71895 * 21 20 18 23 23 O 1.21281 * 119.99943 * 4.71822 * 21 20 18 24 24 C 1.53006 * 109.46879 * 76.65732 * 18 16 15 25 25 C 1.54269 * 110.02755 * 183.26335 * 24 18 16 26 26 C 1.54889 * 104.19370 * 217.10536 * 25 24 18 27 27 C 1.54892 * 102.74937 * 37.94804 * 26 25 24 28 28 C 1.53871 * 110.03031 * 66.10105 * 24 18 16 29 29 H 1.09000 * 109.47335 * 299.99584 * 1 2 3 30 30 H 1.08999 * 109.47421 * 59.99827 * 1 2 3 31 31 H 1.09000 * 109.47265 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47096 * 239.99920 * 2 1 3 33 33 H 1.08999 * 109.47421 * 120.00172 * 2 1 3 34 34 H 0.97004 * 120.00083 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47329 * 150.00175 * 12 3 2 36 36 H 1.09003 * 109.47452 * 29.99917 * 12 3 2 37 37 H 1.08997 * 109.47519 * 60.00226 * 13 12 3 38 38 H 1.09001 * 109.47192 * 299.99760 * 13 12 3 39 39 H 1.09007 * 109.47012 * 60.00302 * 14 13 12 40 40 H 1.08994 * 109.47200 * 299.99661 * 14 13 12 41 41 H 0.97009 * 119.99694 * 0.02562 * 15 14 13 42 42 H 0.97000 * 120.00040 * 315.49012 * 20 18 16 43 43 H 1.08997 * 109.46986 * 59.99812 * 22 21 20 44 44 H 1.09008 * 109.46964 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46888 * 299.99591 * 22 21 20 46 46 H 1.08994 * 110.01702 * 304.70341 * 24 18 16 47 47 H 1.09000 * 110.48857 * 335.78733 * 25 24 18 48 48 H 1.08998 * 110.48293 * 98.43006 * 25 24 18 49 49 H 1.09004 * 110.75804 * 279.63242 * 26 25 24 50 50 H 1.09007 * 110.91550 * 156.33425 * 26 25 24 51 51 H 1.09005 * 110.48597 * 203.37896 * 27 26 25 52 52 H 1.08988 * 110.59943 * 80.78950 * 27 26 25 53 53 H 1.09003 * 110.03389 * 238.56247 * 28 24 18 54 54 H 1.09000 * 110.03813 * 359.97438 * 28 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1399 2.0644 -1.1805 5 1 1.3881 1.9544 -1.9480 6 6 3.2295 2.8984 -1.3906 7 7 4.2823 2.8162 -0.6051 8 14 3.2014 4.1375 -2.7883 9 1 2.6296 5.4189 -2.3024 10 1 4.5856 4.3661 -3.2750 11 1 2.3668 3.6124 -3.8986 12 6 2.3765 2.0315 1.2629 13 6 1.1474 2.7365 1.8401 14 6 1.5213 3.4151 3.1595 15 7 0.3446 4.0907 3.7119 16 6 0.4375 4.7607 4.8776 17 8 1.5114 4.8698 5.4304 18 6 -0.7932 5.3741 5.4942 19 1 -1.3806 5.8669 4.7196 20 7 -0.3949 6.3572 6.5047 21 6 -1.0033 7.5589 6.5524 22 6 -0.5228 8.6089 7.5208 23 8 -1.9376 7.7952 5.8160 24 6 -1.6341 4.2783 6.1525 25 6 -2.9377 4.8800 6.7169 26 6 -3.1758 4.1016 8.0347 27 6 -1.7422 3.9342 8.5966 28 6 -0.8740 3.6770 7.3476 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.0439 3.3988 -0.7522 35 1 3.1645 2.7631 1.0842 36 1 2.7307 1.2815 1.9702 37 1 0.3594 2.0049 2.0189 38 1 0.7932 3.4865 1.1330 39 1 2.3095 4.1467 2.9811 40 1 1.8752 2.6648 3.8665 41 1 -0.5015 4.0558 3.2386 42 1 0.3096 6.1449 7.1367 43 1 0.5189 8.8494 7.3084 44 1 -1.1322 9.5065 7.4153 45 1 -0.6079 8.2300 8.5392 46 1 -1.8654 3.4989 5.4266 47 1 -2.8106 5.9434 6.9196 48 1 -3.7635 4.7187 6.0240 49 1 -3.6277 3.1303 7.8333 50 1 -3.7948 4.6791 8.7213 51 1 -1.6956 3.0826 9.2755 52 1 -1.4206 4.8435 9.1041 53 1 -0.7372 2.6054 7.2022 54 1 0.0941 4.1654 7.4584 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265122517.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:34 Heat of formation + Delta-G solvation = -100.523935 kcal Electronic energy + Delta-G solvation = -30726.672097 eV Core-core repulsion = 26697.069455 eV Total energy + Delta-G solvation = -4029.602641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.84544 -40.15090 -38.78734 -38.15160 -36.26800 -35.29177 -33.81472 -33.01399 -31.86941 -30.25450 -29.70139 -29.62605 -27.51378 -26.25592 -24.92635 -22.58262 -22.17503 -22.00821 -21.66525 -21.38946 -20.30948 -18.64202 -18.63261 -17.94909 -17.45019 -17.01225 -16.93661 -16.49301 -16.32780 -16.00439 -15.78324 -15.44382 -15.37538 -14.86836 -14.71903 -14.38335 -14.23319 -14.11508 -14.06723 -13.92187 -13.32043 -13.26497 -13.10713 -13.01005 -12.75783 -12.72386 -12.60910 -12.46175 -12.31684 -12.12841 -12.06295 -11.96166 -11.93206 -11.87039 -11.58894 -11.46271 -11.42929 -11.23290 -11.04380 -11.00780 -10.52384 -10.16014 -10.11190 -8.50652 -7.77613 -5.49705 1.42293 1.44603 1.46984 1.54563 1.57120 1.89415 2.43546 2.50632 3.26770 3.45556 3.59053 3.67567 3.69056 3.86245 3.88700 4.15939 4.20483 4.30708 4.32331 4.45609 4.51608 4.53544 4.55566 4.59273 4.64747 4.65406 4.75028 4.77653 4.78619 4.82773 4.89540 4.95550 5.01146 5.05328 5.06791 5.08196 5.17136 5.23850 5.28852 5.32709 5.34321 5.39409 5.40560 5.48306 5.48851 5.60125 5.68997 5.90927 6.44241 6.48340 6.51274 7.09455 7.18106 7.20886 7.89451 8.41328 9.14707 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013217 B = 0.002567 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.959912 B =10906.567437 C =12054.735804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 N -0.602 5.602 4 C -0.260 4.260 5 H 0.054 0.946 6 C -0.037 4.037 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.287 1.287 10 H -0.294 1.294 11 H -0.269 1.269 12 C 0.148 3.852 13 C -0.124 4.124 14 C 0.136 3.864 15 N -0.712 5.712 16 C 0.507 3.493 17 O -0.570 6.570 18 C 0.136 3.864 19 H 0.111 0.889 20 N -0.702 5.702 21 C 0.510 3.490 22 C -0.168 4.168 23 O -0.587 6.587 24 C -0.092 4.092 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.122 4.122 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.046 0.954 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.413 0.587 42 H 0.415 0.585 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.068 0.932 53 H 0.064 0.936 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 4.278 20.983 25.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.324 5.324 4 C -0.391 4.391 5 H 0.072 0.928 6 C -0.234 4.234 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.213 1.213 10 H -0.221 1.221 11 H -0.193 1.193 12 C 0.021 3.979 13 C -0.164 4.164 14 C 0.012 3.988 15 N -0.364 5.364 16 C 0.293 3.707 17 O -0.449 6.449 18 C 0.026 3.974 19 H 0.129 0.871 20 N -0.355 5.355 21 C 0.299 3.701 22 C -0.227 4.227 23 O -0.467 6.467 24 C -0.112 4.112 25 C -0.153 4.153 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.253 0.747 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.132 0.868 46 H 0.111 0.889 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.086 0.914 53 H 0.082 0.918 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.876 4.562 20.818 25.431 hybrid contribution 0.529 0.527 -1.136 1.359 sum -13.346 5.088 19.683 24.319 Atomic orbital electron populations 1.22174 0.97320 1.00777 1.00792 1.20995 0.93774 0.85686 0.98631 1.43969 1.76526 1.09522 1.02375 1.19201 1.02377 1.22328 0.95164 0.92817 1.25935 0.94370 1.03004 1.00088 1.70019 1.05166 1.39995 1.41283 0.85445 0.76526 0.79528 0.80018 1.21342 1.22102 1.19335 1.20767 0.95392 0.96294 0.85430 1.22182 1.00800 0.99465 0.93930 1.21143 0.87331 0.95426 0.94949 1.45992 1.14438 1.53073 1.22885 1.21125 0.90681 0.78034 0.80886 1.90667 1.30657 1.60459 1.63124 1.20789 0.92460 0.91399 0.92728 0.87134 1.45738 1.40657 1.14480 1.34599 1.21543 0.81537 0.82874 0.84124 1.21944 1.04343 0.97013 0.99393 1.90708 1.30135 1.80565 1.45318 1.22129 0.95023 0.95681 0.98328 1.22388 0.95547 0.99875 0.97476 1.22475 0.96904 1.00346 0.96012 1.22308 0.94594 1.01933 0.96560 1.22194 0.98697 1.00635 0.94478 0.92991 0.94630 0.91635 0.95321 0.93599 0.94029 0.91656 0.95453 0.91130 0.93378 0.93932 0.91641 0.75127 0.74731 0.87958 0.88769 0.86753 0.88915 0.91914 0.91421 0.90973 0.91013 0.90949 0.91354 0.91762 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 10.21 71.98 0.73 -4.24 16 2 C 0.13 5.44 6.44 86.38 0.56 5.99 16 3 N -0.60 -29.04 2.43 -702.01 -1.70 -30.74 16 4 C -0.26 -13.94 9.48 84.03 0.80 -13.14 16 5 H 0.05 2.88 7.87 -2.91 -0.02 2.86 16 6 C -0.04 -2.03 5.10 84.86 0.43 -1.60 16 7 N -0.92 -53.39 11.21 21.65 0.24 -53.15 16 8 Si 0.96 44.50 29.58 68.60 2.03 46.53 16 9 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 C 0.15 6.66 5.32 86.38 0.46 7.12 16 13 C -0.12 -4.41 5.65 30.60 0.17 -4.24 16 14 C 0.14 4.39 5.68 86.38 0.49 4.88 16 15 N -0.71 -18.59 5.55 -463.05 -2.57 -21.16 16 16 C 0.51 13.45 6.45 87.66 0.57 14.02 16 17 O -0.57 -18.68 15.73 -3.00 -0.05 -18.73 16 18 C 0.14 2.84 2.29 44.25 0.10 2.94 16 19 H 0.11 2.53 7.10 -2.39 -0.02 2.52 16 20 N -0.70 -13.23 3.98 -446.09 -1.78 -15.01 16 21 C 0.51 10.09 6.83 87.66 0.60 10.69 16 22 C -0.17 -1.85 10.32 71.24 0.74 -1.11 16 23 O -0.59 -16.28 15.49 -3.03 -0.05 -16.33 16 24 C -0.09 -1.56 2.77 -10.07 -0.03 -1.59 16 25 C -0.12 -1.87 6.27 31.67 0.20 -1.67 16 26 C -0.12 -1.55 6.91 31.89 0.22 -1.33 16 27 C -0.12 -1.49 6.83 31.67 0.22 -1.28 16 28 C -0.12 -2.00 5.78 31.32 0.18 -1.81 16 29 H 0.05 1.61 6.65 -2.39 -0.02 1.59 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.05 1.72 7.83 -2.39 -0.02 1.70 16 34 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.07 3.48 5.40 -2.39 -0.01 3.47 16 36 H 0.03 1.17 7.86 -2.39 -0.02 1.16 16 37 H 0.07 2.24 6.65 -2.39 -0.02 2.23 16 38 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.41 8.78 8.48 -92.70 -0.79 8.00 16 42 H 0.41 6.96 7.16 -92.71 -0.66 6.29 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.09 1.05 8.12 -2.38 -0.02 1.04 16 45 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.06 1.22 5.25 -2.39 -0.01 1.21 16 48 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 50 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.12 5.82 -2.39 -0.01 1.11 16 Total: -1.00 -69.25 422.21 2.00 -67.26 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.56 Total: 27.69 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.43 Total: 13.64 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -5.81 Total: -120.06 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.09 Total: -35.06 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -69.25 2.00 -67.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265122517.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.269 kcal (2) G-P(sol) polarization free energy of solvation -69.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds