Wall clock time and date at job start Tue Mar 31 2020 23:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.46778 * 2 1 4 4 C 1.47015 * 111.00062 * 293.63709 * 3 2 1 5 5 C 1.53092 * 109.25815 * 177.60942 * 4 3 2 6 6 O 1.43023 * 109.29689 * 56.82364 * 5 4 3 7 7 C 1.43014 * 113.73442 * 301.40147 * 6 5 4 8 8 H 1.09003 * 109.50876 * 298.64390 * 7 6 5 9 9 C 1.50694 * 109.50657 * 178.55514 * 7 6 5 10 10 O 1.21277 * 120.00017 * 355.08564 * 9 7 6 11 11 N 1.34781 * 120.00404 * 175.09043 * 9 7 6 12 12 C 1.46494 * 120.00247 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47214 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47399 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47497 * 184.98259 * 14 13 12 16 16 H 1.09004 * 109.99724 * 54.22137 * 15 14 13 17 17 C 1.54333 * 109.99057 * 293.18711 * 15 14 13 18 18 C 1.55164 * 103.01952 * 218.66374 * 17 15 14 19 19 C 1.54909 * 101.57818 * 35.30361 * 18 17 15 20 20 N 1.47023 * 109.88484 * 175.31603 * 15 14 13 21 21 C 1.36933 * 125.64724 * 298.39496 * 20 15 14 22 22 H 1.08002 * 120.00367 * 347.48844 * 21 20 15 23 23 C 1.38818 * 119.99597 * 167.48315 * 21 20 15 24 24 N 1.31611 * 120.00423 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99582 * 179.72424 * 23 21 20 26 26 H 1.48501 * 109.47158 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46791 * 119.99870 * 25 23 21 28 28 H 1.48491 * 109.47237 * 239.99971 * 25 23 21 29 29 C 1.47014 * 110.99721 * 170.00140 * 3 2 1 30 30 H 1.09005 * 109.47444 * 60.00250 * 1 2 3 31 31 H 1.09006 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47515 * 299.99927 * 1 2 3 33 33 H 1.08996 * 109.47074 * 240.00565 * 2 1 3 34 34 H 1.09001 * 109.46966 * 119.99799 * 2 1 3 35 35 H 1.09003 * 109.50421 * 297.54216 * 4 3 2 36 36 H 1.09003 * 109.51003 * 57.67078 * 4 3 2 37 37 H 1.08998 * 109.51296 * 176.78061 * 5 4 3 38 38 H 1.09002 * 109.50585 * 296.86919 * 5 4 3 39 39 H 0.97002 * 119.99601 * 359.97438 * 11 9 7 40 40 H 1.09002 * 109.47581 * 59.99647 * 12 11 9 41 41 H 1.09001 * 109.47163 * 299.98961 * 12 11 9 42 42 H 1.09002 * 109.46678 * 59.99653 * 13 12 11 43 43 H 1.08996 * 109.46979 * 300.00146 * 13 12 11 44 44 H 1.09004 * 109.46571 * 64.98485 * 14 13 12 45 45 H 1.09003 * 109.47631 * 304.98737 * 14 13 12 46 46 H 1.08999 * 110.85441 * 100.19675 * 17 15 14 47 47 H 1.09000 * 110.66659 * 337.04322 * 17 15 14 48 48 H 1.08994 * 111.00130 * 277.23334 * 18 17 15 49 49 H 1.08993 * 111.03489 * 153.39509 * 18 17 15 50 50 H 1.09007 * 110.36251 * 204.15164 * 19 18 17 51 51 H 1.09005 * 110.45541 * 81.88210 * 19 18 17 52 52 H 0.96999 * 120.00499 * 179.97438 * 24 23 21 53 53 H 1.08990 * 109.50676 * 62.45910 * 29 3 2 54 54 H 1.09002 * 109.50171 * 302.32062 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6764 2.0652 -1.2573 5 6 2.1513 3.5191 -1.1909 6 8 3.5568 3.5456 -0.9272 7 6 3.9265 2.8916 0.2897 8 1 3.4493 3.3928 1.1319 9 6 5.4234 2.9449 0.4550 10 8 6.1146 3.4091 -0.4268 11 7 5.9941 2.4766 1.5826 12 6 7.4493 2.5289 1.7434 13 6 7.8339 1.9392 3.1018 14 6 9.3536 1.9933 3.2695 15 6 9.7484 1.2923 4.5709 16 1 9.3391 0.2822 4.5893 17 6 9.2215 2.0915 5.7815 18 6 10.3768 1.9700 6.8102 19 6 11.6198 1.9944 5.8861 20 7 11.2132 1.2403 4.6864 21 6 12.0599 0.6021 3.8199 22 1 11.6646 -0.0844 3.0858 23 6 13.4264 0.8376 3.8850 24 7 13.9083 1.6738 4.7798 25 14 14.5822 -0.0389 2.7079 26 1 13.7971 -0.9242 1.8106 27 1 15.3153 0.9646 1.8949 28 1 15.5529 -0.8534 3.4821 29 6 3.4696 1.4312 0.2383 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.1661 1.5600 -2.0899 36 1 0.5961 2.0414 -1.4010 37 1 1.9503 4.0116 -2.1423 38 1 1.6214 4.0390 -0.3928 39 1 5.4412 2.1055 2.2880 40 1 7.7838 3.5650 1.6896 41 1 7.9236 1.9522 0.9493 42 1 7.4993 0.9032 3.1559 43 1 7.3596 2.5161 3.8957 44 1 9.6785 3.0332 3.3039 45 1 9.8303 1.4914 2.4275 46 1 8.3077 1.6448 6.1733 47 1 9.0542 3.1340 5.5109 48 1 10.3152 1.0294 7.3574 49 1 10.3820 2.8182 7.4947 50 1 12.4641 1.5062 6.3730 51 1 11.8770 3.0199 5.6206 52 1 14.8631 1.8381 4.8255 53 1 3.9879 0.9160 -0.5702 54 1 3.6982 0.9448 1.1866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731760418.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:36 Heat of formation + Delta-G solvation = -84.481678 kcal Electronic energy + Delta-G solvation = -29828.259044 eV Core-core repulsion = 25799.352047 eV Total energy + Delta-G solvation = -4028.906997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47333 -39.94718 -39.41316 -37.24816 -36.62783 -34.73164 -33.87911 -32.60557 -31.82804 -31.22662 -29.63340 -27.94616 -26.60585 -25.73222 -25.20525 -23.47756 -22.70022 -21.85158 -21.69090 -21.36295 -20.68977 -18.75396 -18.47306 -17.86041 -17.18836 -17.04388 -16.80688 -16.53833 -16.25824 -16.16706 -15.92745 -15.72727 -15.52994 -15.14738 -14.99969 -14.63685 -14.30910 -13.92029 -13.87612 -13.67937 -13.56174 -13.14759 -13.04555 -12.99779 -12.87742 -12.76691 -12.73899 -12.65596 -12.50068 -12.23564 -11.96039 -11.82162 -11.80845 -11.78306 -11.65249 -11.50563 -11.29208 -11.14252 -10.88127 -10.75751 -10.65840 -10.18676 -9.52112 -8.78102 -7.83844 -5.19236 1.43251 1.43594 1.44863 1.54407 1.75560 2.49797 2.64193 3.00482 3.33803 3.60155 3.67308 3.73263 3.88254 3.94231 3.96095 4.02706 4.04650 4.18441 4.24280 4.27068 4.29660 4.37088 4.44697 4.48053 4.49596 4.60553 4.64085 4.65086 4.72494 4.79570 4.84154 4.87143 4.87889 5.00088 5.00776 5.06084 5.08913 5.15542 5.25936 5.32609 5.35919 5.38519 5.52138 5.54096 5.70460 5.72795 5.81241 5.82463 5.90993 5.98940 6.29080 6.49484 7.13946 7.15319 7.84148 8.50358 9.26922 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.001908 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.711849 B =14670.619485 C =15080.583322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.013 3.987 5 C 0.058 3.942 6 O -0.392 6.392 7 C 0.084 3.916 8 H 0.117 0.883 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.705 5.705 12 C 0.125 3.875 13 C -0.106 4.106 14 C -0.113 4.113 15 C 0.152 3.848 16 H 0.038 0.962 17 C -0.111 4.111 18 C -0.137 4.137 19 C 0.172 3.828 20 N -0.620 5.620 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.069 4.069 24 N -0.951 5.951 25 Si 0.970 3.030 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.292 1.292 29 C 0.034 3.966 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.420 0.580 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.036 0.964 46 H 0.098 0.902 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.034 0.966 51 H -0.012 1.012 52 H 0.245 0.755 53 H 0.030 0.970 54 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.479 -1.079 -4.737 32.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.260 5.260 4 C -0.115 4.115 5 C -0.018 4.018 6 O -0.311 6.311 7 C 0.023 3.977 8 H 0.135 0.865 9 C 0.299 3.701 10 O -0.454 6.454 11 N -0.359 5.359 12 C 0.001 3.999 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.046 3.954 16 H 0.055 0.945 17 C -0.149 4.149 18 C -0.176 4.176 19 C 0.046 3.954 20 N -0.344 5.344 21 C -0.356 4.356 22 H 0.095 0.905 23 C -0.262 4.262 24 N -0.600 5.600 25 Si 0.799 3.201 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.219 1.219 29 C -0.095 4.095 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.258 0.742 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.117 0.883 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.006 0.994 52 H 0.054 0.946 53 H 0.048 0.952 54 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -31.881 -0.459 -5.144 32.297 hybrid contribution 1.686 -0.855 -1.155 2.216 sum -30.195 -1.314 -6.299 30.873 Atomic orbital electron populations 1.21767 0.93357 1.02488 1.02578 1.22211 0.97252 0.87228 1.01403 1.62334 1.11811 1.17524 1.34312 1.22919 1.03113 0.95157 0.90297 1.22978 0.79616 0.95872 1.03354 1.88102 1.25726 1.77031 1.40253 1.21958 0.90601 0.94796 0.90331 0.86514 1.20666 0.90218 0.77260 0.81912 1.90725 1.65454 1.46405 1.42813 1.45760 1.08252 1.62671 1.19191 1.21292 0.79501 1.00742 0.98343 1.21631 0.95047 1.02516 0.95266 1.21830 0.95076 0.99780 0.98676 1.21231 0.83438 0.96651 0.94121 0.94465 1.22592 0.97939 1.00201 0.94136 1.22878 0.95806 1.01509 0.97392 1.21259 0.94669 0.92856 0.86570 1.44890 1.01822 1.60730 1.26962 1.19345 0.88208 1.17431 1.10574 0.90513 1.25649 0.98796 1.00637 1.01146 1.70156 1.11681 1.40295 1.37871 0.85124 0.78987 0.77529 0.78455 1.19073 1.22340 1.21893 1.22638 0.89081 0.94445 1.03311 0.92485 0.91153 0.91700 0.95198 0.89503 0.95005 0.86967 0.86699 0.90660 0.74161 0.92896 0.93317 0.89714 0.88861 0.94065 0.94550 0.88309 0.91090 0.91782 0.90175 0.94764 0.99390 0.94587 0.95216 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.85 71.98 0.71 -0.27 16 2 C 0.05 0.44 5.68 86.30 0.49 0.93 16 3 N -0.53 -6.42 4.73 -895.21 -4.23 -10.65 16 4 C 0.01 0.15 5.44 86.31 0.47 0.62 16 5 C 0.06 0.79 7.01 72.01 0.50 1.30 16 6 O -0.39 -9.02 10.01 -130.02 -1.30 -10.32 16 7 C 0.08 1.54 3.22 29.88 0.10 1.64 16 8 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 9 C 0.51 12.80 7.18 87.65 0.63 13.43 16 10 O -0.58 -21.10 16.51 15.94 0.26 -20.83 16 11 N -0.70 -13.33 5.52 -463.06 -2.56 -15.89 16 12 C 0.13 3.07 5.67 86.38 0.49 3.56 16 13 C -0.11 -2.35 5.10 30.59 0.16 -2.19 16 14 C -0.11 -3.85 4.71 30.59 0.14 -3.71 16 15 C 0.15 5.69 3.17 45.34 0.14 5.83 16 16 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.11 -3.30 5.69 31.79 0.18 -3.12 16 18 C -0.14 -4.84 7.09 31.99 0.23 -4.62 16 19 C 0.17 8.50 5.45 86.86 0.47 8.98 16 20 N -0.62 -31.30 3.13 -668.24 -2.09 -33.39 16 21 C -0.23 -12.68 9.73 84.04 0.82 -11.86 16 22 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -4.03 5.47 84.86 0.46 -3.57 16 24 N -0.95 -58.36 10.48 21.65 0.23 -58.14 16 25 Si 0.97 46.96 29.55 68.60 2.03 48.98 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 C 0.03 0.48 4.88 86.32 0.42 0.91 16 30 H 0.06 0.36 6.52 -2.38 -0.02 0.35 16 31 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.03 0.33 8.12 -2.39 -0.02 0.31 16 34 H 0.09 0.69 8.04 -2.39 -0.02 0.67 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.85 6.38 -2.39 -0.02 0.84 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.42 4.45 8.35 -92.71 -0.77 3.67 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.09 1.63 7.63 -2.39 -0.02 1.61 16 44 H 0.04 1.53 8.04 -2.38 -0.02 1.51 16 45 H 0.04 1.42 7.86 -2.39 -0.02 1.40 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.07 2.00 7.78 -2.39 -0.02 1.98 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 49 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.03 1.93 6.75 -2.38 -0.02 1.92 16 51 H -0.01 -0.65 8.11 -2.38 -0.02 -0.67 16 52 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 53 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 54 H 0.12 1.06 7.96 -2.39 -0.02 1.04 16 Total: -1.00 -79.24 418.22 -1.16 -80.40 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.08 Total: 11.98 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.42 Total: 7.86 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -8.65 Total: -118.07 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.04 Total: -31.15 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -79.24 -1.16 -80.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731760418.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.080 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds