Wall clock time and date at job start Tue Mar 31 2020 23:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46908 * 2 1 4 4 N 1.46492 * 109.47310 * 240.00378 * 2 1 3 5 5 C 1.34774 * 120.00400 * 84.99717 * 4 2 1 6 6 O 1.21280 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00132 * 180.02562 * 5 4 2 8 8 C 1.52995 * 109.47262 * 180.02562 * 7 5 4 9 9 C 1.53008 * 109.47111 * 299.99835 * 7 5 4 10 10 C 1.53004 * 109.47445 * 59.99852 * 7 5 4 11 11 C 1.50699 * 109.47289 * 119.99694 * 2 1 3 12 12 O 1.21279 * 120.00160 * 119.99976 * 11 2 1 13 13 N 1.34779 * 120.00038 * 300.00820 * 11 2 1 14 14 C 1.46504 * 119.99790 * 179.97438 * 13 11 2 15 15 H 1.08997 * 109.47086 * 324.99108 * 14 13 11 16 16 C 1.52995 * 109.47224 * 84.99532 * 14 13 11 17 17 C 1.53000 * 109.46990 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47573 * 300.00080 * 17 16 14 19 19 H 1.09009 * 109.46923 * 300.00200 * 18 17 16 20 20 N 1.46490 * 109.47539 * 179.97438 * 18 17 16 21 21 C 1.36935 * 120.00121 * 84.99635 * 20 18 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.53002 * 109.46752 * 59.99576 * 18 17 16 30 30 C 1.53000 * 109.47586 * 300.00153 * 29 18 17 31 31 H 1.09005 * 109.47479 * 300.00027 * 1 2 3 32 32 H 1.08998 * 109.47480 * 59.99976 * 1 2 3 33 33 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 34 34 H 0.97003 * 119.99850 * 264.99961 * 4 2 1 35 35 H 1.08999 * 109.47578 * 59.99634 * 8 7 5 36 36 H 1.09005 * 109.47134 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47198 * 299.99843 * 8 7 5 38 38 H 1.09001 * 109.46691 * 60.00082 * 9 7 5 39 39 H 1.08996 * 109.47128 * 179.97438 * 9 7 5 40 40 H 1.08995 * 109.47083 * 300.00172 * 9 7 5 41 41 H 1.08996 * 109.46487 * 60.00043 * 10 7 5 42 42 H 1.08996 * 109.47478 * 180.02562 * 10 7 5 43 43 H 1.09002 * 109.46710 * 300.00410 * 10 7 5 44 44 H 0.96998 * 120.00101 * 359.97438 * 13 11 2 45 45 H 1.08999 * 109.47693 * 300.00012 * 16 14 13 46 46 H 1.09002 * 109.47109 * 60.00105 * 16 14 13 47 47 H 1.09003 * 109.46892 * 180.02562 * 17 16 14 48 48 H 1.09002 * 109.46796 * 60.00296 * 17 16 14 49 49 H 0.97000 * 120.00577 * 265.00234 * 20 18 17 50 50 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 51 51 H 1.08997 * 109.47273 * 60.00509 * 29 18 17 52 52 H 1.09000 * 109.46894 * 180.02562 * 29 18 17 53 53 H 1.08994 * 109.46947 * 180.02562 * 30 29 18 54 54 H 1.08997 * 109.47105 * 300.00459 * 30 29 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1585 -2.4118 7 6 2.6489 -0.7287 -3.5877 8 6 2.7011 0.2546 -4.7587 9 6 4.0514 -1.2796 -3.3222 10 6 1.7044 -1.8823 -3.9314 11 6 2.0324 -0.7103 1.2305 12 8 2.7296 -1.6964 1.1193 13 7 1.7067 -0.2499 2.4546 14 6 2.1946 -0.9408 3.6508 15 1 2.2309 -2.0136 3.4613 16 6 3.5973 -0.4360 3.9949 17 6 4.1065 -1.1571 5.2445 18 6 3.1623 -0.8772 6.4153 19 1 3.1261 0.1957 6.6044 20 7 3.6496 -1.5682 7.6116 21 6 4.5967 -0.9780 8.4052 22 1 4.9842 -0.0029 8.1493 23 6 5.0589 -1.6329 9.5385 24 7 4.5871 -2.8215 9.8500 25 14 6.3504 -0.8274 10.6214 26 1 6.6725 -1.7256 11.7593 27 1 7.5788 -0.5784 9.8249 28 1 5.8272 0.4618 11.1404 29 6 1.7596 -1.3821 6.0711 30 6 1.2503 -0.6609 4.8216 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6317 -1.1526 35 1 3.3741 1.0762 -4.5136 36 1 3.0645 -0.2593 -5.6487 37 1 1.7021 0.6475 -4.9480 38 1 4.0146 -1.9800 -2.4878 39 1 4.4142 -1.7939 -4.2121 40 1 4.7243 -0.4578 -3.0773 41 1 0.7054 -1.4897 -4.1205 42 1 2.0676 -2.3965 -4.8212 43 1 1.6677 -2.5827 -3.0970 44 1 1.1492 0.5389 2.5436 45 1 4.2699 -0.6349 3.1606 46 1 3.5609 0.6369 4.1844 47 1 5.1057 -0.7970 5.4898 48 1 4.1428 -2.2300 5.0553 49 1 3.3015 -2.4438 7.8417 50 1 3.9162 -3.2396 9.2879 51 1 1.7958 -2.4549 5.8821 52 1 1.0868 -1.1823 6.9051 53 1 0.2508 -1.0203 4.5768 54 1 1.2141 0.4119 5.0107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267927570.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:44 Heat of formation + Delta-G solvation = -119.357924 kcal Electronic energy + Delta-G solvation = -30215.314458 eV Core-core repulsion = 26184.895114 eV Total energy + Delta-G solvation = -4030.419345 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77184 -40.83941 -39.44293 -36.79805 -36.64679 -36.07614 -34.92010 -32.61585 -31.78111 -31.38685 -28.70963 -28.26273 -28.05643 -26.04253 -25.42031 -23.94984 -23.57445 -22.45315 -21.46352 -20.96901 -20.58169 -19.35617 -18.50126 -17.86698 -17.32071 -17.10225 -16.76035 -16.33637 -16.03480 -15.93946 -15.54001 -15.36717 -15.15043 -15.07112 -14.79621 -14.71049 -14.53170 -14.06526 -13.69843 -13.54527 -13.42769 -13.28097 -13.16993 -13.10519 -13.04657 -12.90128 -12.74131 -12.67028 -12.64981 -12.38596 -12.25647 -12.10651 -11.93457 -11.89195 -11.87502 -11.54435 -11.50067 -11.14786 -10.99966 -10.85328 -10.76368 -10.28170 -10.11440 -9.11015 -8.38445 -5.31778 1.42159 1.53286 1.57059 1.67027 1.74792 1.83258 2.31865 2.71144 3.39653 3.42921 3.57510 3.68817 3.72463 3.78699 3.80846 3.88321 3.98332 4.06436 4.19373 4.24901 4.28449 4.29051 4.43732 4.50895 4.55170 4.61886 4.67752 4.68710 4.75018 4.76875 4.80027 4.88686 4.91593 4.92870 4.98807 5.03182 5.06396 5.14111 5.16239 5.18235 5.19366 5.27029 5.29360 5.35155 5.39541 5.44747 5.53448 5.61679 6.40373 6.42801 6.50445 7.08752 7.11317 7.12535 8.01940 8.13047 9.13586 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023731 B = 0.001874 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.593717 B =14940.954446 C =15424.765503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 H 0.112 0.888 4 N -0.709 5.709 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.084 4.084 8 C -0.125 4.125 9 C -0.141 4.141 10 C -0.138 4.138 11 C 0.513 3.487 12 O -0.571 6.571 13 N -0.702 5.702 14 C 0.155 3.845 15 H 0.070 0.930 16 C -0.113 4.113 17 C -0.121 4.121 18 C 0.176 3.824 19 H 0.044 0.956 20 N -0.751 5.751 21 C -0.326 4.326 22 H 0.065 0.935 23 C -0.108 4.108 24 N -0.977 5.977 25 Si 1.126 2.874 26 H -0.293 1.293 27 H -0.281 1.281 28 H -0.276 1.276 29 C -0.114 4.114 30 C -0.105 4.105 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.412 0.588 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.064 0.936 44 H 0.418 0.582 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.358 0.642 50 H 0.244 0.756 51 H 0.054 0.946 52 H 0.066 0.934 53 H 0.094 0.906 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 5.762 -29.741 32.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.018 3.982 3 H 0.129 0.871 4 N -0.362 5.362 5 C 0.311 3.689 6 O -0.454 6.454 7 C -0.087 4.087 8 C -0.183 4.183 9 C -0.198 4.198 10 C -0.196 4.196 11 C 0.299 3.701 12 O -0.450 6.450 13 N -0.354 5.354 14 C 0.050 3.950 15 H 0.088 0.912 16 C -0.152 4.152 17 C -0.162 4.162 18 C 0.068 3.932 19 H 0.062 0.938 20 N -0.392 5.392 21 C -0.458 4.458 22 H 0.083 0.917 23 C -0.299 4.299 24 N -0.625 5.625 25 Si 0.951 3.049 26 H -0.220 1.220 27 H -0.207 1.207 28 H -0.202 1.202 29 C -0.153 4.153 30 C -0.144 4.144 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.256 0.744 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.190 0.810 50 H 0.054 0.946 51 H 0.073 0.927 52 H 0.085 0.915 53 H 0.112 0.888 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.784 5.957 -28.518 30.732 hybrid contribution -0.719 -0.389 -0.837 1.171 sum -10.503 5.568 -29.355 31.671 Atomic orbital electron populations 1.22100 0.90840 1.03587 1.04477 1.20814 0.97077 0.97550 0.82798 0.87058 1.45838 1.66992 1.15016 1.08371 1.21141 0.76032 0.86692 0.85001 1.90670 1.51641 1.17470 1.85636 1.20874 0.98015 0.97476 0.92339 1.21661 1.02245 0.97929 0.96443 1.21894 0.93335 1.01019 1.03581 1.21881 0.98305 0.95942 1.03424 1.20855 0.79543 0.84188 0.85540 1.90710 1.39267 1.28017 1.87034 1.45850 1.52955 1.32269 1.04334 1.20847 0.93058 0.96876 0.84184 0.91186 1.21765 0.96480 1.00595 0.96359 1.21994 0.99418 0.99203 0.95584 1.20446 0.92374 0.95358 0.85022 0.93806 1.42682 1.48603 1.20478 1.27478 1.20361 1.16843 1.02284 1.06292 0.91736 1.27168 1.05509 0.97485 0.99768 1.70992 1.32908 1.16982 1.41647 0.82647 0.73526 0.74296 0.74442 1.21957 1.20719 1.20184 1.21650 0.95572 1.00019 0.98011 1.21652 0.98767 1.02184 0.91767 0.88556 0.91420 0.91472 0.74968 0.93395 0.89671 0.92774 0.91991 0.89187 0.93156 0.92237 0.89369 0.91654 0.74405 0.93284 0.90771 0.94526 0.94180 0.81000 0.94605 0.92684 0.91539 0.88786 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.38 71.98 0.68 -1.07 16 2 C 0.13 2.05 2.98 44.25 0.13 2.18 16 3 H 0.11 1.91 7.58 -2.38 -0.02 1.90 16 4 N -0.71 -12.23 4.74 -446.11 -2.11 -14.34 16 5 C 0.52 9.96 6.45 87.66 0.56 10.52 16 6 O -0.58 -14.70 15.64 -3.03 -0.05 -14.75 16 7 C -0.08 -1.11 0.87 -52.93 -0.05 -1.16 16 8 C -0.13 -1.65 7.76 71.98 0.56 -1.09 16 9 C -0.14 -1.66 8.37 71.98 0.60 -1.06 16 10 C -0.14 -1.25 8.37 71.98 0.60 -0.65 16 11 C 0.51 10.34 7.19 87.66 0.63 10.97 16 12 O -0.57 -16.02 15.50 -3.03 -0.05 -16.07 16 13 N -0.70 -11.69 4.97 -442.53 -2.20 -13.88 16 14 C 0.16 3.50 2.45 44.99 0.11 3.61 16 15 H 0.07 1.91 7.58 -2.39 -0.02 1.90 16 16 C -0.11 -3.13 5.49 30.59 0.17 -2.97 16 17 C -0.12 -4.43 5.50 30.59 0.17 -4.26 16 18 C 0.18 6.78 2.77 44.99 0.12 6.90 16 19 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 20 N -0.75 -37.94 5.12 -322.95 -1.65 -39.59 16 21 C -0.33 -18.47 9.93 84.03 0.83 -17.64 16 22 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 23 C -0.11 -6.37 5.50 84.86 0.47 -5.90 16 24 N -0.98 -61.90 13.70 21.65 0.30 -61.60 16 25 Si 1.13 52.61 29.92 68.60 2.05 54.66 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 29 C -0.11 -3.36 5.39 30.60 0.16 -3.20 16 30 C -0.11 -2.10 5.39 30.60 0.16 -1.94 16 31 H 0.10 0.65 7.57 -2.38 -0.02 0.64 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.41 6.81 6.63 -92.71 -0.61 6.19 16 35 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 36 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 38 H 0.06 0.76 7.56 -2.39 -0.02 0.74 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.06 0.55 7.56 -2.39 -0.02 0.53 16 44 H 0.42 4.12 8.02 -92.71 -0.74 3.37 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.36 18.97 6.63 -92.71 -0.61 18.36 16 50 H 0.24 15.36 6.77 -92.71 -0.63 14.74 16 51 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 53 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.91 424.84 1.27 -75.64 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.94 Total: 36.67 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 5.92 Total: -6.73 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.67 Total: -129.43 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.09 Total: -30.82 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 2.05 Total: 54.66 kcal Total: -76.91 1.27 -75.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267927570.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.716 kcal (2) G-P(sol) polarization free energy of solvation -76.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds