Wall clock time and date at job start Tue Mar 31 2020 22:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46731 * 2 1 4 4 N 1.46502 * 109.47353 * 120.00133 * 2 1 3 5 5 C 1.34767 * 119.99845 * 275.00179 * 4 2 1 6 6 O 1.21293 * 120.00216 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00098 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47435 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46940 * 299.99550 * 7 5 4 10 10 C 1.52994 * 109.47093 * 59.99580 * 7 5 4 11 11 C 1.50699 * 109.47077 * 240.00295 * 2 1 3 12 12 O 1.21281 * 120.00179 * 240.00037 * 11 2 1 13 13 N 1.34781 * 120.00197 * 59.99365 * 11 2 1 14 14 C 1.46500 * 120.00158 * 179.97438 * 13 11 2 15 15 H 1.09004 * 109.50856 * 324.94775 * 14 13 11 16 16 C 1.52570 * 109.48990 * 204.88994 * 14 13 11 17 17 C 1.47092 * 114.32313 * 155.02163 * 16 14 13 18 18 C 1.54868 * 110.32290 * 62.79794 * 17 16 14 19 19 N 1.44568 * 109.60303 * 288.73387 * 18 17 16 20 20 C 1.36942 * 118.64431 * 270.70059 * 19 18 17 21 21 H 1.07998 * 119.99938 * 26.52709 * 20 19 18 22 22 C 1.38810 * 119.99969 * 206.52177 * 20 19 18 23 23 N 1.31615 * 120.00219 * 15.67268 * 22 20 19 24 24 Si 1.86806 * 119.99950 * 195.66995 * 22 20 19 25 25 H 1.48499 * 109.46956 * 60.00181 * 24 22 20 26 26 H 1.48490 * 109.47244 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47033 * 300.00726 * 24 22 20 28 28 C 1.47611 * 122.71597 * 90.72528 * 19 18 17 29 29 C 1.50873 * 109.48930 * 85.00276 * 14 13 11 30 30 H 1.08994 * 109.46934 * 299.99773 * 1 2 3 31 31 H 1.08996 * 109.47620 * 60.00305 * 1 2 3 32 32 H 1.09001 * 109.46731 * 180.02562 * 1 2 3 33 33 H 0.96993 * 119.99764 * 95.00256 * 4 2 1 34 34 H 1.09001 * 109.47432 * 59.99636 * 8 7 5 35 35 H 1.08993 * 109.47283 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.46843 * 299.99817 * 8 7 5 37 37 H 1.09001 * 109.46919 * 59.99821 * 9 7 5 38 38 H 1.08993 * 109.47330 * 180.02562 * 9 7 5 39 39 H 1.09006 * 109.47273 * 300.00646 * 9 7 5 40 40 H 1.09000 * 109.47125 * 60.00742 * 10 7 5 41 41 H 1.09003 * 109.46681 * 180.02562 * 10 7 5 42 42 H 1.08997 * 109.47145 * 299.99862 * 10 7 5 43 43 H 0.97001 * 119.99738 * 0.02562 * 13 11 2 44 44 H 1.09003 * 108.51195 * 33.76680 * 16 14 13 45 45 H 1.09002 * 108.50734 * 276.27489 * 16 14 13 46 46 H 1.08992 * 109.33088 * 302.53611 * 17 16 14 47 47 H 1.09001 * 109.32531 * 183.06152 * 17 16 14 48 48 H 1.08999 * 109.45085 * 168.69017 * 18 17 16 49 49 H 1.09001 * 109.44275 * 48.77568 * 18 17 16 50 50 H 0.97002 * 119.99715 * 179.97438 * 23 22 20 51 51 H 1.08995 * 108.94810 * 197.18086 * 28 19 18 52 52 H 1.08996 * 108.94582 * 78.55377 * 28 19 18 53 53 H 1.09005 * 109.36866 * 91.66128 * 29 14 13 54 54 H 1.09006 * 109.37185 * 332.04356 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3570 6 8 1.8590 1.1586 2.4115 7 6 2.6500 -0.7286 3.5874 8 6 2.7008 0.2543 4.7588 9 6 1.7065 -1.8828 3.9314 10 6 4.0527 -1.2785 3.3212 11 6 2.0323 -0.7103 -1.2305 12 8 2.7296 -1.6964 -1.1193 13 7 1.7066 -0.2499 -2.4546 14 6 2.1954 -0.9401 -3.6508 15 1 3.1953 -1.3313 -3.4624 16 6 2.2440 0.0394 -4.8196 17 6 3.2110 -0.3171 -5.8691 18 6 2.8263 -1.6696 -6.5180 19 7 3.0762 -2.7443 -5.5839 20 6 4.3117 -3.3349 -5.5779 21 1 5.1776 -2.7790 -5.9060 22 6 4.4512 -4.6481 -5.1501 23 7 3.3920 -5.4222 -5.0456 24 14 6.1425 -5.3165 -4.7229 25 1 6.7267 -4.5152 -3.6176 26 1 6.0214 -6.7339 -4.2969 27 1 7.0238 -5.2319 -5.9151 28 6 2.0545 -3.2317 -4.6365 29 6 1.2653 -2.0785 -3.9905 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.2491 -1.6317 1.1525 34 1 1.7013 0.6457 4.9483 35 1 3.0641 -0.2595 5.6487 36 1 3.3727 1.0770 4.5140 37 1 1.6698 -2.5832 3.0970 38 1 2.0699 -2.3963 4.8215 39 1 0.7071 -1.4910 4.1209 40 1 4.7249 -0.4562 3.0762 41 1 4.4162 -1.7926 4.2110 42 1 4.0161 -1.9789 2.4869 43 1 1.1492 0.5389 -2.5436 44 1 2.4999 1.0261 -4.4338 45 1 1.2516 0.0934 -5.2672 46 1 4.2057 -0.3972 -5.4309 47 1 3.2176 0.4606 -6.6328 48 1 3.4233 -1.8238 -7.4168 49 1 1.7690 -1.6573 -6.7828 50 1 3.4896 -6.3400 -4.7470 51 1 2.5453 -3.8078 -3.8522 52 1 1.3598 -3.8815 -5.1686 53 1 0.5034 -1.7274 -4.6866 54 1 0.7836 -2.4357 -3.0803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502130656.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:28 Heat of formation + Delta-G solvation = -91.211470 kcal Electronic energy + Delta-G solvation = -31523.991198 eV Core-core repulsion = 27494.792375 eV Total energy + Delta-G solvation = -4029.198823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74262 -40.79359 -39.26527 -36.74448 -36.41516 -36.03965 -34.54661 -32.78359 -32.49370 -31.12262 -28.27801 -28.05656 -27.83594 -26.22602 -25.35117 -25.06005 -23.50512 -21.68361 -21.30195 -20.93546 -20.59424 -18.56952 -18.41925 -17.86636 -17.20394 -17.04542 -16.69609 -16.33091 -16.10936 -15.95911 -15.58596 -15.37968 -14.86081 -14.82742 -14.74717 -14.55887 -14.33650 -14.01318 -13.79681 -13.58562 -13.42216 -13.28758 -13.19220 -13.11425 -13.00390 -12.88864 -12.72959 -12.68254 -12.65581 -12.52766 -12.14121 -12.01604 -11.93796 -11.89729 -11.74151 -11.51422 -11.39093 -11.34723 -10.94033 -10.75696 -10.42932 -10.25442 -10.08792 -8.63295 -7.85171 -5.30071 1.41337 1.45923 1.48314 1.50787 1.55433 1.80926 2.36492 2.50802 3.29199 3.47667 3.61157 3.71239 3.80157 3.83048 3.87851 3.98430 4.05402 4.10964 4.24847 4.39086 4.47133 4.49452 4.60900 4.66984 4.67684 4.71737 4.74863 4.79379 4.85132 4.90376 4.92678 4.94318 4.98708 5.01468 5.12347 5.17656 5.18377 5.22781 5.25503 5.26772 5.28099 5.35697 5.36274 5.51892 5.59045 5.63416 5.70402 5.79708 6.40149 6.42118 6.51885 7.10505 7.19924 7.22154 7.98194 8.35415 9.19530 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012138 B = 0.003126 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.161501 B = 8955.429703 C =10409.231913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.115 0.885 4 N -0.711 5.711 5 C 0.524 3.476 6 O -0.574 6.574 7 C -0.083 4.083 8 C -0.123 4.123 9 C -0.139 4.139 10 C -0.142 4.142 11 C 0.504 3.496 12 O -0.574 6.574 13 N -0.703 5.703 14 C 0.163 3.837 15 H 0.050 0.950 16 C -0.104 4.104 17 C -0.133 4.133 18 C 0.148 3.852 19 N -0.604 5.604 20 C -0.261 4.261 21 H 0.063 0.937 22 C -0.048 4.048 23 N -0.933 5.933 24 Si 0.956 3.044 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.271 1.271 28 C 0.195 3.805 29 C -0.130 4.130 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.416 0.584 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.088 0.912 48 H 0.037 0.963 49 H 0.049 0.951 50 H 0.247 0.753 51 H 0.029 0.971 52 H -0.004 1.004 53 H 0.075 0.925 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.536 13.883 14.436 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 H 0.133 0.867 4 N -0.363 5.363 5 C 0.312 3.688 6 O -0.453 6.453 7 C -0.086 4.086 8 C -0.181 4.181 9 C -0.196 4.196 10 C -0.199 4.199 11 C 0.290 3.710 12 O -0.453 6.453 13 N -0.355 5.355 14 C 0.059 3.941 15 H 0.069 0.931 16 C -0.142 4.142 17 C -0.173 4.173 18 C 0.021 3.979 19 N -0.326 5.326 20 C -0.392 4.392 21 H 0.080 0.920 22 C -0.244 4.244 23 N -0.580 5.580 24 Si 0.785 3.215 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.197 1.197 28 C 0.070 3.930 29 C -0.170 4.170 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.248 0.752 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.254 0.746 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.054 0.946 47 H 0.107 0.893 48 H 0.055 0.945 49 H 0.067 0.933 50 H 0.056 0.944 51 H 0.048 0.952 52 H 0.014 0.986 53 H 0.093 0.907 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.286 13.861 14.543 21.371 hybrid contribution 0.941 -1.101 -0.068 1.450 sum -6.345 12.760 14.475 20.312 Atomic orbital electron populations 1.22085 0.90800 1.03364 1.04569 1.20810 0.97061 0.97448 0.82575 0.86718 1.45899 1.66878 1.15011 1.08552 1.21141 0.76047 0.86725 0.84904 1.90654 1.51774 1.17218 1.85643 1.20866 0.97777 0.97514 0.92469 1.21649 1.02384 0.97831 0.96203 1.21887 0.98485 0.95996 1.03276 1.21897 0.93587 1.01015 1.03433 1.21006 0.79778 0.84375 0.85836 1.90773 1.39371 1.28090 1.87030 1.45978 1.52997 1.32012 1.04549 1.20195 0.97219 0.92345 0.84349 0.93121 1.20525 1.01376 0.97886 0.94409 1.21288 0.98513 0.98862 0.98646 1.20947 0.98349 0.87378 0.91211 1.43838 1.11139 1.38945 1.38703 1.19420 0.86613 0.93547 1.39630 0.91954 1.25690 0.99820 0.96310 1.02550 1.70197 1.29590 1.06275 1.51893 0.85511 0.80942 0.76741 0.78334 1.21437 1.21949 1.19674 1.20594 0.89275 0.92007 0.91150 1.22219 0.98212 0.96639 0.99896 0.90986 0.88490 0.92013 0.75243 0.92584 0.89611 0.93223 0.92170 0.89256 0.92002 0.92966 0.89055 0.92581 0.74640 0.90323 0.89988 0.94583 0.89310 0.94488 0.93277 0.94437 0.95215 0.98643 0.90689 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.38 71.98 0.68 -1.92 16 2 C 0.13 2.95 2.98 44.24 0.13 3.08 16 3 H 0.12 2.56 7.58 -2.39 -0.02 2.54 16 4 N -0.71 -16.94 4.74 -446.09 -2.11 -19.06 16 5 C 0.52 12.53 6.45 87.66 0.56 13.09 16 6 O -0.57 -16.81 15.65 -3.07 -0.05 -16.86 16 7 C -0.08 -1.48 0.87 -52.93 -0.05 -1.53 16 8 C -0.12 -2.01 7.76 71.98 0.56 -1.46 16 9 C -0.14 -1.95 8.37 71.98 0.60 -1.35 16 10 C -0.14 -2.42 8.37 71.98 0.60 -1.82 16 11 C 0.50 14.76 7.04 87.66 0.62 15.38 16 12 O -0.57 -22.98 15.50 -3.03 -0.05 -23.03 16 13 N -0.70 -17.70 4.83 -446.51 -2.15 -19.86 16 14 C 0.16 5.40 2.06 44.16 0.09 5.49 16 15 H 0.05 2.27 6.92 -2.38 -0.02 2.26 16 16 C -0.10 -2.72 4.69 28.61 0.13 -2.59 16 17 C -0.13 -4.11 5.74 29.40 0.17 -3.95 16 18 C 0.15 5.78 5.65 87.38 0.49 6.27 16 19 N -0.60 -30.06 2.27 -698.38 -1.59 -31.65 16 20 C -0.26 -14.70 9.44 84.03 0.79 -13.91 16 21 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 22 C -0.05 -2.81 4.87 84.86 0.41 -2.40 16 23 N -0.93 -57.12 11.01 21.65 0.24 -56.89 16 24 Si 0.96 47.26 29.58 68.60 2.03 49.28 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.20 9.70 4.67 86.49 0.40 10.11 16 29 C -0.13 -4.76 5.38 30.22 0.16 -4.60 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.18 7.56 -2.39 -0.02 1.16 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.41 10.11 6.63 -92.71 -0.61 9.49 16 34 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 37 H 0.06 0.89 7.56 -2.39 -0.02 0.87 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.07 7.56 -2.39 -0.02 1.05 16 43 H 0.42 6.82 8.02 -92.71 -0.74 6.07 16 44 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 45 H 0.08 1.78 7.36 -2.39 -0.02 1.76 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.04 1.49 7.99 -2.39 -0.02 1.47 16 49 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 50 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 51 H 0.03 1.74 6.33 -2.39 -0.02 1.72 16 52 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 53 H 0.07 2.34 7.32 -2.38 -0.02 2.32 16 54 H 0.05 1.93 7.84 -2.38 -0.02 1.91 16 Total: -1.00 -76.09 417.10 2.21 -73.88 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: -0.48 Total: 26.26 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 6.37 Total: 17.91 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -5.62 Total: -127.44 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.10 Total: -39.89 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -76.09 2.21 -73.88 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502130656.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.330 kcal (2) G-P(sol) polarization free energy of solvation -76.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds