Wall clock time and date at job start Tue Mar 31 2020 22:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46999 * 2 1 4 4 C 1.50700 * 109.46737 * 240.00410 * 2 1 3 5 5 O 1.21287 * 119.99901 * 261.01358 * 4 2 1 6 6 N 1.34774 * 120.00175 * 81.01852 * 4 2 1 7 7 C 1.46506 * 119.99774 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.46788 * 179.97438 * 7 6 4 9 9 H 1.09008 * 109.70827 * 62.00332 * 8 7 6 10 10 C 1.53297 * 109.67940 * 182.53415 * 8 7 6 11 11 O 1.42964 * 109.26286 * 172.05222 * 10 8 7 12 12 C 1.42960 * 114.16934 * 297.39785 * 11 10 8 13 13 C 1.53301 * 109.22562 * 62.57680 * 12 11 10 14 14 N 1.47154 * 108.38395 * 307.70466 * 13 12 11 15 15 C 1.36936 * 120.97940 * 230.55239 * 14 13 12 16 16 H 1.08006 * 120.00128 * 147.18041 * 15 14 13 17 17 C 1.38811 * 120.00178 * 327.18063 * 15 14 13 18 18 N 1.31620 * 119.99787 * 356.19608 * 17 15 14 19 19 Si 1.86796 * 119.99968 * 176.19364 * 17 15 14 20 20 H 1.48503 * 109.47495 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47044 * 120.00284 * 19 17 15 22 22 H 1.48499 * 109.47490 * 239.99771 * 19 17 15 23 23 N 1.46900 * 109.47075 * 120.00360 * 2 1 3 24 24 C 1.47998 * 110.99798 * 314.48692 * 23 2 1 25 25 C 1.50452 * 112.82236 * 191.34828 * 24 23 2 26 26 C 1.54313 * 108.49925 * 93.72672 * 25 24 23 27 27 C 1.45872 * 112.18552 * 281.46196 * 26 25 24 28 28 C 1.54310 * 112.18478 * 61.12172 * 27 26 25 29 29 C 1.48001 * 110.99855 * 185.76607 * 23 2 1 30 30 H 1.08996 * 109.46981 * 305.10967 * 1 2 3 31 31 H 1.09001 * 109.47282 * 65.11631 * 1 2 3 32 32 H 1.09003 * 109.47124 * 185.11090 * 1 2 3 33 33 H 0.96993 * 120.00262 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47292 * 60.00229 * 7 6 4 35 35 H 1.08994 * 109.46992 * 299.99963 * 7 6 4 36 36 H 1.08998 * 109.51099 * 52.10454 * 10 8 7 37 37 H 1.09001 * 109.51548 * 291.99944 * 10 8 7 38 38 H 1.08993 * 109.51783 * 182.50639 * 12 11 10 39 39 H 1.09006 * 109.51169 * 302.65720 * 12 11 10 40 40 H 1.09004 * 109.67763 * 67.42053 * 13 12 11 41 41 H 1.08998 * 109.68367 * 187.97550 * 13 12 11 42 42 H 0.97002 * 119.99690 * 179.97438 * 18 17 15 43 43 H 1.09003 * 108.81330 * 312.20331 * 24 23 2 44 44 H 1.08993 * 108.81523 * 70.48851 * 24 23 2 45 45 H 1.08993 * 109.63438 * 334.02052 * 25 24 23 46 46 H 1.09000 * 109.63097 * 213.42872 * 25 24 23 47 47 H 1.08999 * 108.93924 * 160.76432 * 26 25 24 48 48 H 1.09003 * 108.93885 * 42.16063 * 26 25 24 49 49 H 1.09007 * 108.93891 * 300.42315 * 27 26 25 50 50 H 1.09004 * 108.93903 * 181.82152 * 27 26 25 51 51 H 1.09007 * 109.63291 * 161.76109 * 28 27 26 52 52 H 1.08995 * 109.79914 * 41.26592 * 28 27 26 53 53 H 1.08993 * 108.81020 * 205.70250 * 29 23 2 54 54 H 1.09003 * 108.80958 * 323.97439 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.3891 -1.8674 -1.1597 6 7 2.0851 -0.0599 -2.4098 7 6 2.5739 -0.7504 -3.6059 8 6 2.5308 0.2054 -4.7998 9 1 3.1888 1.0546 -4.6149 10 6 2.9815 -0.5305 -6.0668 11 8 2.7631 0.3093 -7.2030 12 6 1.3911 0.6401 -7.4313 13 6 0.8581 1.4366 -6.2348 14 7 1.1528 0.6818 -5.0064 15 6 0.1742 0.4293 -4.0825 16 1 0.1955 -0.4862 -3.5097 17 6 -0.8453 1.3498 -3.8819 18 7 -0.8309 2.4981 -4.5249 19 14 -2.2375 0.9586 -2.6995 20 1 -2.0214 -0.3861 -2.1076 21 1 -2.2689 1.9758 -1.6179 22 1 -3.5289 0.9756 -3.4324 23 7 2.0197 -0.6926 1.1994 24 6 1.2836 -0.2504 2.4048 25 6 1.9219 -0.7205 3.6835 26 6 2.8669 0.3870 4.1951 27 6 4.1352 0.4050 3.4748 28 6 3.9457 0.6789 1.9680 29 6 3.4926 -0.5933 1.3050 30 1 -0.3633 0.5910 0.8407 31 1 -0.3634 0.4324 -0.9323 32 1 -0.3633 -1.0236 0.0916 33 1 1.7995 0.8653 -2.4666 34 1 1.9422 -1.6149 -3.8101 35 1 3.5994 -1.0806 -3.4411 36 1 2.4066 -1.4499 -6.1778 37 1 4.0419 -0.7711 -5.9904 38 1 1.3074 1.2422 -8.3359 39 1 0.8104 -0.2751 -7.5472 40 1 1.3477 2.4096 -6.1941 41 1 -0.2191 1.5709 -6.3337 42 1 -1.5435 3.1412 -4.3850 43 1 1.2431 0.8389 2.4120 44 1 0.2659 -0.6375 2.3570 45 1 2.4919 -1.6302 3.4954 46 1 1.1499 -0.9159 4.4279 47 1 3.0639 0.2225 5.2544 48 1 2.3775 1.3535 4.0740 49 1 4.6269 -0.5598 3.5999 50 1 4.7716 1.1820 3.8983 51 1 4.8914 1.0020 1.5327 52 1 3.1932 1.4544 1.8255 53 1 3.8615 -1.4411 1.8820 54 1 3.9207 -0.6395 0.3036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501831663.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:04 Heat of formation + Delta-G solvation = -65.598209 kcal Electronic energy + Delta-G solvation = -32502.488004 eV Core-core repulsion = 28474.399856 eV Total energy + Delta-G solvation = -4028.088148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33752 -40.25658 -39.45831 -36.95746 -35.95297 -35.23880 -33.33748 -33.13915 -32.24492 -31.48754 -29.01317 -27.55936 -27.08787 -25.80047 -25.22303 -24.30359 -23.18310 -21.67424 -21.41018 -21.07026 -20.21328 -18.72962 -17.92845 -17.59346 -17.53888 -17.07987 -16.85053 -16.33916 -16.24379 -15.99904 -15.65392 -15.41062 -15.30220 -15.03904 -14.85543 -14.61212 -14.59574 -14.22270 -14.02092 -13.74679 -13.54096 -13.33602 -13.13578 -13.05513 -12.96761 -12.77738 -12.73434 -12.54711 -12.45697 -12.14321 -12.01785 -11.95371 -11.85753 -11.73874 -11.52133 -11.43446 -11.32459 -11.09528 -10.80860 -10.57779 -10.50532 -9.79419 -9.09679 -8.58853 -7.86178 -5.40076 1.37657 1.46007 1.52420 1.75370 2.20043 2.44250 2.91755 3.04464 3.30098 3.44430 3.72569 3.75713 3.84994 4.01162 4.04066 4.05318 4.14564 4.17011 4.21992 4.33891 4.35049 4.42780 4.47817 4.49503 4.57669 4.62161 4.64412 4.66497 4.68763 4.73953 4.77003 4.81704 4.87651 5.00793 5.01282 5.06932 5.12457 5.12939 5.22583 5.27421 5.32511 5.33080 5.39297 5.47530 5.60777 5.67899 5.70629 6.00731 6.23943 6.30078 6.39862 6.76377 7.12130 7.40926 7.76248 8.33367 9.17568 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.003714 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.106485 B = 7536.666416 C = 8852.959561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.065 0.935 4 C 0.512 3.488 5 O -0.571 6.571 6 N -0.698 5.698 7 C 0.145 3.855 8 C 0.127 3.873 9 H 0.037 0.963 10 C 0.057 3.943 11 O -0.398 6.398 12 C 0.045 3.955 13 C 0.149 3.851 14 N -0.607 5.607 15 C -0.237 4.237 16 H 0.069 0.931 17 C -0.029 4.029 18 N -0.927 5.927 19 Si 0.933 3.067 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.304 1.304 23 N -0.540 5.540 24 C 0.062 3.938 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.112 4.112 28 C -0.146 4.146 29 C 0.069 3.931 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.042 0.958 40 H 0.005 0.995 41 H 0.071 0.929 42 H 0.250 0.750 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.058 0.942 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.072 0.928 52 H 0.057 0.943 53 H 0.075 0.925 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.607 -2.191 12.382 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 H 0.083 0.917 4 C 0.298 3.702 5 O -0.451 6.451 6 N -0.350 5.350 7 C 0.020 3.980 8 C 0.021 3.979 9 H 0.055 0.945 10 C -0.021 4.021 11 O -0.316 6.316 12 C -0.033 4.033 13 C 0.023 3.977 14 N -0.333 5.333 15 C -0.367 4.367 16 H 0.086 0.914 17 C -0.226 4.226 18 N -0.573 5.573 19 Si 0.763 3.237 20 H -0.190 1.190 21 H -0.206 1.206 22 H -0.232 1.232 23 N -0.267 5.267 24 C -0.065 4.065 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.185 4.185 29 C -0.058 4.058 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.075 0.925 53 H 0.093 0.907 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.805 -3.289 12.288 14.924 hybrid contribution -1.367 1.284 0.263 1.893 sum 6.439 -2.006 12.551 14.248 Atomic orbital electron populations 1.21956 0.92459 1.02954 1.02882 1.21346 0.96621 0.95802 0.89329 0.91698 1.20727 0.77627 0.86877 0.84929 1.90610 1.50101 1.18126 1.86277 1.46120 1.64380 1.16958 1.07522 1.21063 0.98531 0.94555 0.83839 1.21559 0.87371 0.95199 0.93783 0.94507 1.22983 1.01990 0.92024 0.85135 1.87802 1.26570 1.70024 1.47225 1.23242 0.82074 0.98906 0.99077 1.21289 1.00148 0.91744 0.84509 1.44328 1.04089 1.64832 1.20071 1.19314 1.02819 1.00166 1.14426 0.91381 1.25652 1.01646 0.95157 1.00137 1.70068 1.33981 1.08225 1.45037 0.85803 0.79916 0.78334 0.79690 1.19031 1.20557 1.23181 1.61539 1.04954 1.58634 1.01539 1.21915 0.97749 0.98126 0.88675 1.21431 0.99584 0.99016 0.95418 1.20592 0.95943 0.98599 1.00416 1.20515 0.98250 1.02354 0.93858 1.21912 1.01634 0.97805 0.97181 1.21784 0.86187 0.97760 1.00089 0.89391 0.92996 0.92034 0.75309 0.93446 0.90439 0.93405 0.86517 0.87859 0.93989 0.97644 0.91060 0.94079 0.94406 0.90985 0.91480 0.89571 0.90625 0.92342 0.91783 0.91240 0.90932 0.92450 0.90655 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 8.25 71.98 0.59 -4.04 16 2 C 0.08 2.56 2.44 44.17 0.11 2.66 16 3 H 0.07 1.93 7.65 -2.39 -0.02 1.91 16 4 C 0.51 19.17 5.92 87.66 0.52 19.69 16 5 O -0.57 -24.50 15.87 -3.05 -0.05 -24.54 16 6 N -0.70 -26.20 3.72 -463.05 -1.72 -27.92 16 7 C 0.14 5.25 4.47 86.38 0.39 5.64 16 8 C 0.13 4.82 3.24 44.95 0.15 4.96 16 9 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 10 C 0.06 1.90 6.28 72.08 0.45 2.36 16 11 O -0.40 -14.66 10.74 -148.98 -1.60 -16.26 16 12 C 0.04 1.67 6.99 72.08 0.50 2.18 16 13 C 0.15 6.75 5.37 86.36 0.46 7.22 16 14 N -0.61 -27.62 3.04 -673.43 -2.05 -29.66 16 15 C -0.24 -11.54 6.87 84.03 0.58 -10.97 16 16 H 0.07 3.41 5.87 -2.91 -0.02 3.39 16 17 C -0.03 -1.49 5.20 84.86 0.44 -1.05 16 18 N -0.93 -49.91 10.88 21.65 0.24 -49.67 16 19 Si 0.93 41.61 26.72 68.60 1.83 43.45 16 20 H -0.27 -11.53 6.98 99.48 0.69 -10.83 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 23 N -0.54 -15.27 4.23 -879.39 -3.72 -18.99 16 24 C 0.06 1.37 3.79 85.27 0.32 1.70 16 25 C -0.12 -2.05 5.63 30.22 0.17 -1.88 16 26 C -0.12 -1.77 5.30 28.85 0.15 -1.62 16 27 C -0.11 -1.80 5.30 28.85 0.15 -1.64 16 28 C -0.15 -2.97 5.54 30.21 0.17 -2.80 16 29 C 0.07 1.78 4.76 85.26 0.41 2.19 16 30 H 0.09 2.31 6.82 -2.39 -0.02 2.30 16 31 H 0.05 1.90 4.66 -2.39 -0.01 1.89 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.41 16.24 7.13 -92.71 -0.66 15.58 16 34 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 35 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.07 3.63 6.22 -2.39 -0.01 3.61 16 42 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 43 H 0.04 0.81 6.40 -2.39 -0.02 0.80 16 44 H 0.07 1.62 7.01 -2.39 -0.02 1.61 16 45 H 0.07 1.33 7.08 -2.39 -0.02 1.31 16 46 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.90 7.52 -2.39 -0.02 0.88 16 49 H 0.06 1.01 7.52 -2.38 -0.02 1.00 16 50 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 52 H 0.06 1.24 6.62 -2.39 -0.02 1.23 16 53 H 0.08 1.89 6.59 -2.39 -0.02 1.88 16 54 H 0.05 1.38 6.47 -2.39 -0.02 1.37 16 Total: -1.00 -60.11 388.99 -1.29 -61.40 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.22 Total: 37.63 kcal Atomic # 6 Polarization: 19.01 SS G_CDS: 5.56 Total: 24.58 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -7.25 Total: -126.24 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -1.65 Total: -40.81 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.83 Total: 43.45 kcal Total: -60.11 -1.29 -61.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501831663.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.198 kcal (2) G-P(sol) polarization free energy of solvation -60.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds