Wall clock time and date at job start Tue Mar 31 2020 23:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46929 * 2 1 4 4 N 1.46498 * 109.47228 * 239.99692 * 2 1 3 5 5 C 1.34771 * 119.99911 * 85.00157 * 4 2 1 6 6 O 1.21284 * 120.00414 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99986 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47107 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47262 * 60.00191 * 8 7 5 10 10 C 1.52999 * 109.47032 * 179.97438 * 8 7 5 11 11 C 1.53004 * 109.46962 * 300.00113 * 8 7 5 12 12 C 1.50698 * 109.46968 * 119.99417 * 2 1 3 13 13 O 1.21287 * 120.00157 * 119.99954 * 12 2 1 14 14 N 1.34779 * 120.00446 * 300.00567 * 12 2 1 15 15 C 1.46498 * 120.00511 * 179.97438 * 14 12 2 16 16 H 1.09003 * 112.90656 * 336.25089 * 15 14 12 17 17 C 1.53781 * 113.61400 * 107.50105 * 15 14 12 18 18 C 1.53778 * 87.08330 * 89.11744 * 17 15 14 19 19 H 1.08995 * 113.69315 * 270.87600 * 18 17 15 20 20 C 1.52999 * 113.61377 * 139.97641 * 18 17 15 21 21 N 1.46506 * 109.46684 * 87.50778 * 20 18 17 22 22 C 1.36938 * 119.99589 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 20 24 24 C 1.38815 * 119.99408 * 179.97438 * 22 21 20 25 25 N 1.31619 * 119.99480 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00486 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47176 * 89.99661 * 26 24 22 28 28 H 1.48498 * 109.47481 * 209.99740 * 26 24 22 29 29 H 1.48501 * 109.46931 * 329.99788 * 26 24 22 30 30 C 1.53774 * 113.61723 * 204.99796 * 15 14 12 31 31 H 1.08997 * 109.46929 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47657 * 300.00362 * 1 2 3 33 33 H 1.09001 * 109.46713 * 60.00664 * 1 2 3 34 34 H 0.96999 * 119.99774 * 264.99208 * 4 2 1 35 35 H 1.09001 * 109.47238 * 300.00177 * 7 5 4 36 36 H 1.08993 * 109.46942 * 60.00079 * 7 5 4 37 37 H 1.09001 * 109.47079 * 59.99916 * 9 8 7 38 38 H 1.09003 * 109.47049 * 180.02562 * 9 8 7 39 39 H 1.09003 * 109.47288 * 300.00012 * 9 8 7 40 40 H 1.09003 * 109.46927 * 59.99956 * 10 8 7 41 41 H 1.09003 * 109.47113 * 179.97438 * 10 8 7 42 42 H 1.09001 * 109.47345 * 300.00105 * 10 8 7 43 43 H 1.08996 * 109.47325 * 60.00583 * 11 8 7 44 44 H 1.09001 * 109.46601 * 180.02562 * 11 8 7 45 45 H 1.09003 * 109.47102 * 300.00108 * 11 8 7 46 46 H 0.97005 * 119.99390 * 359.97438 * 14 12 2 47 47 H 1.09003 * 113.61633 * 334.56488 * 17 15 14 48 48 H 1.09008 * 113.61285 * 203.66985 * 17 15 14 49 49 H 1.09000 * 109.47486 * 327.50713 * 20 18 17 50 50 H 1.09001 * 109.47362 * 207.49990 * 20 18 17 51 51 H 0.96995 * 120.00050 * 359.72237 * 21 20 18 52 52 H 0.97000 * 120.00111 * 179.97438 * 25 24 22 53 53 H 1.08999 * 113.61743 * 156.33348 * 30 15 14 54 54 H 1.09004 * 113.68986 * 25.44052 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3570 6 8 1.8592 1.1585 -2.4115 7 6 2.6501 -0.7287 -3.5874 8 6 2.7021 0.2545 -4.7585 9 6 3.6460 1.4083 -4.4142 10 6 3.2132 -0.4665 -6.0074 11 6 1.2995 0.8050 -5.0248 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6964 1.1194 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9406 3.6509 16 1 2.4387 -1.9869 3.4667 17 6 3.2974 -0.1731 4.3988 18 6 2.1727 0.5153 5.1900 19 1 1.8029 1.4275 4.7219 20 6 2.4907 0.6964 6.6756 21 7 3.2084 1.9586 6.8709 22 6 3.6003 2.3359 8.1275 23 1 3.3800 1.7033 8.9747 24 6 4.2809 3.5316 8.3125 25 7 4.6571 3.8945 9.5204 26 14 4.6614 4.6261 6.8474 27 1 3.5437 5.5816 6.6399 28 1 5.9151 5.3792 7.1044 29 1 4.8277 3.7876 5.6331 30 6 1.3115 -0.7232 4.8909 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 2.2492 -1.6318 -1.1524 35 1 3.6494 -1.1205 -3.3977 36 1 1.9779 -1.5510 -3.8324 37 1 4.6451 1.0161 -4.2244 38 1 3.6826 2.1090 -5.2484 39 1 3.2823 1.9222 -3.5243 40 1 2.5411 -1.2888 -6.2528 41 1 3.2499 0.2338 -6.8418 42 1 4.2125 -0.8584 -5.8173 43 1 0.9359 1.3188 -4.1350 44 1 1.3366 1.5051 -5.8595 45 1 0.6271 -0.0171 -5.2701 46 1 1.1492 0.5391 2.5435 47 1 3.8637 0.5075 3.7630 48 1 3.9349 -0.8109 5.0111 49 1 3.1117 -0.1314 7.0178 50 1 1.5622 0.7144 7.2463 51 1 3.4098 2.5248 6.1095 52 1 5.1330 4.7298 9.6497 53 1 1.4060 -1.5114 5.6379 54 1 0.2742 -0.4868 4.6540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675818262.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:37 Heat of formation + Delta-G solvation = -79.086452 kcal Electronic energy + Delta-G solvation = -29702.033862 eV Core-core repulsion = 25673.360820 eV Total energy + Delta-G solvation = -4028.673042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.74794 -40.96668 -39.63945 -37.62294 -36.50968 -35.87116 -34.60353 -33.26649 -31.94286 -29.05019 -28.72560 -28.08764 -28.00996 -26.63591 -25.85085 -24.66398 -22.98939 -22.15179 -21.34940 -20.51625 -19.99285 -19.48737 -18.70335 -17.60990 -17.36981 -16.76680 -16.66625 -16.37425 -16.09596 -15.96450 -15.66041 -15.33319 -15.23099 -15.17880 -15.06302 -14.66307 -14.49660 -13.99703 -13.92308 -13.66284 -13.51054 -13.37932 -13.35350 -13.01696 -13.00968 -12.91726 -12.74630 -12.66603 -12.64716 -12.20173 -12.18789 -12.01472 -11.88655 -11.71932 -11.62665 -11.52478 -11.41845 -11.19969 -11.01497 -10.89786 -10.49190 -10.18123 -10.06962 -9.28105 -8.04018 -5.36639 1.35857 1.39400 1.41612 1.46769 1.60966 1.79840 2.37968 2.46867 3.26859 3.46587 3.49070 3.57889 3.71783 3.85125 3.86033 3.92177 3.94764 4.02419 4.10663 4.10967 4.30020 4.53159 4.59063 4.62779 4.65726 4.69109 4.72217 4.78522 4.85498 4.85669 4.87642 4.87904 4.90442 4.99259 5.00079 5.10488 5.12076 5.16312 5.18495 5.20231 5.25347 5.32017 5.36590 5.40320 5.54285 5.63458 5.68114 5.75799 6.20571 6.41084 6.50772 7.06856 7.07828 7.25749 7.85502 8.03769 9.17661 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014863 B = 0.001997 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.462207 B =14017.368661 C =15220.447788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.128 3.872 3 H 0.108 0.892 4 N -0.713 5.713 5 C 0.514 3.486 6 O -0.558 6.558 7 C -0.129 4.129 8 C -0.052 4.052 9 C -0.153 4.153 10 C -0.139 4.139 11 C -0.150 4.150 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.694 5.694 15 C 0.127 3.873 16 H 0.098 0.902 17 C -0.147 4.147 18 C -0.117 4.117 19 H 0.095 0.905 20 C 0.161 3.839 21 N -0.758 5.758 22 C -0.236 4.236 23 H 0.056 0.944 24 C -0.067 4.067 25 N -0.984 5.984 26 Si 0.957 3.043 27 H -0.276 1.276 28 H -0.297 1.297 29 H -0.254 1.254 30 C -0.116 4.116 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.416 0.584 47 H 0.055 0.945 48 H 0.086 0.914 49 H 0.023 0.977 50 H 0.027 0.973 51 H 0.365 0.635 52 H 0.258 0.742 53 H 0.104 0.896 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -13.739 -32.827 37.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 H 0.126 0.874 4 N -0.367 5.367 5 C 0.303 3.697 6 O -0.437 6.437 7 C -0.168 4.168 8 C -0.053 4.053 9 C -0.210 4.210 10 C -0.196 4.196 11 C -0.207 4.207 12 C 0.303 3.697 13 O -0.448 6.448 14 N -0.345 5.345 15 C 0.022 3.978 16 H 0.116 0.884 17 C -0.186 4.186 18 C -0.135 4.135 19 H 0.113 0.887 20 C 0.035 3.965 21 N -0.404 5.404 22 C -0.367 4.367 23 H 0.074 0.926 24 C -0.258 4.258 25 N -0.635 5.635 26 Si 0.784 3.216 27 H -0.202 1.202 28 H -0.224 1.224 29 H -0.178 1.178 30 C -0.154 4.154 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.253 0.747 47 H 0.074 0.926 48 H 0.104 0.896 49 H 0.041 0.959 50 H 0.045 0.955 51 H 0.198 0.802 52 H 0.066 0.934 53 H 0.123 0.877 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.293 -13.655 -32.711 36.911 hybrid contribution 0.660 1.055 0.161 1.255 sum -9.633 -12.599 -32.550 36.208 Atomic orbital electron populations 1.22088 0.91019 1.03591 1.04280 1.20739 0.96912 0.97486 0.82979 0.87413 1.45879 1.67439 1.15039 1.08346 1.21188 0.76491 0.87091 0.84928 1.90599 1.50923 1.17208 1.85002 1.21840 1.04264 0.99567 0.91159 1.20296 0.96174 0.94626 0.94196 1.22079 0.98457 0.98329 1.02151 1.21861 1.01390 1.00321 0.96010 1.22048 0.95671 1.00937 1.02031 1.20843 0.79378 0.84129 0.85386 1.90691 1.39199 1.27909 1.87012 1.45550 1.52707 1.31942 1.04304 1.21771 0.95252 0.96767 0.84051 0.88381 1.23480 0.96954 0.99534 0.98631 1.22787 0.97728 0.98840 0.94192 0.88680 1.20833 0.94112 0.86629 0.94888 1.42739 1.69490 1.23493 1.04635 1.19086 1.28590 1.02826 0.86165 0.92637 1.25538 1.01231 0.99836 0.99182 1.69890 1.46292 1.24895 1.22433 0.85374 0.77264 0.78985 0.79934 1.20161 1.22427 1.17838 1.23217 0.99081 0.97259 0.95874 0.91258 0.89171 0.91347 0.74886 0.87533 0.86602 0.93136 0.93046 0.92166 0.91521 0.92455 0.92047 0.91963 0.93189 0.92469 0.74711 0.92642 0.89552 0.95927 0.95518 0.80198 0.93371 0.87717 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.38 71.98 0.68 -0.99 16 2 C 0.13 1.95 2.98 44.25 0.13 2.08 16 3 H 0.11 1.85 7.58 -2.39 -0.02 1.83 16 4 N -0.71 -10.65 4.95 -446.10 -2.21 -12.85 16 5 C 0.51 8.36 7.21 87.66 0.63 8.99 16 6 O -0.56 -12.38 11.01 -3.04 -0.03 -12.41 16 7 C -0.13 -1.37 4.77 29.85 0.14 -1.23 16 8 C -0.05 -0.66 0.77 -52.18 -0.04 -0.70 16 9 C -0.15 -2.48 8.17 71.98 0.59 -1.89 16 10 C -0.14 -1.22 8.47 71.98 0.61 -0.61 16 11 C -0.15 -2.14 8.18 71.98 0.59 -1.55 16 12 C 0.52 9.67 7.22 87.66 0.63 10.30 16 13 O -0.57 -14.39 15.44 -3.05 -0.05 -14.44 16 14 N -0.69 -11.15 5.15 -440.04 -2.27 -13.42 16 15 C 0.13 2.44 4.32 45.52 0.20 2.63 16 16 H 0.10 2.05 7.47 -2.39 -0.02 2.03 16 17 C -0.15 -3.64 7.43 31.12 0.23 -3.41 16 18 C -0.12 -2.91 3.63 -10.27 -0.04 -2.95 16 19 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.16 5.77 6.10 86.38 0.53 6.29 16 21 N -0.76 -35.06 5.41 -343.44 -1.86 -36.91 16 22 C -0.24 -13.57 10.47 84.03 0.88 -12.69 16 23 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 25 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 26 Si 0.96 45.88 27.74 68.60 1.90 47.79 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.25 -11.01 6.51 99.48 0.65 -10.36 16 30 C -0.12 -2.02 7.39 31.12 0.23 -1.79 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.68 7.56 -2.39 -0.02 0.66 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.41 5.54 7.79 -92.71 -0.72 4.81 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 1.29 5.51 -2.39 -0.01 1.27 16 40 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 1.19 5.51 -2.39 -0.01 1.18 16 44 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.42 4.78 8.12 -92.70 -0.75 4.03 16 47 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.09 2.27 7.90 -2.38 -0.02 2.25 16 49 H 0.02 0.84 7.84 -2.39 -0.02 0.82 16 50 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.37 16.09 5.53 -92.71 -0.51 15.58 16 52 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 53 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 54 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -75.91 423.80 1.10 -74.82 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -1.15 Total: 31.88 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 6.46 Total: -1.02 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -6.03 Total: -126.61 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.08 Total: -26.85 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.79 kcal Total: -75.91 1.10 -74.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675818262.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.271 kcal (2) G-P(sol) polarization free energy of solvation -75.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds