Wall clock time and date at job start Tue Mar 31 2020 23:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47520 * 2 1 4 4 C 1.47014 * 110.99899 * 46.36712 * 3 2 1 5 5 C 1.53093 * 109.26080 * 182.39046 * 4 3 2 6 6 O 1.43020 * 109.29390 * 303.17551 * 5 4 3 7 7 C 1.43017 * 113.74048 * 58.59749 * 6 5 4 8 8 H 1.08999 * 109.50597 * 61.35161 * 7 6 5 9 9 C 1.50688 * 109.50723 * 181.44418 * 7 6 5 10 10 O 1.21279 * 120.00401 * 4.91344 * 9 7 6 11 11 N 1.34785 * 120.00129 * 184.91310 * 9 7 6 12 12 C 1.46935 * 120.62519 * 359.97438 * 11 9 7 13 13 C 1.53194 * 108.77313 * 126.39057 * 12 11 9 14 14 C 1.53047 * 109.31017 * 54.63443 * 13 12 11 15 15 C 1.53038 * 109.53663 * 298.63413 * 14 13 12 16 16 H 1.08998 * 109.49760 * 301.38118 * 15 14 13 17 17 C 1.53004 * 109.49477 * 181.31698 * 15 14 13 18 18 N 1.46502 * 109.46996 * 65.06401 * 17 15 14 19 19 C 1.46506 * 119.99800 * 89.99769 * 18 17 15 20 20 C 1.36935 * 120.00255 * 270.00073 * 18 17 15 21 21 H 1.07999 * 119.99477 * 334.66106 * 20 18 17 22 22 C 1.38818 * 120.00135 * 154.66398 * 20 18 17 23 23 N 1.31618 * 119.99903 * 3.92510 * 22 20 18 24 24 Si 1.86800 * 119.99547 * 183.92244 * 22 20 18 25 25 H 1.48493 * 109.47192 * 60.00281 * 24 22 20 26 26 H 1.48503 * 109.46739 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47316 * 299.99485 * 24 22 20 28 28 C 1.46931 * 120.60774 * 179.97438 * 11 9 7 29 29 C 1.47012 * 110.99930 * 170.00093 * 3 2 1 30 30 H 1.09003 * 109.46960 * 299.99655 * 1 2 3 31 31 H 1.09003 * 109.47225 * 59.99410 * 1 2 3 32 32 H 1.09000 * 109.47593 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46960 * 240.00345 * 2 1 3 34 34 H 1.09003 * 109.47225 * 120.00590 * 2 1 3 35 35 H 1.09000 * 109.50758 * 302.32608 * 4 3 2 36 36 H 1.09004 * 109.50528 * 62.41364 * 4 3 2 37 37 H 1.08999 * 109.50489 * 63.08720 * 5 4 3 38 38 H 1.09002 * 109.51289 * 183.17149 * 5 4 3 39 39 H 1.08997 * 109.58696 * 6.60445 * 12 11 9 40 40 H 1.08996 * 109.58425 * 246.17990 * 12 11 9 41 41 H 1.08998 * 109.49930 * 294.68344 * 13 12 11 42 42 H 1.08996 * 109.52015 * 174.59787 * 13 12 11 43 43 H 1.09003 * 109.45787 * 178.61400 * 14 13 12 44 44 H 1.08997 * 109.46005 * 58.65627 * 14 13 12 45 45 H 1.08994 * 109.47211 * 305.06926 * 17 15 14 46 46 H 1.08996 * 109.47006 * 185.06128 * 17 15 14 47 47 H 1.08997 * 109.47219 * 264.46626 * 19 18 17 48 48 H 1.09004 * 109.46981 * 144.46965 * 19 18 17 49 49 H 1.08992 * 109.47307 * 24.47265 * 19 18 17 50 50 H 0.96996 * 119.99876 * 180.02562 * 23 22 20 51 51 H 1.09003 * 109.55494 * 113.80822 * 28 11 9 52 52 H 1.08993 * 109.61430 * 353.38124 * 28 11 9 53 53 H 1.08996 * 109.50905 * 57.67488 * 29 3 2 54 54 H 1.08999 * 109.54559 * 297.56479 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.3024 2.1974 0.9934 5 6 1.8010 3.6429 0.9185 6 8 3.2167 3.6656 1.1208 7 6 3.9466 2.8843 0.1710 8 1 3.7760 3.2771 -0.8313 9 6 5.4175 2.9466 0.4924 10 8 5.7962 3.5213 1.4910 11 7 6.3123 2.3637 -0.3299 12 6 5.8688 1.6634 -1.5430 13 6 6.6276 2.2324 -2.7461 14 6 8.1327 2.1431 -2.4834 15 6 8.4874 2.9770 -1.2502 16 1 8.1882 4.0124 -1.4128 17 6 9.9968 2.9136 -1.0078 18 7 10.6977 3.5557 -2.1225 19 6 10.9972 4.9889 -2.0714 20 6 11.0730 2.8163 -3.2123 21 1 11.2389 1.7537 -3.1127 22 6 11.2404 3.4324 -4.4449 23 7 11.1140 4.7383 -4.5504 24 14 11.6450 2.4081 -5.9537 25 1 10.5588 1.4235 -6.1894 26 1 11.7727 3.2976 -7.1361 27 1 12.9260 1.6893 -5.7351 28 6 7.7497 2.4169 -0.0296 29 6 3.4696 1.4310 0.2383 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.2334 2.1697 0.7827 36 1 1.4873 1.7992 1.9911 37 1 1.5674 4.0581 -0.0618 38 1 1.3127 4.2369 1.6911 39 1 4.7983 1.8146 -1.6815 40 1 6.0802 0.5984 -1.4480 41 1 6.3454 3.2747 -2.8944 42 1 6.3793 1.6577 -3.6383 43 1 8.6755 2.5247 -3.3482 44 1 8.4101 1.1033 -2.3107 45 1 10.3094 1.8721 -0.9337 46 1 10.2378 3.4323 -0.0800 47 1 10.2173 5.5419 -2.5948 48 1 11.9587 5.1765 -2.5494 49 1 11.0384 5.3146 -1.0321 50 1 11.2306 5.1687 -5.4118 51 1 8.1141 1.4131 0.1890 52 1 7.9202 3.0651 0.8298 53 1 3.9825 0.8440 -0.5235 54 1 3.6904 1.0208 1.2237 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566746858.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:45 Heat of formation + Delta-G solvation = -60.291247 kcal Electronic energy + Delta-G solvation = -31629.181112 eV Core-core repulsion = 27601.323091 eV Total energy + Delta-G solvation = -4027.858021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81845 -40.26787 -38.84908 -37.35748 -37.05170 -34.62356 -33.13404 -32.81464 -31.78735 -31.61773 -28.54328 -27.92391 -27.19908 -26.29644 -25.21624 -23.89635 -23.45586 -22.60763 -21.39251 -21.00541 -20.18179 -18.70132 -18.41849 -17.81381 -17.28941 -16.90680 -16.79893 -16.38340 -16.23463 -15.83030 -15.61242 -15.50755 -15.26984 -15.09465 -14.95813 -14.82232 -14.57301 -14.22229 -14.10059 -13.85557 -13.70783 -13.25087 -13.06620 -12.91459 -12.82259 -12.74283 -12.70915 -12.56063 -12.35231 -12.25537 -12.06561 -11.93993 -11.87341 -11.83140 -11.80960 -11.65972 -11.46575 -11.12744 -10.80157 -10.73198 -10.50911 -9.68215 -9.48384 -8.69905 -7.76880 -5.23958 1.40042 1.49772 1.50747 1.57205 1.66438 2.54729 2.64461 2.84454 3.37318 3.43712 3.60790 3.71594 3.81395 3.88327 3.93819 4.00091 4.05475 4.09430 4.22526 4.27941 4.30693 4.40201 4.43656 4.45384 4.52181 4.55668 4.60015 4.66711 4.72936 4.74656 4.80426 4.86706 4.87103 4.88675 4.94418 5.00529 5.00694 5.11918 5.25207 5.30219 5.30945 5.41257 5.48758 5.61630 5.70235 5.76431 5.79532 5.81213 5.92461 5.98285 6.33739 6.40125 7.03660 7.22106 7.92377 8.39667 9.27257 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018643 B = 0.002628 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.515737 B =10652.013056 C =11460.173245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 N -0.537 5.537 4 C 0.013 3.987 5 C 0.055 3.945 6 O -0.390 6.390 7 C 0.085 3.915 8 H 0.103 0.897 9 C 0.515 3.485 10 O -0.573 6.573 11 N -0.600 5.600 12 C 0.103 3.897 13 C -0.129 4.129 14 C -0.103 4.103 15 C -0.103 4.103 16 H 0.030 0.970 17 C 0.156 3.844 18 N -0.618 5.618 19 C 0.183 3.817 20 C -0.241 4.241 21 H 0.074 0.926 22 C -0.052 4.052 23 N -0.942 5.942 24 Si 0.961 3.039 25 H -0.270 1.270 26 H -0.301 1.301 27 H -0.280 1.280 28 C 0.126 3.874 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.117 0.883 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.045 0.955 47 H -0.005 1.005 48 H 0.025 0.975 49 H 0.014 0.986 50 H 0.244 0.756 51 H 0.089 0.911 52 H 0.069 0.931 53 H 0.117 0.883 54 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.584 -11.765 8.049 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 N -0.263 5.263 4 C -0.115 4.115 5 C -0.022 4.022 6 O -0.309 6.309 7 C 0.023 3.977 8 H 0.120 0.880 9 C 0.302 3.698 10 O -0.452 6.452 11 N -0.332 5.332 12 C -0.018 4.018 13 C -0.167 4.167 14 C -0.140 4.140 15 C -0.125 4.125 16 H 0.048 0.952 17 C 0.029 3.971 18 N -0.341 5.341 19 C 0.038 3.962 20 C -0.371 4.371 21 H 0.092 0.908 22 C -0.246 4.246 23 N -0.590 5.590 24 Si 0.789 3.211 25 H -0.196 1.196 26 H -0.228 1.228 27 H -0.206 1.206 28 C 0.003 3.997 29 C -0.097 4.097 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.135 0.865 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.117 0.883 41 H 0.063 0.937 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.044 0.956 49 H 0.032 0.968 50 H 0.054 0.946 51 H 0.107 0.893 52 H 0.088 0.912 53 H 0.135 0.865 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -23.358 -11.072 8.132 27.098 hybrid contribution 0.739 -0.106 -0.390 0.842 sum -22.618 -11.178 7.742 26.391 Atomic orbital electron populations 1.21907 0.93510 1.02963 1.02625 1.22231 0.96973 0.87254 1.01546 1.62379 1.02266 1.12769 1.48895 1.22964 1.01057 0.93705 0.93794 1.23029 0.79070 0.96553 1.03509 1.88091 1.19828 1.69632 1.53360 1.21877 0.88069 0.93342 0.94388 0.87965 1.20606 0.88400 0.77944 0.82801 1.90675 1.81192 1.44499 1.28867 1.48159 1.06605 1.54009 1.24476 1.22236 1.00040 0.97308 0.82228 1.21901 0.95352 1.00988 0.98502 1.21392 0.95319 0.99359 0.97968 1.21945 0.97444 0.97984 0.95152 0.95156 1.20938 0.89531 0.97150 0.89465 1.44114 1.65236 1.05720 1.19021 1.20542 0.98117 0.83923 0.93666 1.19348 1.38496 0.92431 0.86780 0.90849 1.25841 1.01886 0.96686 1.00184 1.70274 1.56341 1.09000 1.23388 0.85434 0.78359 0.77912 0.79358 1.19588 1.22784 1.20594 1.21606 0.78612 1.02072 0.97431 1.22783 0.90440 0.94445 1.01998 0.92152 0.91587 0.90860 0.89284 0.94911 0.86467 0.94584 0.91234 0.86412 0.87438 0.88290 0.93746 0.88899 0.92898 0.91531 0.92359 0.93682 0.98628 0.95589 0.96769 0.94637 0.89268 0.91246 0.86505 0.94623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.18 71.98 0.66 -0.53 16 2 C 0.05 0.51 6.00 86.30 0.52 1.02 16 3 N -0.54 -7.84 4.88 -895.23 -4.37 -12.20 16 4 C 0.01 0.17 4.94 86.31 0.43 0.60 16 5 C 0.05 0.92 7.01 72.01 0.50 1.43 16 6 O -0.39 -10.52 10.01 -130.02 -1.30 -11.82 16 7 C 0.08 2.01 2.38 29.88 0.07 2.08 16 8 H 0.10 2.18 7.44 -2.39 -0.02 2.16 16 9 C 0.52 15.85 7.12 87.65 0.62 16.47 16 10 O -0.57 -23.11 15.92 15.94 0.25 -22.86 16 11 N -0.60 -16.21 2.97 -818.83 -2.43 -18.65 16 12 C 0.10 2.04 5.04 86.36 0.44 2.48 16 13 C -0.13 -3.36 6.08 30.67 0.19 -3.17 16 14 C -0.10 -3.49 4.77 30.62 0.15 -3.34 16 15 C -0.10 -3.72 2.55 -10.71 -0.03 -3.74 16 16 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 17 C 0.16 6.18 5.22 86.38 0.45 6.64 16 18 N -0.62 -30.70 2.81 -726.93 -2.04 -32.74 16 19 C 0.18 9.46 8.99 127.77 1.15 10.61 16 20 C -0.24 -12.63 7.58 84.04 0.64 -11.99 16 21 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 22 C -0.05 -2.84 5.38 84.86 0.46 -2.38 16 23 N -0.94 -55.56 10.13 21.65 0.22 -55.34 16 24 Si 0.96 43.92 29.56 68.60 2.03 45.95 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 27 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 28 C 0.13 3.79 5.72 86.37 0.49 4.29 16 29 C 0.03 0.57 4.48 86.32 0.39 0.95 16 30 H 0.06 0.45 6.28 -2.39 -0.01 0.43 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.03 0.38 8.08 -2.39 -0.02 0.36 16 35 H 0.12 1.08 6.05 -2.39 -0.01 1.06 16 36 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.65 4.62 -2.39 -0.01 1.64 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.05 2.33 6.26 -2.39 -0.01 2.31 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 46 H 0.04 1.70 7.86 -2.39 -0.02 1.69 16 47 H 0.00 -0.26 7.43 -2.39 -0.02 -0.28 16 48 H 0.03 1.44 7.04 -2.39 -0.02 1.43 16 49 H 0.01 0.64 7.83 -2.39 -0.02 0.62 16 50 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 52 H 0.07 2.37 7.00 -2.39 -0.02 2.36 16 53 H 0.12 1.60 5.45 -2.39 -0.01 1.59 16 54 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.26 401.36 0.34 -71.92 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.86 Total: 14.34 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 7.12 Total: 21.41 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -8.62 Total: -118.93 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.05 Total: -34.68 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.26 0.34 -71.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566746858.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.626 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds