Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47430 * 2 1 4 4 C 1.50698 * 109.47181 * 120.00287 * 2 1 3 5 5 O 1.21277 * 120.00243 * 119.99163 * 4 2 1 6 6 N 1.34779 * 119.99934 * 299.99713 * 4 2 1 7 7 C 1.46500 * 120.00196 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.46967 * 325.00170 * 7 6 4 9 9 C 1.52997 * 109.47170 * 204.99986 * 7 6 4 10 10 N 1.46899 * 109.47254 * 54.99822 * 9 7 6 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.46800 * 180.02562 * 11 10 9 13 13 O 1.21289 * 120.00338 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99855 * 180.02562 * 12 11 10 15 15 C 1.37091 * 120.00193 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00238 * 359.97438 * 15 14 12 17 17 C 1.38951 * 120.00205 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00181 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47138 * 89.99534 * 19 17 15 21 21 H 1.48502 * 109.46886 * 209.99398 * 19 17 15 22 22 H 1.48495 * 109.47039 * 329.99454 * 19 17 15 23 23 C 1.52994 * 109.46849 * 84.99779 * 7 6 4 24 24 C 1.52999 * 117.50412 * 8.74867 * 23 7 6 25 25 C 1.53002 * 117.50104 * 300.08575 * 23 7 6 26 26 C 1.53004 * 109.46614 * 239.99930 * 2 1 3 27 27 C 1.52997 * 109.47308 * 300.00026 * 26 2 1 28 28 C 1.53000 * 109.47117 * 60.00456 * 26 2 1 29 29 C 1.53002 * 109.46865 * 180.02562 * 26 2 1 30 30 H 1.09000 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46737 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47205 * 59.99749 * 1 2 3 33 33 H 0.96998 * 119.99752 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47153 * 294.99818 * 9 7 6 35 35 H 1.09001 * 109.46832 * 175.00009 * 9 7 6 36 36 H 1.00902 * 111.00582 * 303.95797 * 10 9 7 37 37 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 38 38 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 39 39 H 0.97000 * 119.99567 * 0.02562 * 14 12 11 40 40 H 0.96998 * 120.00315 * 179.97438 * 18 17 15 41 41 H 1.09003 * 115.54830 * 154.41823 * 23 7 6 42 42 H 1.09003 * 117.49323 * 359.97438 * 24 23 7 43 43 H 1.09003 * 117.50071 * 145.01968 * 24 23 7 44 44 H 1.09000 * 117.50257 * 214.97832 * 25 23 7 45 45 H 1.09002 * 117.49965 * 359.97438 * 25 23 7 46 46 H 1.09001 * 109.47186 * 60.00193 * 27 26 2 47 47 H 1.09003 * 109.47436 * 180.02562 * 27 26 2 48 48 H 1.08998 * 109.47432 * 300.00633 * 27 26 2 49 49 H 1.09000 * 109.47286 * 59.99710 * 28 26 2 50 50 H 1.09003 * 109.46864 * 180.02562 * 28 26 2 51 51 H 1.09001 * 109.46899 * 299.99514 * 28 26 2 52 52 H 1.08998 * 109.47319 * 60.00096 * 29 26 2 53 53 H 1.08997 * 109.47122 * 180.02562 * 29 26 2 54 54 H 1.09000 * 109.47064 * 300.00000 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 2.1956 -0.9403 3.6507 8 1 2.2326 -2.0131 3.4614 9 6 1.2517 -0.6613 4.8220 10 7 -0.1181 -1.0373 4.4474 11 6 -1.0542 -0.7833 5.5507 12 6 -2.4457 -1.1809 5.1303 13 8 -2.6385 -1.6319 4.0211 14 7 -3.4759 -1.0352 5.9871 15 6 -4.7417 -1.3974 5.6049 16 1 -4.9135 -1.7990 4.6172 17 6 -5.8039 -1.2468 6.4880 18 7 -5.5950 -0.7576 7.6897 19 14 -7.5288 -1.7396 5.9670 20 1 -7.7636 -3.1636 6.3167 21 1 -8.5207 -0.8870 6.6702 22 1 -7.6731 -1.5598 4.5000 23 6 3.5980 -0.4343 3.9942 24 6 4.1234 0.7739 3.2164 25 6 4.6934 -0.6200 2.9422 26 6 2.0399 -0.7213 -1.2493 27 6 1.5299 -2.1638 -1.2493 28 6 1.5299 0.0000 -2.4985 29 6 3.5699 -0.7219 -1.2490 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1489 0.5384 2.5435 34 1 1.2825 0.3999 5.0688 35 1 1.5647 -1.2449 5.6878 36 1 -0.4083 -0.5573 3.6087 37 1 -0.7570 -1.3680 6.4212 38 1 -1.0394 0.2771 5.8027 39 1 -3.3217 -0.6742 6.8740 40 1 -6.3365 -0.6521 8.3060 41 1 3.8861 -0.5225 5.0417 42 1 3.4699 1.2081 2.4596 43 1 4.7574 1.4804 3.7521 44 1 5.7022 -0.8299 3.2976 45 1 4.4150 -1.1031 2.0056 46 1 0.4399 -2.1637 -1.2493 47 1 1.8935 -2.6778 -2.1391 48 1 1.8931 -2.6776 -0.3593 49 1 1.8933 1.0277 -2.4985 50 1 1.8928 -0.5141 -3.3885 51 1 0.4399 0.0000 -2.4985 52 1 3.9329 -1.2360 -0.3591 53 1 3.9332 -1.2353 -2.1392 54 1 3.9337 0.3056 -1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498782400.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = -76.412044 kcal Electronic energy + Delta-G solvation = -31073.183119 eV Core-core repulsion = 27044.626048 eV Total energy + Delta-G solvation = -4028.557071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.73076 -40.15876 -39.25044 -37.29344 -36.71959 -35.85334 -34.69403 -33.25828 -32.17140 -30.39138 -28.29844 -28.09264 -27.82983 -25.89347 -25.29473 -23.43724 -23.02773 -22.15469 -21.10998 -20.82956 -19.93106 -19.56855 -18.14857 -17.71379 -17.30985 -16.91917 -16.89092 -16.37506 -15.97694 -15.85915 -15.81061 -15.31769 -15.14886 -15.05030 -14.99111 -14.49260 -14.28515 -14.07039 -13.53269 -13.39228 -13.27220 -13.16570 -12.96981 -12.93233 -12.85506 -12.77781 -12.67677 -12.60204 -12.41329 -12.40086 -12.24432 -12.12924 -12.09854 -11.86922 -11.50323 -11.39586 -11.34072 -11.21509 -10.85707 -10.33812 -10.25549 -10.00745 -9.85196 -9.30893 -8.46475 -5.94807 1.37891 1.41935 1.54240 1.74060 2.06437 2.25079 2.29252 2.82354 3.03395 3.21242 3.49450 3.64904 3.79170 3.86356 3.89670 4.03089 4.12871 4.24037 4.29433 4.34107 4.38072 4.39230 4.47690 4.49334 4.53664 4.57872 4.64422 4.76299 4.83419 4.85175 4.86427 4.87268 4.93748 5.01183 5.04411 5.08020 5.11541 5.15738 5.26291 5.27169 5.29516 5.38735 5.41361 5.46713 5.57268 5.60981 5.77026 5.87349 6.09283 6.39601 6.60883 6.62132 7.13473 7.39685 7.57393 8.12875 8.70914 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.002587 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.108961 B =10819.174063 C =12507.742015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.115 0.885 4 C 0.520 3.480 5 O -0.551 6.551 6 N -0.715 5.715 7 C 0.186 3.814 8 H 0.068 0.932 9 C 0.060 3.940 10 N -0.684 5.684 11 C 0.065 3.935 12 C 0.437 3.563 13 O -0.622 6.622 14 N -0.573 5.573 15 C -0.332 4.332 16 H 0.078 0.922 17 C -0.012 4.012 18 N -0.920 5.920 19 Si 0.990 3.010 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.195 4.195 26 C -0.044 4.044 27 C -0.153 4.153 28 C -0.141 4.141 29 C -0.148 4.148 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.344 0.656 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.063 0.937 53 H 0.050 0.950 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.612 8.147 -10.872 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.133 0.867 4 C 0.308 3.692 5 O -0.430 6.430 6 N -0.367 5.367 7 C 0.080 3.920 8 H 0.086 0.914 9 C -0.069 4.069 10 N -0.317 5.317 11 C -0.067 4.067 12 C 0.224 3.776 13 O -0.509 6.509 14 N -0.211 5.211 15 C -0.462 4.462 16 H 0.096 0.904 17 C -0.212 4.212 18 N -0.561 5.561 19 Si 0.814 3.186 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.184 4.184 24 C -0.200 4.200 25 C -0.232 4.232 26 C -0.045 4.045 27 C -0.210 4.210 28 C -0.198 4.198 29 C -0.205 4.205 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.241 0.759 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.082 0.918 53 H 0.069 0.931 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.922 6.522 -11.347 23.837 hybrid contribution -1.246 0.856 0.484 1.587 sum 18.676 7.378 -10.863 22.831 Atomic orbital electron populations 1.21891 0.92720 1.02318 1.03565 1.21397 0.97390 1.00998 0.91912 0.86747 1.20920 0.79074 0.84092 0.85088 1.90518 1.38772 1.27202 1.86495 1.46015 1.53303 1.32014 1.05333 1.20316 0.90976 0.96752 0.83925 0.91405 1.22260 0.86753 1.00342 0.97515 1.59962 1.01440 1.64637 1.05691 1.21545 0.88751 1.00932 0.95493 1.20914 0.87547 0.83376 0.85714 1.90500 1.85766 1.51176 1.23445 1.41926 1.06579 1.56934 1.15615 1.19641 0.84687 1.41106 1.00760 0.90436 1.26006 1.03449 0.96712 0.95037 1.69665 1.34418 1.45297 1.06743 0.84963 0.76975 0.78342 0.78294 1.19857 1.19471 1.19713 1.22669 0.93582 1.03881 0.98263 1.22949 1.03277 0.90789 1.02995 1.23283 0.97856 1.00610 1.01450 1.20261 0.95817 0.94795 0.93591 1.22112 1.00177 0.96551 1.02187 1.21931 1.01377 1.00438 0.96050 1.22038 0.94348 1.01602 1.02479 0.93640 0.91923 0.89651 0.75915 0.92503 0.88666 0.83703 0.87782 0.91029 0.76951 0.91314 0.85857 0.88960 0.87908 0.88906 0.88420 0.93461 0.93004 0.92278 0.91454 0.92343 0.92084 0.91814 0.93055 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.38 71.98 0.60 -2.15 16 2 C -0.10 -1.69 2.10 -11.54 -0.02 -1.71 16 3 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.52 11.52 5.40 87.66 0.47 12.00 16 5 O -0.55 -15.42 8.38 -3.02 -0.03 -15.45 16 6 N -0.71 -13.89 2.79 -442.55 -1.23 -15.12 16 7 C 0.19 3.90 2.74 44.99 0.12 4.03 16 8 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 9 C 0.06 1.23 5.28 86.30 0.46 1.69 16 10 N -0.68 -20.10 6.12 -517.93 -3.17 -23.27 16 11 C 0.07 2.09 6.17 85.55 0.53 2.62 16 12 C 0.44 20.27 7.82 87.65 0.69 20.95 16 13 O -0.62 -33.99 15.78 -3.06 -0.05 -34.04 16 14 N -0.57 -28.88 5.29 -306.99 -1.62 -30.50 16 15 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 16 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 18 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 19 Si 0.99 42.69 29.55 68.60 2.03 44.71 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C -0.16 -2.87 5.70 -10.80 -0.06 -2.93 16 24 C -0.16 -2.55 9.74 30.62 0.30 -2.25 16 25 C -0.20 -3.80 9.82 30.62 0.30 -3.50 16 26 C -0.04 -0.81 0.54 -52.18 -0.03 -0.84 16 27 C -0.15 -3.54 7.82 71.98 0.56 -2.98 16 28 C -0.14 -2.03 8.12 71.98 0.58 -1.45 16 29 C -0.15 -2.78 8.18 71.98 0.59 -2.19 16 30 H 0.04 1.08 6.43 -2.39 -0.02 1.06 16 31 H 0.06 1.13 7.56 -2.39 -0.02 1.11 16 32 H 0.08 1.30 6.43 -2.39 -0.02 1.29 16 33 H 0.41 6.47 7.57 -92.71 -0.70 5.77 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.34 10.46 7.28 -89.69 -0.65 9.81 16 37 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 40 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 41 H 0.12 1.81 8.11 -2.39 -0.02 1.79 16 42 H 0.09 1.43 6.67 -2.39 -0.02 1.42 16 43 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 2.40 5.02 -2.39 -0.01 2.39 16 46 H 0.05 1.11 6.43 -2.39 -0.02 1.09 16 47 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 1.69 5.51 -2.39 -0.01 1.68 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 52 H 0.06 1.50 5.51 -2.39 -0.01 1.49 16 53 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.88 412.87 1.42 -67.46 By element: Atomic # 1 Polarization: 53.07 SS G_CDS: -1.16 Total: 51.91 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.37 Total: 3.18 kcal Atomic # 7 Polarization: -112.04 SS G_CDS: -5.74 Total: -117.78 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.07 Total: -49.49 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.88 1.42 -67.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498782400.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.956 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds