Wall clock time and date at job start Tue Mar 31 2020 23:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46907 * 109.46815 * 2 1 4 4 C 1.46848 * 111.00114 * 51.57324 * 3 2 1 5 5 C 1.53036 * 109.52031 * 185.83786 * 4 3 2 6 6 C 1.53111 * 109.28277 * 300.82236 * 5 4 3 7 7 C 1.53116 * 109.15359 * 57.65914 * 6 5 4 8 8 C 1.46852 * 110.99763 * 175.78269 * 3 2 1 9 9 H 1.09000 * 109.46246 * 294.16440 * 8 3 2 10 10 C 1.50696 * 109.46224 * 54.14323 * 8 3 2 11 11 O 1.21286 * 120.00348 * 25.73647 * 10 8 3 12 12 N 1.34776 * 119.99996 * 205.73643 * 10 8 3 13 13 C 1.47203 * 120.81413 * 354.65080 * 12 10 8 14 14 C 1.53194 * 108.85638 * 126.33541 * 13 12 10 15 15 C 1.53042 * 109.30809 * 54.65452 * 14 13 12 16 16 C 1.53043 * 109.53769 * 298.63209 * 15 14 13 17 17 C 1.53001 * 109.49847 * 181.31855 * 16 15 14 18 18 O 1.42899 * 109.46875 * 65.16441 * 17 16 15 19 19 N 1.46503 * 109.52700 * 301.40250 * 16 15 14 20 20 C 1.36941 * 119.99788 * 299.85242 * 19 16 15 21 21 H 1.08001 * 119.99712 * 0.02562 * 20 19 16 22 22 C 1.38808 * 120.00088 * 179.97438 * 20 19 16 23 23 N 1.31624 * 119.99956 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00078 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46862 * 90.00301 * 24 22 20 26 26 H 1.48497 * 109.47177 * 209.99960 * 24 22 20 27 27 H 1.48498 * 109.47352 * 330.00290 * 24 22 20 28 28 C 1.46926 * 120.63189 * 174.50907 * 12 10 8 29 29 H 1.09002 * 109.46868 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47408 * 300.00318 * 1 2 3 31 31 H 1.09000 * 109.46906 * 60.00516 * 1 2 3 32 32 H 1.08997 * 109.47305 * 240.00076 * 2 1 3 33 33 H 1.08997 * 109.47403 * 119.99393 * 2 1 3 34 34 H 1.08997 * 109.45989 * 305.85742 * 4 3 2 35 35 H 1.09000 * 109.46115 * 65.82710 * 4 3 2 36 36 H 1.09003 * 109.50537 * 60.76426 * 5 4 3 37 37 H 1.09002 * 109.50571 * 180.87798 * 5 4 3 38 38 H 1.09005 * 109.52765 * 177.56210 * 6 5 4 39 39 H 1.09008 * 109.52106 * 297.68741 * 6 5 4 40 40 H 1.09007 * 109.49563 * 182.39681 * 7 6 5 41 41 H 1.09002 * 109.51253 * 62.28200 * 7 6 5 42 42 H 1.09002 * 109.53551 * 6.53430 * 13 12 10 43 43 H 1.09000 * 109.68252 * 246.22974 * 13 12 10 44 44 H 1.08997 * 109.49655 * 294.70276 * 14 13 12 45 45 H 1.09001 * 109.52405 * 174.61636 * 14 13 12 46 46 H 1.09009 * 109.45773 * 178.61755 * 15 14 13 47 47 H 1.09001 * 109.46463 * 58.65624 * 15 14 13 48 48 H 1.08995 * 109.47316 * 185.16135 * 17 16 15 49 49 H 1.09002 * 109.46996 * 305.16709 * 17 16 15 50 50 H 0.96706 * 114.00184 * 180.02562 * 18 17 16 51 51 H 0.96994 * 120.00381 * 119.85026 * 19 16 15 52 52 H 0.96990 * 120.00050 * 180.02562 * 23 22 20 53 53 H 1.09000 * 109.58800 * 113.82007 * 28 12 10 54 54 H 1.08998 * 109.58849 * 353.53831 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.3916 2.1653 1.0740 5 6 1.8124 3.6317 0.9539 6 6 3.3373 3.7298 1.0510 7 6 3.9670 2.8700 -0.0485 8 6 3.4841 1.4255 0.1008 9 1 3.7921 1.0381 1.0720 10 6 4.0861 0.5794 -0.9912 11 8 3.4702 0.3864 -2.0181 12 7 5.3090 0.0371 -0.8269 13 6 6.1209 0.3535 0.3596 14 6 6.5422 -0.9555 1.0346 15 6 7.2482 -1.8481 0.0114 16 6 6.2835 -2.1815 -1.1290 17 6 6.9797 -3.1005 -2.1347 18 8 7.2712 -4.3535 -1.5125 19 7 5.1004 -2.8554 -0.5883 20 6 5.2350 -4.0408 0.0839 21 1 6.2134 -4.4787 0.2157 22 6 4.1141 -4.6791 0.5967 23 7 2.9217 -4.1452 0.4364 24 14 4.2977 -6.2965 1.5130 25 1 4.4987 -6.0260 2.9592 26 1 3.0707 -7.1123 1.3279 27 1 5.4695 -7.0370 0.9803 28 6 5.8592 -0.8863 -1.8285 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.3074 2.0905 0.9909 35 1 1.7096 1.7742 2.0405 36 1 1.4828 4.0275 -0.0067 37 1 1.3587 4.2078 1.7604 38 1 3.6446 4.7677 0.9226 39 1 3.6640 3.3712 2.0272 40 1 5.0528 2.9019 0.0419 41 1 3.6711 3.2536 -1.0249 42 1 5.5317 0.9504 1.0558 43 1 7.0076 0.9118 0.0593 44 1 5.6596 -1.4682 1.4170 45 1 7.2223 -0.7382 1.8583 46 1 7.5709 -2.7701 0.4952 47 1 8.1167 -1.3251 -0.3889 48 1 6.3256 -3.2637 -2.9912 49 1 7.9075 -2.6365 -2.4692 50 1 7.7144 -4.9873 -2.0930 51 1 4.2217 -2.4619 -0.7063 52 1 2.1386 -4.5910 0.7951 53 1 6.7246 -0.4303 -2.3095 54 1 5.0992 -1.1078 -2.5778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327607771.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:29 Heat of formation + Delta-G solvation = -81.868985 kcal Electronic energy + Delta-G solvation = -33432.514914 eV Core-core repulsion = 29403.721211 eV Total energy + Delta-G solvation = -4028.793702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77571 -40.08287 -38.67293 -37.13517 -35.63519 -35.19336 -33.81712 -32.73923 -32.22299 -30.58552 -30.45824 -27.08587 -26.66726 -25.65932 -25.47377 -24.36558 -23.04974 -22.29343 -21.13133 -20.29981 -19.70239 -19.16972 -18.28115 -17.90767 -17.33169 -16.67035 -16.36211 -16.18471 -15.90177 -15.76407 -15.68107 -15.40227 -15.13659 -14.91506 -14.77644 -14.46271 -14.29831 -14.26449 -14.09606 -13.75224 -13.48470 -13.44570 -13.25135 -12.84741 -12.74003 -12.69800 -12.64358 -12.62222 -12.31303 -12.13859 -11.98846 -11.84505 -11.75662 -11.64757 -11.55729 -11.49420 -11.25320 -11.18307 -10.77366 -10.54589 -10.47380 -9.51954 -9.27936 -8.85349 -7.75887 -5.00576 1.45069 1.46446 1.55030 1.60339 2.01706 2.64960 2.86911 3.42334 3.46880 3.69503 3.78701 3.83270 3.93679 3.96660 4.05885 4.12194 4.16591 4.20248 4.25049 4.30635 4.38172 4.41404 4.48484 4.53730 4.55881 4.57079 4.61072 4.65460 4.70836 4.79229 4.83877 4.87849 4.95118 4.98088 4.99995 5.02949 5.09729 5.16707 5.17270 5.21510 5.29345 5.31348 5.48864 5.55004 5.58499 5.67348 5.93928 5.96015 6.15337 6.44340 6.50543 7.14345 7.26349 7.51816 8.22470 8.46556 9.47692 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.004650 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.921977 B = 6019.470024 C = 7313.401763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 N -0.522 5.522 4 C 0.045 3.955 5 C -0.113 4.113 6 C -0.114 4.114 7 C -0.099 4.099 8 C 0.074 3.926 9 H 0.058 0.942 10 C 0.517 3.483 11 O -0.570 6.570 12 N -0.600 5.600 13 C 0.109 3.891 14 C -0.125 4.125 15 C -0.109 4.109 16 C 0.175 3.825 17 C 0.076 3.924 18 O -0.563 6.563 19 N -0.713 5.713 20 C -0.173 4.173 21 H 0.094 0.906 22 C -0.095 4.095 23 N -0.977 5.977 24 Si 0.956 3.044 25 H -0.297 1.297 26 H -0.309 1.309 27 H -0.273 1.273 28 C 0.121 3.879 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.005 0.995 34 H 0.089 0.911 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.022 0.978 49 H 0.069 0.931 50 H 0.373 0.627 51 H 0.362 0.638 52 H 0.237 0.763 53 H 0.104 0.896 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 18.227 1.020 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 N -0.248 5.248 4 C -0.082 4.082 5 C -0.151 4.151 6 C -0.151 4.151 7 C -0.137 4.137 8 C -0.037 4.037 9 H 0.075 0.925 10 C 0.305 3.695 11 O -0.448 6.448 12 N -0.332 5.332 13 C -0.012 4.012 14 C -0.163 4.163 15 C -0.148 4.148 16 C 0.084 3.916 17 C -0.005 4.005 18 O -0.369 6.369 19 N -0.351 5.351 20 C -0.305 4.305 21 H 0.112 0.888 22 C -0.285 4.285 23 N -0.632 5.632 24 Si 0.789 3.211 25 H -0.225 1.225 26 H -0.237 1.237 27 H -0.199 1.199 28 C -0.002 4.002 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.107 0.893 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.053 0.947 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.040 0.960 49 H 0.086 0.914 50 H 0.221 0.779 51 H 0.194 0.806 52 H 0.046 0.954 53 H 0.122 0.878 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.809 18.478 0.609 19.702 hybrid contribution -0.363 -2.528 0.559 2.615 sum 6.446 15.950 1.169 17.243 Atomic orbital electron populations 1.21740 0.93223 1.01647 1.02724 1.21922 0.97304 0.88745 0.99073 1.61815 1.03891 1.11842 1.47260 1.22380 1.00226 0.94651 0.90933 1.21617 0.96385 0.93959 1.03091 1.21589 0.95090 1.00608 0.97860 1.21576 1.01076 0.90196 1.00901 1.21674 0.89196 0.97739 0.95112 0.92483 1.20859 0.80514 0.79783 0.88327 1.90638 1.61306 1.61984 1.30898 1.48063 1.16847 1.44825 1.23477 1.22082 0.96043 0.97049 0.86029 1.21740 1.00441 0.95578 0.98568 1.21762 0.97425 0.99066 0.96549 1.20391 0.88109 0.90049 0.93022 1.22621 0.97756 0.85565 0.94530 1.86803 1.81955 1.26076 1.42057 1.42535 1.03638 1.23762 1.65184 1.19775 0.93213 0.96275 1.21255 0.88838 1.25370 0.95688 1.02119 1.05290 1.69857 0.97582 1.41379 1.54346 0.85343 0.75878 0.81446 0.78442 1.22487 1.23670 1.19865 1.21604 0.99263 0.88769 0.90614 0.93139 0.90665 0.91678 0.93169 0.97630 0.89288 0.95306 0.91486 0.89081 0.88994 0.91272 0.89146 0.91715 0.89140 0.87705 0.94735 0.89277 0.93533 0.89920 0.95988 0.91354 0.77917 0.80644 0.95369 0.87767 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.40 71.98 0.68 -3.72 16 2 C 0.06 2.25 5.29 86.30 0.46 2.71 16 3 N -0.52 -16.71 4.36 -875.50 -3.82 -20.52 16 4 C 0.05 1.09 5.03 86.32 0.43 1.52 16 5 C -0.11 -1.99 6.09 30.64 0.19 -1.80 16 6 C -0.11 -1.80 6.00 30.67 0.18 -1.62 16 7 C -0.10 -2.11 5.19 30.65 0.16 -1.95 16 8 C 0.07 2.22 1.38 44.19 0.06 2.28 16 9 H 0.06 1.74 6.47 -2.39 -0.02 1.72 16 10 C 0.52 18.87 5.97 87.66 0.52 19.40 16 11 O -0.57 -25.70 14.35 -3.05 -0.04 -25.74 16 12 N -0.60 -19.22 2.88 -818.19 -2.36 -21.58 16 13 C 0.11 2.67 5.91 86.31 0.51 3.18 16 14 C -0.12 -3.77 5.93 30.67 0.18 -3.59 16 15 C -0.11 -3.46 4.43 30.62 0.14 -3.33 16 16 C 0.18 6.48 0.68 3.68 0.00 6.49 16 17 C 0.08 2.53 6.09 71.98 0.44 2.96 16 18 O -0.56 -20.62 9.91 -148.98 -1.48 -22.09 16 19 N -0.71 -35.52 4.22 -302.98 -1.28 -36.80 16 20 C -0.17 -9.52 8.14 84.03 0.68 -8.84 16 21 H 0.09 5.09 5.29 -2.91 -0.02 5.07 16 22 C -0.09 -5.64 5.50 84.86 0.47 -5.17 16 23 N -0.98 -62.47 13.06 21.65 0.28 -62.19 16 24 Si 0.96 48.97 29.55 68.60 2.03 51.00 16 25 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 26 H -0.31 -16.28 7.11 99.48 0.71 -15.57 16 27 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 28 C 0.12 4.03 5.12 86.36 0.44 4.47 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 2.00 6.19 -2.38 -0.01 1.99 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.42 5.98 -2.39 -0.01 2.41 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.09 2.02 5.84 -2.39 -0.01 2.00 16 35 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.09 1.53 7.42 -2.38 -0.02 1.51 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.98 5.12 -2.39 -0.01 1.97 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.03 1.42 7.53 -2.39 -0.02 1.40 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.05 1.75 6.98 -2.38 -0.02 1.73 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.77 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.37 9.91 9.12 -74.05 -0.68 9.24 16 51 H 0.36 20.84 7.65 -92.71 -0.71 20.13 16 52 H 0.24 15.09 8.31 -92.72 -0.77 14.32 16 53 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 54 H 0.06 2.37 7.04 -2.39 -0.02 2.36 16 Total: -1.00 -78.46 396.88 -1.60 -80.06 By element: Atomic # 1 Polarization: 45.35 SS G_CDS: -0.48 Total: 44.87 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 5.54 Total: 13.00 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -7.17 Total: -141.09 kcal Atomic # 8 Polarization: -46.32 SS G_CDS: -1.52 Total: -47.84 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -78.46 -1.60 -80.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327607771.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.810 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds