Wall clock time and date at job start Tue Mar 31 2020 22:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46505 * 109.47220 * 2 1 4 4 C 1.34771 * 120.00414 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99826 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00115 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.46919 * 174.37327 * 6 4 3 8 8 C 1.46203 * 111.00156 * 64.74987 * 7 6 4 9 9 C 1.51271 * 109.09413 * 144.75742 * 8 7 6 10 10 C 1.53833 * 109.63825 * 92.40537 * 9 8 7 11 11 N 1.47610 * 111.28702 * 319.97674 * 10 9 8 12 12 C 1.34777 * 118.74415 * 138.30698 * 11 10 9 13 13 O 1.21283 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99976 * 359.97438 * 12 11 10 15 15 C 1.53008 * 109.47081 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47116 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47064 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47477 * 180.02562 * 17 16 15 19 19 H 1.08008 * 119.99470 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00422 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99884 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00038 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47089 * 90.00152 * 22 20 18 24 24 H 1.48498 * 109.46796 * 210.00289 * 22 20 18 25 25 H 1.48500 * 109.47221 * 330.00064 * 22 20 18 26 26 C 1.44874 * 122.50698 * 318.28953 * 11 10 9 27 27 C 1.41441 * 111.00187 * 293.71163 * 7 6 4 28 28 H 1.09006 * 109.47263 * 299.99586 * 1 2 3 29 29 H 1.09005 * 109.47616 * 59.99935 * 1 2 3 30 30 H 1.08998 * 109.47270 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47263 * 240.00414 * 2 1 3 32 32 H 1.08996 * 109.47456 * 119.99878 * 2 1 3 33 33 H 0.97004 * 119.99297 * 359.97438 * 3 2 1 34 34 H 1.08990 * 109.47239 * 54.37422 * 6 4 3 35 35 H 1.09006 * 109.46575 * 294.36887 * 6 4 3 36 36 H 1.08994 * 109.53528 * 264.64345 * 8 7 6 37 37 H 1.09000 * 109.53401 * 24.87342 * 8 7 6 38 38 H 1.09004 * 109.44706 * 212.45905 * 9 8 7 39 39 H 1.08994 * 109.44911 * 332.36614 * 9 8 7 40 40 H 1.08999 * 109.12595 * 199.50957 * 10 9 8 41 41 H 1.09009 * 109.06445 * 80.40913 * 10 9 8 42 42 H 1.09003 * 109.47308 * 299.99600 * 14 12 11 43 43 H 1.08998 * 109.47237 * 60.00105 * 14 12 11 44 44 H 1.08998 * 109.47218 * 300.00398 * 15 14 12 45 45 H 1.09008 * 109.46889 * 60.00221 * 15 14 12 46 46 H 1.08992 * 109.47292 * 300.00335 * 16 15 14 47 47 H 1.08998 * 109.46949 * 60.00466 * 16 15 14 48 48 H 1.09009 * 109.47188 * 300.00119 * 17 16 15 49 49 H 1.09000 * 109.47482 * 59.99753 * 17 16 15 50 50 H 0.97004 * 120.00076 * 179.97438 * 21 20 18 51 51 H 1.08999 * 109.43910 * 329.67165 * 26 11 10 52 52 H 1.09000 * 109.43690 * 209.80534 * 26 11 10 53 53 H 1.08994 * 109.38913 * 311.84835 * 27 7 6 54 54 H 1.09003 * 109.38722 * 71.53425 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8456 3.0484 0.0001 7 7 5.3083 3.0506 0.1351 8 6 5.9427 2.4298 -1.0267 9 6 7.2417 3.1462 -1.3229 10 6 8.3993 2.4386 -0.5978 11 7 8.0001 2.0082 0.7565 12 6 8.3904 0.7939 1.1920 13 8 8.0756 0.4174 2.3011 14 6 9.2180 -0.0960 0.3009 15 6 9.5237 -1.4059 1.0303 16 6 10.3633 -2.3097 0.1254 17 6 10.6684 -3.6197 0.8546 18 6 11.4960 -4.5097 -0.0365 19 1 11.7760 -4.1746 -1.0243 20 6 11.8957 -5.7516 0.4093 21 7 11.5543 -6.1598 1.6119 22 14 12.9210 -6.8551 -0.6956 23 1 14.3627 -6.5834 -0.4659 24 1 12.6292 -8.2772 -0.3829 25 1 12.5860 -6.5819 -2.1163 26 6 7.2051 2.8413 1.6355 27 6 5.7012 2.5594 1.4020 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.3879 2.1185 -0.0004 34 1 3.4028 3.5900 0.8358 35 1 3.5664 3.5328 -0.9357 36 1 6.1457 1.3803 -0.8137 37 1 5.2796 2.5063 -1.8883 38 1 7.4255 3.1349 -2.3973 39 1 7.1741 4.1778 -0.9776 40 1 9.2438 3.1234 -0.5202 41 1 8.7005 1.5649 -1.1759 42 1 8.6650 -0.3097 -0.6138 43 1 10.1523 0.4071 0.0516 44 1 10.0767 -1.1920 1.9449 45 1 8.5895 -1.9092 1.2800 46 1 9.8099 -2.5235 -0.7889 47 1 11.2974 -1.8066 -0.1246 48 1 11.2218 -3.4061 1.7691 49 1 9.7342 -4.1226 1.1043 50 1 11.8352 -7.0338 1.9254 51 1 7.4139 3.8907 1.4276 52 1 7.4587 2.6203 2.6723 53 1 5.1159 3.0519 2.1784 54 1 5.5237 1.4847 1.4443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588311708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:28 Heat of formation + Delta-G solvation = -107.915351 kcal Electronic energy + Delta-G solvation = -30437.226425 eV Core-core repulsion = 26407.303267 eV Total energy + Delta-G solvation = -4029.923157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76057 -40.84533 -38.84045 -36.72689 -36.51685 -35.93266 -34.68014 -33.57157 -32.18211 -31.60704 -30.06076 -27.83637 -27.41197 -26.29846 -24.47132 -23.68971 -22.86062 -22.01659 -21.78042 -21.27296 -19.74172 -18.47782 -18.30526 -18.13639 -17.39017 -17.11098 -16.99595 -16.75265 -16.51007 -16.29431 -16.16324 -15.62762 -15.38172 -15.09920 -14.75126 -14.58719 -14.53071 -14.12952 -13.81251 -13.68842 -13.47948 -13.34249 -13.22643 -13.18129 -12.85635 -12.76525 -12.75467 -12.51748 -12.40272 -12.33150 -12.25723 -12.19358 -12.13084 -11.79799 -11.73961 -11.43355 -11.37899 -11.34767 -11.14735 -10.70841 -10.57392 -10.14307 -9.63437 -9.17285 -8.20390 -6.33211 1.38407 1.41690 1.52743 1.59215 1.61853 2.07277 2.23968 2.40576 2.86637 3.11917 3.56972 3.82187 3.86785 3.95238 3.99534 4.05350 4.10211 4.12132 4.18391 4.21469 4.30739 4.42041 4.43655 4.52448 4.56675 4.59351 4.62366 4.72014 4.74863 4.78788 4.82044 4.85694 4.88795 4.97279 4.97994 5.07610 5.12271 5.16903 5.19125 5.28470 5.30790 5.35999 5.46147 5.52604 5.73214 5.73498 5.84396 5.98850 6.19335 6.22570 6.39696 6.55816 6.84658 7.20637 7.27044 7.36340 8.92226 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011011 B = 0.002260 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.382274 B =12387.143711 C =13946.396398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.109 3.891 3 N -0.718 5.718 4 C 0.464 3.536 5 O -0.586 6.586 6 C 0.045 3.955 7 N -0.524 5.524 8 C 0.070 3.930 9 C -0.121 4.121 10 C 0.096 3.904 11 N -0.604 5.604 12 C 0.503 3.497 13 O -0.590 6.590 14 C -0.126 4.126 15 C -0.093 4.093 16 C -0.094 4.094 17 C 0.019 3.981 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.009 4.009 21 N -0.939 5.939 22 Si 0.973 3.027 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.259 1.259 26 C 0.121 3.879 27 C 0.055 3.945 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.418 0.582 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.020 0.980 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.045 0.955 45 H 0.032 0.968 46 H 0.057 0.943 47 H 0.065 0.935 48 H -0.015 1.015 49 H -0.020 1.020 50 H 0.263 0.737 51 H 0.110 0.890 52 H 0.064 0.936 53 H 0.093 0.907 54 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.288 29.845 -9.286 38.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.373 5.373 4 C 0.251 3.749 5 O -0.466 6.466 6 C -0.086 4.086 7 N -0.245 5.245 8 C -0.057 4.057 9 C -0.159 4.159 10 C -0.025 4.025 11 N -0.336 5.336 12 C 0.292 3.708 13 O -0.471 6.471 14 C -0.165 4.165 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.018 4.018 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.206 4.206 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.003 4.003 27 C -0.075 4.075 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.256 0.744 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.138 0.862 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.004 0.996 49 H -0.001 1.001 50 H 0.072 0.928 51 H 0.128 0.872 52 H 0.082 0.918 53 H 0.111 0.889 54 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -21.719 29.335 -8.612 37.503 hybrid contribution -0.200 -2.043 0.366 2.086 sum -21.920 27.292 -8.246 35.962 Atomic orbital electron populations 1.21926 0.91512 1.03954 1.03602 1.21255 0.96483 0.83376 1.00388 1.46138 1.07178 1.09239 1.74743 1.22963 0.82633 0.94274 0.75053 1.90783 1.56354 1.48516 1.50937 1.22597 0.88059 0.90323 1.07638 1.58978 1.05170 1.58227 1.02169 1.21546 0.96520 0.96028 0.91593 1.21863 0.91992 1.00638 1.01410 1.22378 0.98471 1.01143 0.80538 1.47950 1.52463 1.15999 1.17206 1.21256 0.79727 0.82573 0.87209 1.90658 1.58549 1.74177 1.23685 1.21689 1.01304 0.94789 0.98766 1.21228 0.98879 0.94720 0.98310 1.21434 0.98875 0.95019 0.97774 1.19049 0.94409 0.93259 0.95060 1.21733 1.32940 1.01514 1.01745 0.91473 1.26147 0.97727 0.99950 0.96765 1.70145 1.47532 1.20606 1.19673 0.85329 0.78696 0.77203 0.79092 1.19461 1.20867 1.18297 1.21511 0.89103 0.95816 0.93864 1.21668 0.96914 0.97528 0.91434 0.90906 0.90476 0.90576 0.93416 0.94219 0.74419 0.85254 0.84484 0.96188 0.90606 0.87867 0.88952 0.89190 0.89544 0.87657 0.86159 0.93661 0.94909 0.92451 0.91612 0.99613 1.00122 0.92810 0.87157 0.91789 0.88920 0.97703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.03 71.98 0.72 -0.44 16 2 C 0.11 1.71 6.39 86.38 0.55 2.26 16 3 N -0.72 -9.01 5.56 -463.06 -2.57 -11.59 16 4 C 0.46 8.68 7.27 87.66 0.64 9.32 16 5 O -0.59 -18.30 12.62 -3.05 -0.04 -18.34 16 6 C 0.04 0.47 5.58 85.56 0.48 0.94 16 7 N -0.52 -8.31 3.99 -916.21 -3.66 -11.96 16 8 C 0.07 1.24 4.13 85.87 0.35 1.59 16 9 C -0.12 -1.41 5.78 30.31 0.18 -1.24 16 10 C 0.10 1.48 5.99 86.45 0.52 2.00 16 11 N -0.60 -14.63 2.18 -817.83 -1.79 -16.42 16 12 C 0.50 16.85 7.63 87.66 0.67 17.52 16 13 O -0.59 -25.73 15.41 -3.04 -0.05 -25.77 16 14 C -0.13 -3.87 4.04 29.85 0.12 -3.75 16 15 C -0.09 -3.87 4.50 30.60 0.14 -3.73 16 16 C -0.09 -4.19 5.15 30.59 0.16 -4.03 16 17 C 0.02 1.13 4.97 29.85 0.15 1.28 16 18 C -0.54 -32.74 9.11 25.60 0.23 -32.51 16 19 H 0.07 3.80 7.74 -2.91 -0.02 3.77 16 20 C -0.01 -0.54 5.46 84.66 0.46 -0.08 16 21 N -0.94 -61.14 13.29 21.45 0.28 -60.86 16 22 Si 0.97 46.21 29.54 68.60 2.03 48.24 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.12 2.65 5.51 87.29 0.48 3.13 16 27 C 0.05 1.20 4.93 87.91 0.43 1.63 16 28 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 1.78 8.47 -92.71 -0.79 0.99 16 34 H 0.13 0.67 7.92 -2.39 -0.02 0.66 16 35 H 0.14 0.60 7.94 -2.38 -0.02 0.58 16 36 H 0.02 0.54 6.22 -2.39 -0.01 0.53 16 37 H 0.08 1.13 7.58 -2.39 -0.02 1.12 16 38 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.09 0.90 7.98 -2.39 -0.02 0.88 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.09 1.33 5.87 -2.38 -0.01 1.32 16 42 H 0.11 2.89 7.41 -2.39 -0.02 2.87 16 43 H 0.12 2.93 8.04 -2.39 -0.02 2.91 16 44 H 0.04 2.00 8.10 -2.39 -0.02 1.99 16 45 H 0.03 1.52 8.10 -2.38 -0.02 1.50 16 46 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 48 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 49 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 50 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 51 H 0.11 1.72 8.11 -2.39 -0.02 1.70 16 52 H 0.06 1.70 7.28 -2.39 -0.02 1.69 16 53 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 54 H 0.00 0.16 6.21 -2.39 -0.01 0.14 16 Total: -1.00 -91.08 419.07 0.57 -90.51 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.08 Total: 12.29 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 6.28 Total: -6.10 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -7.73 Total: -100.82 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.09 Total: -44.11 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -91.08 0.57 -90.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588311708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.409 kcal (2) G-P(sol) polarization free energy of solvation -91.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds