Wall clock time and date at job start Wed Apr 1 2020 00:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47136 * 2 1 4 4 C 1.46500 * 120.00057 * 270.00332 * 3 2 1 5 5 C 1.53002 * 109.46985 * 269.99666 * 4 3 2 6 6 C 1.34769 * 119.99933 * 89.99924 * 3 2 1 7 7 O 1.21284 * 120.00061 * 180.02562 * 6 3 2 8 8 C 1.50697 * 120.00182 * 0.02562 * 6 3 2 9 9 C 1.52999 * 109.47457 * 179.97438 * 8 6 3 10 10 C 1.52997 * 109.47472 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47634 * 179.97438 * 10 9 8 12 12 O 1.21292 * 119.99536 * 0.02562 * 11 10 9 13 13 N 1.34766 * 120.00502 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64926 * 0.03854 * 13 11 10 15 15 C 1.54325 * 107.27089 * 181.02697 * 14 13 11 16 16 H 1.09006 * 110.86699 * 263.75598 * 15 14 13 17 17 N 1.46504 * 110.71678 * 140.55927 * 15 14 13 18 18 C 1.36935 * 119.99849 * 91.47720 * 17 15 14 19 19 H 1.07997 * 120.00561 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99619 * 179.97438 * 18 17 15 21 21 N 1.31619 * 120.00303 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46845 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 119.99829 * 22 20 18 25 25 H 1.48498 * 109.47295 * 240.00436 * 22 20 18 26 26 C 1.55152 * 102.94540 * 22.19449 * 15 14 13 27 27 C 1.47429 * 125.65317 * 180.02562 * 13 11 10 28 28 H 1.09003 * 110.36522 * 274.74369 * 27 13 11 29 29 C 1.53004 * 110.45764 * 37.01445 * 27 13 11 30 30 H 1.08997 * 109.47257 * 299.99677 * 1 2 3 31 31 H 1.08995 * 109.47337 * 60.00061 * 1 2 3 32 32 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47257 * 240.00323 * 2 1 3 34 34 H 1.08995 * 109.47337 * 119.99939 * 2 1 3 35 35 H 1.09004 * 109.46901 * 29.99584 * 4 3 2 36 36 H 1.08993 * 109.47324 * 149.99563 * 4 3 2 37 37 H 1.09005 * 109.47063 * 60.00190 * 5 4 3 38 38 H 1.09001 * 109.46934 * 179.97438 * 5 4 3 39 39 H 1.08989 * 109.47074 * 300.00192 * 5 4 3 40 40 H 1.09002 * 109.47433 * 59.99978 * 8 6 3 41 41 H 1.09008 * 109.47443 * 300.00106 * 8 6 3 42 42 H 1.09002 * 109.47298 * 59.99756 * 9 8 6 43 43 H 1.08999 * 109.47325 * 299.99763 * 9 8 6 44 44 H 1.09002 * 109.47343 * 60.00058 * 10 9 8 45 45 H 1.08999 * 109.47463 * 300.00376 * 10 9 8 46 46 H 1.08996 * 109.87779 * 61.60557 * 14 13 11 47 47 H 1.08999 * 109.88014 * 300.44232 * 14 13 11 48 48 H 0.96996 * 119.99617 * 271.47406 * 17 15 14 49 49 H 0.97000 * 119.99517 * 0.02562 * 21 20 18 50 50 H 1.08995 * 111.00862 * 82.56872 * 26 15 14 51 51 H 1.09002 * 111.00248 * 206.42649 * 26 15 14 52 52 H 1.08994 * 109.46915 * 175.46431 * 29 27 13 53 53 H 1.08994 * 109.47156 * 295.47240 * 29 27 13 54 54 H 1.08998 * 109.46845 * 55.47121 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0166 1.1671 7 8 2.6468 3.1602 1.1672 8 6 1.9923 1.3060 2.4722 9 6 2.3242 2.2432 3.6352 10 6 2.0691 1.5220 4.9602 11 6 2.3966 2.4448 6.1057 12 8 2.7944 3.5690 5.8840 13 7 2.2475 2.0211 7.3763 14 6 1.7773 0.6896 7.7860 15 6 1.7432 0.6704 9.3287 16 1 2.6545 0.2285 9.7318 17 7 0.5625 -0.0497 9.8121 18 6 0.6369 -1.3929 10.0679 19 1 1.5658 -1.9215 9.9129 20 6 -0.4817 -2.0751 10.5264 21 7 -1.6137 -1.4308 10.7157 22 14 -0.3805 -3.9075 10.8747 23 1 0.9931 -4.3914 10.5843 24 1 -0.7016 -4.1585 12.3027 25 1 -1.3523 -4.6293 10.0145 26 6 1.6554 2.1759 9.6932 27 6 2.5291 2.8157 8.5858 28 1 3.5848 2.7461 8.8481 29 6 2.1302 4.2771 8.3704 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.5816 1.6877 -2.0284 36 1 2.0954 3.1410 -1.1384 37 1 3.8745 0.7623 -1.8408 38 1 3.8889 2.3450 -2.6546 39 1 4.3882 2.2156 -0.9508 40 1 2.6229 0.4187 2.5298 41 1 0.9444 1.0114 2.5302 42 1 1.6940 3.1307 3.5778 43 1 3.3721 2.5373 3.5771 44 1 2.6990 0.6343 5.0179 45 1 1.0211 1.2281 5.0181 46 1 2.4636 -0.0743 7.4207 47 1 0.7771 0.5120 7.3909 48 1 -0.2719 0.4250 9.9509 49 1 -1.6663 -0.4793 10.5345 50 1 0.6272 2.5329 9.6342 51 1 2.0766 2.3640 10.6808 52 1 2.2694 4.8321 9.2980 53 1 2.7534 4.7124 7.5893 54 1 1.0835 4.3275 8.0704 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755685917.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:24 Heat of formation + Delta-G solvation = -93.663479 kcal Electronic energy + Delta-G solvation = -29992.798092 eV Core-core repulsion = 25963.492942 eV Total energy + Delta-G solvation = -4029.305150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.38574 -41.00195 -38.89908 -37.27958 -36.30075 -35.43549 -33.34647 -33.16834 -32.71643 -30.64590 -29.89168 -29.09576 -26.68638 -25.73260 -24.98668 -24.43550 -23.35145 -22.25039 -21.75469 -20.12191 -19.71420 -19.33728 -18.07137 -18.01501 -17.51310 -17.40238 -16.78720 -16.74889 -16.22983 -15.88915 -15.46434 -15.17145 -15.06201 -14.83958 -14.75622 -14.49020 -14.45252 -14.18400 -13.79408 -13.54188 -13.50634 -13.33679 -13.25839 -13.03652 -12.93700 -12.85789 -12.74068 -12.64419 -12.59633 -12.42640 -12.32918 -12.08001 -12.04978 -11.91957 -11.81030 -11.76655 -11.69987 -11.20524 -11.01620 -10.86264 -10.57537 -9.72893 -9.64998 -9.15193 -8.34806 -5.31732 1.60307 1.62470 1.64199 1.74184 1.85528 1.89648 2.09863 2.74488 3.34557 3.40945 3.50563 3.71210 3.80853 3.81477 3.96833 4.00361 4.06757 4.10078 4.13486 4.22135 4.25158 4.39204 4.39702 4.41713 4.47082 4.48685 4.51559 4.59406 4.62480 4.64641 4.68135 4.75086 4.76069 4.81843 4.93667 5.00942 5.02205 5.04596 5.07898 5.10942 5.18746 5.24240 5.25261 5.31684 5.38796 5.48891 5.63299 5.66051 6.37567 6.52935 6.55205 7.08848 7.16728 7.18137 7.98883 8.10698 9.16553 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.002348 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.151386 B =11924.262770 C =14072.027732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.098 3.902 3 N -0.613 5.613 4 C 0.105 3.895 5 C -0.160 4.160 6 C 0.506 3.494 7 O -0.589 6.589 8 C -0.133 4.133 9 C -0.077 4.077 10 C -0.129 4.129 11 C 0.519 3.481 12 O -0.578 6.578 13 N -0.613 5.613 14 C 0.090 3.910 15 C 0.169 3.831 16 H 0.071 0.929 17 N -0.737 5.737 18 C -0.328 4.328 19 H 0.074 0.926 20 C -0.102 4.102 21 N -0.977 5.977 22 Si 1.130 2.870 23 H -0.268 1.268 24 H -0.297 1.297 25 H -0.293 1.293 26 C -0.127 4.127 27 C 0.135 3.865 28 H 0.083 0.917 29 C -0.151 4.151 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.046 0.954 43 H 0.052 0.948 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.361 0.639 49 H 0.245 0.755 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.079 0.921 53 H 0.064 0.936 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.255 0.967 -22.244 23.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.345 5.345 4 C -0.017 4.017 5 C -0.219 4.219 6 C 0.295 3.705 7 O -0.470 6.470 8 C -0.172 4.172 9 C -0.116 4.116 10 C -0.168 4.168 11 C 0.310 3.690 12 O -0.459 6.459 13 N -0.347 5.347 14 C -0.036 4.036 15 C 0.059 3.941 16 H 0.089 0.911 17 N -0.377 5.377 18 C -0.459 4.459 19 H 0.092 0.908 20 C -0.294 4.294 21 N -0.625 5.625 22 Si 0.955 3.045 23 H -0.193 1.193 24 H -0.224 1.224 25 H -0.220 1.220 26 C -0.166 4.166 27 C 0.031 3.969 28 H 0.101 0.899 29 C -0.208 4.208 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.125 0.875 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.194 0.806 49 H 0.056 0.944 50 H 0.083 0.917 51 H 0.112 0.888 52 H 0.098 0.902 53 H 0.083 0.917 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.050 0.691 -21.965 23.404 hybrid contribution 0.292 1.908 -0.303 1.953 sum 8.342 2.599 -22.268 23.921 Atomic orbital electron populations 1.22212 0.95375 1.03404 1.02005 1.21877 0.94771 0.80489 1.05264 1.48236 1.65284 1.15560 1.05458 1.21493 0.97626 0.97514 0.85075 1.22064 0.95826 1.02690 1.01284 1.21209 0.76191 0.86167 0.86891 1.90700 1.47769 1.20326 1.88173 1.21752 1.05808 0.99836 0.89797 1.20890 1.01786 0.97369 0.91543 1.21673 1.05138 0.98786 0.91212 1.20939 0.76732 0.87998 0.83356 1.90638 1.48605 1.22097 1.84554 1.48736 1.65252 1.15493 1.05186 1.22900 0.99176 0.82969 0.98537 1.21301 0.90615 0.91402 0.90821 0.91127 1.42542 1.09309 1.06644 1.79237 1.20441 0.98716 0.86352 1.40425 0.90821 1.27107 0.92178 1.10010 1.00068 1.70942 1.27650 1.09806 1.54118 0.82580 0.75799 0.70127 0.75971 1.19254 1.22414 1.21958 1.23078 0.99985 0.94864 0.98680 1.21906 0.99236 0.91773 0.83936 0.89901 1.22012 1.01057 0.94934 1.02821 0.93278 0.92659 0.89617 0.88224 0.88569 0.87984 0.92504 0.91122 0.90343 0.94963 0.85829 0.86573 0.93505 0.92936 0.86466 0.87473 0.90610 0.92229 0.80604 0.94426 0.91687 0.88845 0.90190 0.91666 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 71.98 0.74 -0.60 16 2 C 0.10 0.75 5.93 86.38 0.51 1.26 16 3 N -0.61 -9.35 2.47 -821.83 -2.03 -11.38 16 4 C 0.11 1.51 6.13 86.38 0.53 2.03 16 5 C -0.16 -2.08 10.24 71.98 0.74 -1.34 16 6 C 0.51 11.21 7.67 87.66 0.67 11.88 16 7 O -0.59 -19.15 15.56 -3.04 -0.05 -19.20 16 8 C -0.13 -2.20 4.25 29.85 0.13 -2.07 16 9 C -0.08 -1.88 3.79 30.59 0.12 -1.76 16 10 C -0.13 -2.88 4.89 29.85 0.15 -2.74 16 11 C 0.52 15.98 7.63 87.66 0.67 16.65 16 12 O -0.58 -21.62 13.71 -3.07 -0.04 -21.66 16 13 N -0.61 -18.41 3.24 -788.16 -2.56 -20.97 16 14 C 0.09 2.79 6.24 86.73 0.54 3.33 16 15 C 0.17 5.96 3.61 46.18 0.17 6.12 16 16 H 0.07 2.49 8.09 -2.38 -0.02 2.47 16 17 N -0.74 -33.62 5.15 -317.32 -1.63 -35.26 16 18 C -0.33 -16.81 9.96 84.03 0.84 -15.98 16 19 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 20 C -0.10 -5.56 5.50 84.86 0.47 -5.10 16 21 N -0.98 -58.34 13.70 21.65 0.30 -58.04 16 22 Si 1.13 48.91 29.92 68.60 2.05 50.96 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 26 C -0.13 -3.85 6.13 31.98 0.20 -3.65 16 27 C 0.13 3.87 3.76 45.46 0.17 4.04 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 C -0.15 -4.30 8.60 71.98 0.62 -3.68 16 30 H 0.05 0.51 7.22 -2.39 -0.02 0.49 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 33 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 34 H 0.10 0.51 6.44 -2.39 -0.02 0.50 16 35 H 0.10 0.88 8.07 -2.38 -0.02 0.86 16 36 H 0.06 1.12 7.42 -2.39 -0.02 1.10 16 37 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.12 1.33 7.40 -2.39 -0.02 1.32 16 41 H 0.12 1.46 7.19 -2.38 -0.02 1.44 16 42 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 43 H 0.05 1.51 8.06 -2.39 -0.02 1.50 16 44 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.11 2.14 8.14 -2.39 -0.02 2.13 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 2.01 8.03 -2.39 -0.02 1.99 16 48 H 0.36 17.62 6.59 -92.71 -0.61 17.01 16 49 H 0.25 14.58 6.77 -92.71 -0.63 13.95 16 50 H 0.06 2.10 7.92 -2.39 -0.02 2.08 16 51 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 52 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.06 2.11 6.10 -2.39 -0.01 2.10 16 54 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.34 426.61 3.67 -71.66 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.39 Total: 35.48 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 7.24 Total: 8.41 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -5.93 Total: -125.65 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.09 Total: -40.86 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.96 kcal Total: -75.34 3.67 -71.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755685917.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.000 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds