Wall clock time and date at job start Wed Apr 1 2020 00:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47002 * 2 1 4 4 C 1.46498 * 119.99874 * 270.00290 * 3 2 1 5 5 C 1.53008 * 109.46884 * 269.99915 * 4 3 2 6 6 C 1.34780 * 120.00223 * 89.99872 * 3 2 1 7 7 O 1.21276 * 119.99850 * 0.02562 * 6 3 2 8 8 C 1.50697 * 120.00072 * 180.02562 * 6 3 2 9 9 C 1.53001 * 109.47101 * 180.02562 * 8 6 3 10 10 C 1.52997 * 109.46943 * 179.97438 * 9 8 6 11 11 C 1.50704 * 109.47291 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99351 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00481 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99419 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00148 * 179.97438 * 13 11 10 16 16 H 1.09002 * 110.91399 * 350.51772 * 15 13 11 17 17 C 1.55151 * 111.00623 * 226.61211 * 15 13 11 18 18 C 1.54320 * 102.94334 * 277.43135 * 17 15 13 19 19 N 1.47027 * 107.27334 * 337.80272 * 18 17 15 20 20 C 1.36929 * 125.65463 * 178.97337 * 19 18 17 21 21 H 1.08003 * 120.00350 * 179.97438 * 20 19 18 22 22 C 1.38819 * 119.99970 * 359.97438 * 20 19 18 23 23 N 1.31620 * 119.99766 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00218 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47141 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47276 * 119.99542 * 24 22 20 27 27 H 1.48499 * 109.47066 * 239.99595 * 24 22 20 28 28 C 1.47423 * 108.69771 * 358.94803 * 19 18 17 29 29 H 1.08991 * 109.47149 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.46891 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46837 * 299.99923 * 1 2 3 32 32 H 1.08989 * 109.46998 * 240.00000 * 2 1 3 33 33 H 1.09003 * 109.46720 * 119.99689 * 2 1 3 34 34 H 1.09001 * 109.47662 * 29.99454 * 4 3 2 35 35 H 1.08996 * 109.47321 * 150.00117 * 4 3 2 36 36 H 1.08997 * 109.46941 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.46711 * 299.99675 * 5 4 3 38 38 H 1.08996 * 109.46977 * 59.99991 * 5 4 3 39 39 H 1.09002 * 109.47337 * 59.99652 * 8 6 3 40 40 H 1.09003 * 109.47107 * 300.00076 * 8 6 3 41 41 H 1.09000 * 109.46813 * 59.99657 * 9 8 6 42 42 H 1.08993 * 109.46806 * 299.99590 * 9 8 6 43 43 H 1.09000 * 109.47246 * 60.00412 * 10 9 8 44 44 H 1.09003 * 109.47587 * 300.00251 * 10 9 8 45 45 H 1.09001 * 109.47209 * 263.94367 * 14 13 11 46 46 H 1.09003 * 109.47593 * 23.95065 * 14 13 11 47 47 H 1.09009 * 109.46707 * 143.94898 * 14 13 11 48 48 H 1.08995 * 110.71977 * 159.06502 * 17 15 13 49 49 H 1.09001 * 110.72028 * 35.79299 * 17 15 13 50 50 H 1.09005 * 109.88400 * 218.38885 * 18 17 15 51 51 H 1.09003 * 109.88629 * 97.22164 * 18 17 15 52 52 H 0.96994 * 120.00135 * 180.02562 * 23 22 20 53 53 H 1.08996 * 110.36886 * 142.96549 * 28 19 18 54 54 H 1.09005 * 110.36401 * 265.28278 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2430 2.0166 1.1672 7 8 2.0413 1.4448 2.2175 8 6 2.7447 3.4376 1.1672 9 6 2.9154 3.9183 2.6097 10 6 3.4254 5.3607 2.6096 11 6 3.5930 5.8344 4.0304 12 8 3.3308 5.0912 4.9522 13 7 4.0352 7.0835 4.2767 14 6 4.3525 7.9810 3.1631 15 6 4.1975 7.5441 5.6578 16 1 3.7663 6.8300 6.3594 17 6 3.5803 8.9545 5.8500 18 6 4.6969 9.8923 5.3448 19 7 5.9625 9.1487 5.4285 20 6 7.1921 9.6212 5.0544 21 1 8.0655 8.9940 5.1561 22 6 7.3160 10.9063 4.5443 23 7 6.2516 11.6704 4.4199 24 14 8.9934 11.5511 4.0346 25 1 10.0195 10.5047 4.2735 26 1 8.9710 11.9029 2.5921 27 1 9.3232 12.7587 4.8335 28 6 5.6886 7.8103 5.9826 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.8893 2.3456 -2.6542 37 1 4.3883 2.2156 -0.9508 38 1 3.8745 0.7622 -1.8407 39 1 2.0264 4.0766 0.6534 40 1 3.7048 3.4839 0.6531 41 1 3.6339 3.2792 3.1229 42 1 1.9556 3.8719 3.1240 43 1 2.7072 6.0000 2.0962 44 1 4.3854 5.4068 2.0952 45 1 5.4220 7.9403 2.9570 46 1 3.7995 7.6699 2.2767 47 1 4.0719 9.0007 3.4270 48 1 3.3661 9.1417 6.9021 49 1 2.6798 9.0669 5.2461 50 1 4.7471 10.7813 5.9735 51 1 4.5022 10.1774 4.3109 52 1 6.3381 12.5682 4.0632 53 1 6.3208 7.0639 5.5017 54 1 5.8486 7.8062 7.0609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318436119.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:33 Heat of formation + Delta-G solvation = -66.320798 kcal Electronic energy + Delta-G solvation = -30372.635713 eV Core-core repulsion = 26344.516231 eV Total energy + Delta-G solvation = -4028.119482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.31502 -40.94082 -39.08262 -37.24083 -35.83759 -35.38599 -33.95753 -32.99942 -31.19798 -30.62051 -29.89063 -28.97567 -27.26717 -26.23522 -24.85421 -24.38485 -22.97995 -21.95868 -21.57131 -19.98848 -19.65758 -18.92799 -18.21005 -18.02023 -17.44418 -17.12594 -16.92893 -16.65204 -16.32051 -15.65645 -15.55966 -15.24193 -14.89625 -14.78147 -14.65930 -14.28273 -14.20321 -13.84575 -13.67462 -13.50404 -13.45865 -13.41066 -13.16056 -12.98461 -12.86210 -12.81688 -12.78106 -12.73466 -12.59288 -12.29792 -12.24911 -12.00215 -11.97932 -11.92755 -11.88907 -11.75941 -11.64753 -11.53145 -10.85842 -10.70725 -10.58209 -9.68900 -9.62609 -8.78192 -7.81444 -5.15353 1.48211 1.50125 1.59155 1.65602 1.68457 1.98217 2.18378 2.51792 3.37715 3.54271 3.58275 3.68967 3.89357 4.03002 4.04384 4.06331 4.11548 4.16752 4.25247 4.31806 4.35839 4.46214 4.50026 4.53873 4.57115 4.63986 4.65486 4.67748 4.71105 4.74941 4.78212 4.80760 4.89494 4.97205 5.00129 5.03879 5.04936 5.06460 5.17116 5.19212 5.26695 5.38305 5.43236 5.49630 5.64861 5.67347 5.69982 5.84221 6.23060 6.42480 6.56402 7.14849 7.22398 7.24563 7.79219 8.45009 9.28712 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017555 B = 0.002117 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.599700 B =13222.449275 C =14213.144381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.613 5.613 4 C 0.098 3.902 5 C -0.172 4.172 6 C 0.504 3.496 7 O -0.591 6.591 8 C -0.130 4.130 9 C -0.081 4.081 10 C -0.127 4.127 11 C 0.503 3.497 12 O -0.593 6.593 13 N -0.593 5.593 14 C 0.079 3.921 15 C 0.131 3.869 16 H 0.098 0.902 17 C -0.140 4.140 18 C 0.184 3.816 19 N -0.615 5.615 20 C -0.235 4.235 21 H 0.074 0.926 22 C -0.057 4.057 23 N -0.945 5.945 24 Si 0.972 3.028 25 H -0.273 1.273 26 H -0.288 1.288 27 H -0.297 1.297 28 C 0.125 3.875 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.127 0.873 44 H 0.116 0.884 45 H 0.041 0.959 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.004 0.996 51 H 0.042 0.958 52 H 0.247 0.753 53 H 0.033 0.967 54 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -17.540 -17.949 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.346 5.346 4 C -0.024 4.024 5 C -0.230 4.230 6 C 0.294 3.706 7 O -0.472 6.472 8 C -0.170 4.170 9 C -0.119 4.119 10 C -0.166 4.166 11 C 0.294 3.706 12 O -0.474 6.474 13 N -0.324 5.324 14 C -0.062 4.062 15 C 0.026 3.974 16 H 0.116 0.884 17 C -0.179 4.179 18 C 0.059 3.941 19 N -0.341 5.341 20 C -0.364 4.364 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.594 5.594 24 Si 0.802 3.198 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.225 1.225 28 C -0.001 4.001 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.145 0.855 44 H 0.134 0.866 45 H 0.059 0.941 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.022 0.978 51 H 0.060 0.940 52 H 0.057 0.943 53 H 0.052 0.948 54 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.230 -18.046 -17.040 27.242 hybrid contribution 1.146 0.613 0.445 1.374 sum -10.084 -17.433 -16.595 26.095 Atomic orbital electron populations 1.22064 0.95380 1.02830 1.01591 1.21477 0.94810 0.82450 1.02986 1.48242 1.65225 1.14489 1.06642 1.21888 0.97631 0.98792 0.84091 1.22215 0.96061 1.02304 1.02401 1.21305 0.76529 0.89780 0.83032 1.90706 1.53979 1.69319 1.33168 1.21752 1.05063 0.91914 0.98223 1.20918 1.01157 0.94087 0.95781 1.21727 1.05618 0.97472 0.91803 1.21480 0.75562 0.80463 0.93137 1.90660 1.53123 1.55269 1.48347 1.47809 1.64198 1.13481 1.06946 1.22071 1.00704 0.94904 0.88566 1.22028 0.95497 0.95912 0.83964 0.88364 1.23107 0.98639 0.93976 1.02140 1.21121 0.83182 0.91504 0.98247 1.44654 1.04068 1.11208 1.74210 1.19328 0.85302 0.97264 1.34490 0.90855 1.25468 1.00463 0.96884 1.02188 1.70136 1.28203 1.08927 1.52101 0.85102 0.79803 0.77694 0.77241 1.19771 1.21443 1.22452 1.21973 0.94537 0.87470 0.96146 0.91044 0.90468 0.95009 0.88011 0.92657 0.88390 0.88278 0.89512 0.93103 0.92910 0.85480 0.86213 0.93856 0.93252 0.85489 0.86565 0.94058 0.87883 0.90901 0.90117 0.89755 0.97816 0.94040 0.94321 0.94842 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 10.24 71.98 0.74 -1.27 16 2 C 0.11 1.45 6.13 86.38 0.53 1.98 16 3 N -0.61 -8.70 2.47 -821.81 -2.03 -10.73 16 4 C 0.10 0.58 5.93 86.38 0.51 1.10 16 5 C -0.17 -1.01 10.24 71.98 0.74 -0.27 16 6 C 0.50 10.69 7.67 87.66 0.67 11.36 16 7 O -0.59 -19.10 15.56 -3.02 -0.05 -19.15 16 8 C -0.13 -1.92 4.25 29.85 0.13 -1.79 16 9 C -0.08 -1.90 3.79 30.59 0.12 -1.78 16 10 C -0.13 -2.60 4.17 29.85 0.12 -2.48 16 11 C 0.50 16.05 7.67 87.66 0.67 16.73 16 12 O -0.59 -23.91 15.39 -3.04 -0.05 -23.96 16 13 N -0.59 -19.64 2.91 -814.82 -2.37 -22.01 16 14 C 0.08 2.42 9.05 127.77 1.16 3.58 16 15 C 0.13 4.85 3.64 46.38 0.17 5.02 16 16 H 0.10 3.68 7.07 -2.39 -0.02 3.66 16 17 C -0.14 -5.06 6.07 31.78 0.19 -4.87 16 18 C 0.18 8.51 4.35 86.73 0.38 8.88 16 19 N -0.61 -30.30 2.87 -691.97 -1.98 -32.28 16 20 C -0.23 -12.70 10.28 84.04 0.86 -11.84 16 21 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 22 C -0.06 -3.07 5.49 84.86 0.47 -2.61 16 23 N -0.94 -53.51 10.31 21.65 0.22 -53.29 16 24 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 28 C 0.13 5.34 6.76 86.86 0.59 5.93 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.10 0.82 8.07 -2.39 -0.02 0.80 16 33 H 0.05 1.07 7.42 -2.39 -0.02 1.06 16 34 H 0.10 0.26 8.07 -2.39 -0.02 0.24 16 35 H 0.10 0.30 6.44 -2.39 -0.02 0.28 16 36 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.05 0.42 7.22 -2.38 -0.02 0.40 16 38 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.13 1.05 7.40 -2.39 -0.02 1.03 16 40 H 0.12 1.19 7.19 -2.39 -0.02 1.17 16 41 H 0.04 1.29 8.06 -2.39 -0.02 1.27 16 42 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 43 H 0.13 1.77 7.42 -2.39 -0.02 1.75 16 44 H 0.12 1.92 8.11 -2.39 -0.02 1.90 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.10 2.11 6.23 -2.39 -0.01 2.10 16 47 H 0.07 2.58 4.19 -2.38 -0.01 2.57 16 48 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 49 H 0.08 2.73 8.07 -2.39 -0.02 2.71 16 50 H 0.00 0.19 7.51 -2.38 -0.02 0.18 16 51 H 0.04 2.04 5.10 -2.39 -0.01 2.03 16 52 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 53 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 54 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -77.93 417.14 4.67 -73.26 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.86 Total: 14.18 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 8.04 Total: 27.66 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -6.16 Total: -118.31 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -0.09 Total: -43.11 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -77.93 4.67 -73.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318436119.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.939 kcal (2) G-P(sol) polarization free energy of solvation -77.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds