Wall clock time and date at job start Tue Mar 31 2020 23:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46895 * 109.47470 * 2 1 4 4 C 1.47018 * 111.03532 * 46.33869 * 3 2 1 5 5 C 1.53099 * 109.29020 * 182.35136 * 4 3 2 6 6 O 1.43020 * 109.26049 * 303.17409 * 5 4 3 7 7 C 1.43014 * 113.73630 * 58.67158 * 6 5 4 8 8 C 1.47013 * 111.00254 * 170.00095 * 3 2 1 9 9 H 1.08996 * 109.50588 * 297.58940 * 8 3 2 10 10 C 1.50704 * 109.50766 * 57.67157 * 8 3 2 11 11 O 1.21285 * 119.99554 * 27.58321 * 10 8 3 12 12 N 1.34768 * 120.00152 * 207.58856 * 10 8 3 13 13 C 1.46923 * 120.63216 * 354.83423 * 12 10 8 14 14 C 1.53194 * 108.77789 * 233.58854 * 13 12 10 15 15 C 1.53037 * 109.31166 * 305.36383 * 14 13 12 16 16 C 1.53043 * 109.53673 * 61.36164 * 15 14 13 17 17 H 1.08994 * 109.49540 * 58.59116 * 16 15 14 18 18 C 1.52999 * 109.49363 * 178.65074 * 16 15 14 19 19 C 1.53004 * 109.47334 * 294.99815 * 18 16 15 20 20 N 1.46504 * 109.47028 * 179.97438 * 19 18 16 21 21 C 1.36940 * 119.99858 * 180.02562 * 20 19 18 22 22 H 1.08002 * 119.99486 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00109 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99805 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99906 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47145 * 60.00340 * 25 23 21 27 27 H 1.48500 * 109.46741 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47600 * 299.99965 * 25 23 21 29 29 C 1.46925 * 120.63090 * 174.81480 * 12 10 8 30 30 H 1.09002 * 109.46938 * 59.99781 * 1 2 3 31 31 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46706 * 300.00605 * 1 2 3 33 33 H 1.09002 * 109.46706 * 239.99395 * 2 1 3 34 34 H 1.09002 * 109.46938 * 120.00219 * 2 1 3 35 35 H 1.08996 * 109.46920 * 62.41682 * 4 3 2 36 36 H 1.08999 * 109.54501 * 302.32711 * 4 3 2 37 37 H 1.09006 * 109.50764 * 183.24058 * 5 4 3 38 38 H 1.09003 * 109.54226 * 63.13689 * 5 4 3 39 39 H 1.09000 * 109.50753 * 181.39525 * 7 6 5 40 40 H 1.09007 * 109.53984 * 61.28488 * 7 6 5 41 41 H 1.09006 * 109.58679 * 353.37635 * 13 12 10 42 42 H 1.09000 * 109.59072 * 113.65864 * 13 12 10 43 43 H 1.09002 * 109.49786 * 185.40722 * 14 13 12 44 44 H 1.09003 * 109.49377 * 65.31171 * 14 13 12 45 45 H 1.08999 * 109.45912 * 301.34640 * 15 14 13 46 46 H 1.09002 * 109.46082 * 181.38593 * 15 14 13 47 47 H 1.09001 * 109.47647 * 55.00426 * 18 16 15 48 48 H 1.09008 * 109.46924 * 175.00316 * 18 16 15 49 49 H 1.08999 * 109.47368 * 300.00078 * 19 18 16 50 50 H 1.08998 * 109.46732 * 60.00364 * 19 18 16 51 51 H 0.96994 * 120.00116 * 0.02562 * 20 19 18 52 52 H 0.96993 * 119.99830 * 180.02562 * 24 23 21 53 53 H 1.08993 * 109.59148 * 6.62221 * 29 12 10 54 54 H 1.09003 * 109.70420 * 246.26713 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.3026 2.1983 0.9927 5 6 1.8020 3.6436 0.9184 6 8 3.2175 3.6647 1.1219 7 6 3.9474 2.8840 0.1716 8 6 3.4697 1.4311 0.2383 9 1 3.6899 1.0204 1.2237 10 6 4.1789 0.6194 -0.8150 11 8 3.6791 0.4792 -1.9111 12 7 5.3685 0.0492 -0.5388 13 6 6.0400 0.3018 0.7433 14 6 7.4641 0.7935 0.4655 15 6 8.1824 -0.2169 -0.4319 16 6 7.4424 -0.3327 -1.7665 17 1 7.4024 0.6451 -2.2463 18 6 8.1801 -1.3178 -2.6755 19 6 9.5591 -0.7546 -3.0252 20 7 10.2657 -1.6981 -3.8951 21 6 11.5276 -1.4063 -4.3398 22 1 12.0020 -0.4807 -4.0488 23 6 12.1969 -2.3000 -5.1645 24 7 11.6188 -3.4282 -5.5186 25 14 13.9179 -1.9015 -5.7716 26 1 14.8271 -1.7363 -4.6090 27 1 14.4090 -3.0095 -6.6297 28 1 13.8863 -0.6424 -6.5581 29 6 6.0181 -0.8371 -1.5141 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.4873 1.8002 1.9904 36 1 0.2334 2.1714 0.7823 37 1 1.3143 4.2375 1.6914 38 1 1.5689 4.0600 -0.0617 39 1 5.0113 2.9285 0.4045 40 1 3.7774 3.2774 -0.8308 41 1 5.4925 1.0632 1.2989 42 1 6.0762 -0.6195 1.3246 43 1 8.0047 0.8929 1.4068 44 1 7.4238 1.7607 -0.0354 45 1 8.2004 -1.1900 0.0589 46 1 9.2040 0.1183 -0.6109 47 1 8.2970 -2.2708 -2.1596 48 1 7.6063 -1.4678 -3.5901 49 1 9.4422 0.1984 -3.5412 50 1 10.1328 -0.6046 -2.1106 51 1 9.8397 -2.5295 -4.1561 52 1 12.0867 -4.0529 -6.0946 53 1 5.4562 -0.8273 -2.4479 54 1 6.0547 -1.8528 -1.1203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666125738.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:41 Heat of formation + Delta-G solvation = -86.707668 kcal Electronic energy + Delta-G solvation = -30910.354088 eV Core-core repulsion = 26881.350565 eV Total energy + Delta-G solvation = -4029.003523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.93307 -40.26036 -38.83403 -37.21485 -36.90047 -35.12163 -33.35356 -32.92428 -32.26010 -31.67490 -29.24256 -27.82705 -26.86619 -26.01698 -25.21666 -23.59167 -23.22382 -22.88171 -21.76192 -21.07909 -19.91225 -19.14835 -18.49395 -17.81374 -17.47711 -16.84518 -16.66145 -16.31968 -16.15732 -16.02456 -15.80959 -15.54937 -15.39536 -15.32023 -15.15676 -14.96037 -14.68221 -14.29446 -14.15919 -14.01572 -13.90018 -13.33537 -13.23270 -12.98007 -12.85500 -12.84711 -12.62477 -12.47366 -12.42893 -12.40683 -12.15839 -12.00898 -11.95703 -11.82403 -11.69814 -11.61844 -11.53839 -11.27761 -11.02354 -10.90814 -10.60331 -9.69091 -9.41802 -9.01366 -7.96561 -5.26122 1.41454 1.45914 1.49757 1.55921 1.77084 2.55154 2.60420 2.82491 3.36287 3.37281 3.63259 3.68187 3.76462 3.81221 3.87634 3.90889 4.03138 4.04352 4.11111 4.16607 4.27730 4.33262 4.34283 4.39164 4.46977 4.48044 4.53508 4.55777 4.62424 4.64018 4.72055 4.75891 4.81494 4.83916 4.87438 4.91045 4.93001 5.00444 5.06617 5.13422 5.21582 5.23344 5.32068 5.43614 5.44601 5.48155 5.52288 5.75397 5.90781 5.99762 6.25871 6.33580 7.07311 7.31327 8.07973 8.30956 9.26987 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.002015 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.872385 B =13890.621703 C =14425.350656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.016 3.984 5 C 0.054 3.946 6 O -0.386 6.386 7 C 0.079 3.921 8 C 0.040 3.960 9 H 0.089 0.911 10 C 0.518 3.482 11 O -0.563 6.563 12 N -0.606 5.606 13 C 0.099 3.901 14 C -0.128 4.128 15 C -0.117 4.117 16 C -0.083 4.083 17 H 0.062 0.938 18 C -0.107 4.107 19 C 0.155 3.845 20 N -0.750 5.750 21 C -0.249 4.249 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.977 3.023 26 H -0.275 1.275 27 H -0.294 1.294 28 H -0.278 1.278 29 C 0.122 3.878 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.056 0.944 39 H 0.119 0.881 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.051 0.949 49 H 0.010 0.990 50 H 0.031 0.969 51 H 0.373 0.627 52 H 0.252 0.748 53 H 0.068 0.932 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 12.473 22.548 34.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.079 4.079 3 N -0.262 5.262 4 C -0.111 4.111 5 C -0.022 4.022 6 O -0.304 6.304 7 C 0.001 3.999 8 C -0.072 4.072 9 H 0.106 0.894 10 C 0.306 3.694 11 O -0.441 6.441 12 N -0.340 5.340 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.154 4.154 16 C -0.103 4.103 17 H 0.081 0.919 18 C -0.146 4.146 19 C 0.028 3.972 20 N -0.393 5.393 21 C -0.380 4.380 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.805 3.195 26 H -0.201 1.201 27 H -0.220 1.220 28 H -0.204 1.204 29 C -0.001 4.001 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.146 0.854 38 H 0.074 0.926 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.028 0.972 50 H 0.048 0.952 51 H 0.204 0.796 52 H 0.061 0.939 53 H 0.086 0.914 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.474 12.817 21.660 34.416 hybrid contribution 0.982 -1.087 -0.656 1.605 sum -22.491 11.730 21.004 32.934 Atomic orbital electron populations 1.21860 0.92872 1.02862 1.02790 1.22155 0.97527 0.88008 1.00247 1.61990 1.01409 1.12565 1.50286 1.23017 1.00646 0.93839 0.93574 1.22963 0.80393 0.95682 1.03155 1.88012 1.19445 1.69441 1.53493 1.22536 0.97249 0.86590 0.93493 1.22322 0.90047 0.97880 0.96974 0.89382 1.20634 0.80992 0.79343 0.88479 1.90698 1.66611 1.61480 1.25262 1.48241 1.19702 1.47161 1.18847 1.22119 0.93623 1.02894 0.83594 1.21911 0.94791 0.98645 1.01239 1.21634 0.99164 1.00475 0.94137 1.21287 0.93781 0.98564 0.96631 0.91924 1.21555 0.94922 0.99026 0.99072 1.20819 0.91897 0.91855 0.92585 1.42638 1.16014 1.22090 1.58513 1.19622 0.92722 1.02654 1.23043 0.90658 1.25646 1.02970 0.96945 1.01538 1.69819 1.39458 1.11416 1.41436 0.85160 0.79588 0.76761 0.77947 1.20064 1.22028 1.20433 1.21529 0.92379 0.93193 0.92961 0.92435 0.91205 0.90620 0.92504 0.94419 0.92929 0.87048 0.85445 0.92608 0.86290 0.93158 0.87933 0.89443 0.87961 0.91675 0.91019 0.91733 0.91519 0.93062 0.97199 0.95163 0.79564 0.93938 0.91360 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.18 71.98 0.66 -1.19 16 2 C 0.05 0.85 5.37 86.31 0.46 1.31 16 3 N -0.54 -9.68 4.42 -874.39 -3.86 -13.55 16 4 C 0.02 0.19 4.94 86.31 0.43 0.62 16 5 C 0.05 0.64 7.01 72.02 0.50 1.14 16 6 O -0.39 -6.16 10.83 -148.98 -1.61 -7.78 16 7 C 0.08 1.31 6.10 72.01 0.44 1.75 16 8 C 0.04 0.70 1.48 44.18 0.07 0.76 16 9 H 0.09 1.22 6.60 -2.39 -0.02 1.20 16 10 C 0.52 12.24 5.99 87.66 0.53 12.76 16 11 O -0.56 -18.48 14.74 -3.05 -0.04 -18.52 16 12 N -0.61 -12.20 2.97 -818.93 -2.43 -14.64 16 13 C 0.10 1.25 6.09 86.36 0.53 1.78 16 14 C -0.13 -1.75 6.08 30.67 0.19 -1.57 16 15 C -0.12 -2.35 4.95 30.62 0.15 -2.20 16 16 C -0.08 -2.08 2.34 -10.72 -0.03 -2.11 16 17 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.11 -3.48 4.80 30.60 0.15 -3.34 16 19 C 0.15 6.31 6.02 86.38 0.52 6.83 16 20 N -0.75 -39.67 5.60 -343.43 -1.92 -41.59 16 21 C -0.25 -14.32 9.99 84.03 0.84 -13.49 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 24 N -0.97 -60.80 13.06 21.65 0.28 -60.51 16 25 Si 0.98 46.88 29.55 68.60 2.03 48.91 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 29 C 0.12 2.92 5.73 86.36 0.49 3.41 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.07 0.66 6.28 -2.39 -0.01 0.64 16 33 H 0.06 1.38 6.53 -2.39 -0.02 1.37 16 34 H 0.04 0.59 8.08 -2.39 -0.02 0.58 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.98 6.06 -2.39 -0.01 0.96 16 37 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 1.54 7.35 -2.39 -0.02 1.52 16 40 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.10 0.91 4.90 -2.38 -0.01 0.90 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.06 1.48 6.50 -2.39 -0.02 1.46 16 47 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.03 1.19 6.54 -2.39 -0.02 1.18 16 51 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 52 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 53 H 0.07 2.00 7.00 -2.39 -0.02 1.98 16 54 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -74.80 405.85 -1.01 -75.81 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.17 Total: 29.55 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.39 Total: 2.31 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -7.94 Total: -130.29 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.66 Total: -26.30 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -74.80 -1.01 -75.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666125738.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.897 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds