Wall clock time and date at job start Tue Mar 31 2020 22:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.09005 * 109.50207 * 324.92485 * 7 6 4 9 9 C 1.53115 * 109.50343 * 84.99816 * 7 6 4 10 10 C 1.53115 * 109.16086 * 177.59623 * 9 7 6 11 11 C 1.53036 * 109.27784 * 302.34720 * 10 9 7 12 12 N 1.46837 * 109.52533 * 59.18373 * 11 10 9 13 13 C 1.46900 * 111.00320 * 174.16283 * 12 11 10 14 14 C 1.50699 * 109.46755 * 293.94848 * 13 12 11 15 15 O 1.21293 * 119.99952 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99872 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99888 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00452 * 359.97438 * 17 16 14 19 19 C 1.38956 * 120.00183 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00131 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99661 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47274 * 89.99900 * 21 19 17 23 23 H 1.48497 * 109.47062 * 209.99589 * 21 19 17 24 24 H 1.48501 * 109.47220 * 329.99955 * 21 19 17 25 25 C 1.46857 * 111.19407 * 298.25550 * 12 11 10 26 26 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 27 27 C 1.53006 * 109.46997 * 60.00177 * 26 2 1 28 28 C 1.53002 * 109.47628 * 180.02562 * 26 2 1 29 29 C 1.53005 * 109.47159 * 300.00546 * 26 2 1 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.52489 * 297.50439 * 9 7 6 35 35 H 1.09001 * 109.52167 * 57.62609 * 9 7 6 36 36 H 1.08997 * 109.50688 * 62.29138 * 10 9 7 37 37 H 1.09003 * 109.50491 * 182.40602 * 10 9 7 38 38 H 1.09003 * 109.46164 * 179.19665 * 11 10 9 39 39 H 1.08994 * 109.46320 * 299.15820 * 11 10 9 40 40 H 1.08993 * 109.47277 * 53.95078 * 13 12 11 41 41 H 1.09005 * 109.47211 * 173.95327 * 13 12 11 42 42 H 0.97001 * 120.00483 * 359.97438 * 16 14 13 43 43 H 0.96993 * 119.99674 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.45899 * 301.72305 * 25 12 11 45 45 H 1.09003 * 109.46040 * 181.75846 * 25 12 11 46 46 H 1.08996 * 109.47261 * 59.99820 * 27 26 2 47 47 H 1.09001 * 109.47377 * 180.02562 * 27 26 2 48 48 H 1.09000 * 109.46866 * 300.00212 * 27 26 2 49 49 H 1.09002 * 109.46838 * 59.99718 * 28 26 2 50 50 H 1.09001 * 109.47142 * 180.02562 * 28 26 2 51 51 H 1.08996 * 109.46698 * 300.00222 * 28 26 2 52 52 H 1.08992 * 109.47061 * 59.99386 * 29 26 2 53 53 H 1.09001 * 109.46812 * 179.97438 * 29 26 2 54 54 H 1.09002 * 109.46935 * 299.99411 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 3.1944 -1.3325 -3.4624 9 6 1.2500 -2.0956 -3.9952 10 6 1.7335 -2.7743 -5.2797 11 6 1.7942 -1.7398 -6.4058 12 7 2.7111 -0.6568 -6.0284 13 6 2.9012 0.2837 -7.1407 14 6 3.6148 -0.4125 -8.2707 15 8 3.9340 -1.5775 -8.1602 16 7 3.8992 0.2595 -9.4038 17 6 4.5479 -0.3740 -10.4321 18 1 4.8314 -1.4115 -10.3341 19 6 4.8406 0.3186 -11.6006 20 7 5.4629 -0.2885 -12.5860 21 14 4.3497 2.1129 -11.7705 22 1 5.4520 2.9767 -11.2766 23 1 4.0824 2.4198 -13.1986 24 1 3.1244 2.3687 -10.9715 25 6 2.2420 0.0405 -4.8240 26 6 2.0400 -0.7212 1.2493 27 6 1.5300 -2.1637 1.2493 28 6 3.5700 -0.7206 1.2497 29 6 1.5299 0.0001 2.4985 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.1494 0.5389 -2.5436 34 1 1.2466 -2.8191 -3.1799 35 1 0.2416 -1.7093 -4.1435 36 1 2.7260 -3.1947 -5.1178 37 1 1.0409 -3.5702 -5.5536 38 1 2.1517 -2.2169 -7.3183 39 1 0.7987 -1.3301 -6.5765 40 1 1.9303 0.6376 -7.4872 41 1 3.4972 1.1313 -6.8020 42 1 3.6443 1.1913 -9.4921 43 1 5.6675 0.1952 -13.4015 44 1 1.2445 0.4420 -5.0022 45 1 2.9250 0.8565 -4.5876 46 1 1.8933 -2.6776 0.3594 47 1 1.8930 -2.6774 2.1395 48 1 0.4400 -2.1637 1.2493 49 1 3.9330 0.3072 1.2498 50 1 3.9333 -1.2348 2.1395 51 1 3.9337 -1.2342 0.3597 52 1 0.4400 0.0001 2.4984 53 1 1.8929 -0.5140 3.3885 54 1 1.8933 1.0278 2.4985 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267627516.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:50 Heat of formation + Delta-G solvation = -101.878064 kcal Electronic energy + Delta-G solvation = -30648.707297 eV Core-core repulsion = 26619.045936 eV Total energy + Delta-G solvation = -4029.661361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.58710 -40.68071 -39.39231 -37.73593 -36.12446 -35.60237 -33.97775 -33.64308 -32.24747 -30.24901 -29.06941 -28.19594 -28.07193 -26.38155 -25.42653 -24.02575 -23.81429 -21.56907 -21.23773 -21.02350 -20.17222 -19.55026 -17.97060 -17.62647 -17.40228 -16.73583 -16.37326 -16.31115 -16.17448 -15.80573 -15.58224 -15.22110 -15.16789 -15.05474 -14.78644 -14.68181 -14.60490 -14.27861 -14.15688 -13.79487 -13.52123 -13.21891 -13.07189 -13.02769 -12.85320 -12.75375 -12.69307 -12.46075 -12.39864 -12.37594 -12.17527 -11.97904 -11.91176 -11.78459 -11.76579 -11.56333 -11.41979 -11.38280 -11.31614 -10.38603 -10.25834 -10.20755 -9.96104 -9.19606 -8.39736 -6.00448 1.30537 1.36979 1.45525 1.74702 1.98289 2.07505 2.24452 2.76151 3.15748 3.24329 3.64806 3.71060 3.85586 3.88496 3.93336 4.04755 4.10004 4.25167 4.29719 4.33679 4.40188 4.42279 4.49125 4.51836 4.57789 4.61458 4.63642 4.71770 4.84877 4.86020 4.90248 4.92419 4.97640 5.00932 5.05287 5.08232 5.13061 5.15407 5.23741 5.27164 5.32089 5.37799 5.43574 5.51982 5.55862 5.60921 5.74635 5.91345 6.03957 6.21808 6.61677 6.66846 6.90743 7.41219 7.42088 8.00315 8.78057 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025278 B = 0.002010 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.424665 B =13926.341819 C =14231.903216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 H 0.114 0.886 4 C 0.513 3.487 5 O -0.565 6.565 6 N -0.712 5.712 7 C 0.156 3.844 8 H 0.061 0.939 9 C -0.115 4.115 10 C -0.107 4.107 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.058 3.942 14 C 0.450 3.550 15 O -0.606 6.606 16 N -0.592 5.592 17 C -0.326 4.326 18 H 0.053 0.947 19 C -0.018 4.018 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.277 1.277 24 H -0.229 1.229 25 C 0.057 3.943 26 C -0.048 4.048 27 C -0.152 4.152 28 C -0.153 4.153 29 C -0.139 4.139 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.055 0.945 52 H 0.070 0.930 53 H 0.054 0.946 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.721 10.340 29.073 35.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.132 0.868 4 C 0.301 3.699 5 O -0.444 6.444 6 N -0.364 5.364 7 C 0.050 3.950 8 H 0.079 0.921 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.073 4.073 12 N -0.265 5.265 13 C -0.073 4.073 14 C 0.237 3.763 15 O -0.490 6.490 16 N -0.234 5.234 17 C -0.455 4.455 18 H 0.071 0.929 19 C -0.217 4.217 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.182 1.182 23 H -0.202 1.202 24 H -0.152 1.152 25 C -0.070 4.070 26 C -0.048 4.048 27 C -0.209 4.209 28 C -0.211 4.211 29 C -0.196 4.196 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.141 0.859 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.089 0.911 53 H 0.073 0.927 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.474 8.650 29.139 34.108 hybrid contribution -0.324 0.754 -1.209 1.461 sum -15.798 9.404 27.930 33.438 Atomic orbital electron populations 1.21918 0.91317 1.02822 1.04234 1.21407 0.98662 1.00730 0.90846 0.86776 1.21218 0.79100 0.84213 0.85331 1.90613 1.39089 1.28036 1.86694 1.45889 1.53714 1.32270 1.04565 1.20635 0.97721 0.92407 0.84226 0.92105 1.21839 0.99454 0.97417 0.96642 1.21441 1.01107 0.97668 0.94357 1.22147 0.93463 0.92766 0.98878 1.61244 1.49756 1.11499 1.04039 1.21794 1.00856 0.95001 0.89639 1.20947 0.83532 0.87581 0.84199 1.90534 1.57326 1.19244 1.81855 1.42023 1.54097 1.12968 1.14345 1.18977 1.34736 0.97368 0.94426 0.92877 1.26152 0.96415 1.04960 0.94135 1.69813 1.41494 1.39820 1.06599 0.85342 0.80433 0.76437 0.79140 1.18214 1.20172 1.15184 1.22274 1.00740 0.95709 0.88318 1.20301 0.95088 0.95324 0.94117 1.22100 1.00730 0.96119 1.01936 1.22078 0.95462 1.01416 1.02093 1.21919 1.01777 1.00227 0.95678 0.92786 0.90669 0.89485 0.74862 0.92638 0.90078 0.93641 0.90322 0.92330 0.93558 0.89867 0.85934 0.77479 0.91225 0.91645 0.88929 0.92641 0.93437 0.92116 0.92672 0.93207 0.92635 0.91098 0.92737 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.38 71.98 0.60 -0.42 16 2 C -0.10 -1.09 2.10 -11.54 -0.02 -1.11 16 3 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.51 9.44 6.53 87.66 0.57 10.01 16 5 O -0.57 -15.50 11.01 -3.02 -0.03 -15.53 16 6 N -0.71 -10.53 4.97 -442.29 -2.20 -12.73 16 7 C 0.16 3.31 2.62 45.04 0.12 3.42 16 8 H 0.06 1.80 7.58 -2.38 -0.02 1.78 16 9 C -0.11 -2.49 5.58 30.67 0.17 -2.32 16 10 C -0.11 -2.92 6.09 30.64 0.19 -2.74 16 11 C 0.05 1.67 5.11 86.33 0.44 2.11 16 12 N -0.54 -15.88 4.39 -900.95 -3.96 -19.84 16 13 C 0.06 1.71 5.45 85.56 0.47 2.18 16 14 C 0.45 20.14 7.46 87.66 0.65 20.80 16 15 O -0.61 -33.64 13.92 -3.07 -0.04 -33.68 16 16 N -0.59 -27.67 5.09 -306.98 -1.56 -29.23 16 17 C -0.33 -19.11 10.16 84.04 0.85 -18.26 16 18 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 19 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 20 N -0.94 -56.79 13.96 21.66 0.30 -56.49 16 21 Si 0.97 38.45 27.74 68.60 1.90 40.35 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 25 C 0.06 1.12 4.93 86.32 0.43 1.54 16 26 C -0.05 -0.67 0.54 -52.18 -0.03 -0.70 16 27 C -0.15 -2.60 7.82 71.98 0.56 -2.04 16 28 C -0.15 -2.75 8.18 71.98 0.59 -2.16 16 29 C -0.14 -1.28 8.12 71.98 0.58 -0.69 16 30 H 0.05 0.53 6.43 -2.39 -0.02 0.51 16 31 H 0.07 0.30 7.56 -2.39 -0.02 0.28 16 32 H 0.09 0.36 6.43 -2.38 -0.02 0.34 16 33 H 0.41 3.16 8.02 -92.71 -0.74 2.42 16 34 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 2.35 5.80 -2.39 -0.01 2.34 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 41 H 0.12 2.88 7.98 -2.38 -0.02 2.86 16 42 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 43 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 1.58 8.01 -2.39 -0.02 1.56 16 46 H 0.05 1.31 5.51 -2.39 -0.01 1.29 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 49 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.05 1.36 5.51 -2.39 -0.01 1.34 16 52 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 53 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 54 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -81.74 405.38 0.62 -81.13 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -0.44 Total: 36.95 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 6.64 Total: 9.07 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -7.42 Total: -118.28 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.08 Total: -49.22 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -81.74 0.62 -81.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267627516.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.752 kcal (2) G-P(sol) polarization free energy of solvation -81.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds