Wall clock time and date at job start Tue Mar 31 2020 23:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21284 * 120.00043 * 2 1 4 4 N 1.34777 * 120.00188 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00180 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.46575 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46575 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46562 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46899 * 179.97438 * 9 8 7 11 11 C 1.53119 * 109.52018 * 185.00022 * 10 9 8 12 12 C 1.53039 * 109.27478 * 182.37728 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47259 * 60.00225 * 22 20 18 24 24 H 1.48499 * 109.47362 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47363 * 300.00100 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.09001 * 109.47360 * 240.00328 * 1 2 3 29 29 H 1.09002 * 109.47119 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47544 * 120.00454 * 1 2 3 31 31 H 0.97001 * 119.99654 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47209 * 60.00299 * 5 4 2 33 33 H 1.09000 * 109.46995 * 299.99875 * 5 4 2 34 34 H 1.08996 * 109.47245 * 60.00589 * 6 5 4 35 35 H 1.09000 * 109.47339 * 299.99749 * 6 5 4 36 36 H 1.08996 * 109.46850 * 60.00350 * 7 6 5 37 37 H 1.09000 * 109.47085 * 299.99908 * 7 6 5 38 38 H 1.09001 * 109.46952 * 60.00229 * 8 7 6 39 39 H 1.09000 * 109.47339 * 299.99752 * 8 7 6 40 40 H 1.09001 * 109.47218 * 60.00493 * 9 8 7 41 41 H 1.09001 * 109.47694 * 300.00008 * 9 8 7 42 42 H 1.08994 * 109.52117 * 305.13031 * 10 9 8 43 43 H 1.08998 * 109.50519 * 62.44416 * 11 10 9 44 44 H 1.08998 * 109.50523 * 302.31641 * 11 10 9 45 45 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 46 46 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 47 47 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 48 48 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 49 49 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 50 50 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 52 52 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 53 53 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 54 54 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1558 -2.6097 0.0014 7 6 5.6858 -2.6097 0.0001 8 6 6.1958 -4.0523 0.0022 9 6 7.7258 -4.0522 0.0003 10 6 8.2358 -5.4948 0.0030 11 6 9.7619 -5.4976 0.1269 12 6 10.2708 -6.9398 0.0694 13 7 9.8637 -7.5535 -1.2011 14 6 10.4516 -8.8913 -1.3518 15 6 11.9479 -8.7706 -1.4835 16 8 12.4628 -7.6757 -1.5691 17 7 12.7141 -9.8792 -1.5061 18 6 14.0754 -9.7693 -1.6264 19 1 14.5338 -8.7945 -1.7027 20 6 14.8652 -10.9123 -1.6503 21 7 14.3073 -12.0986 -1.5580 22 14 16.7199 -10.7627 -1.8135 23 1 17.2559 -9.9801 -0.6709 24 1 17.3278 -12.1176 -1.8145 25 1 17.0508 -10.0714 -3.0855 26 6 8.4011 -7.6048 -1.3216 27 6 7.8365 -6.1824 -1.3056 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 1.6958 -2.0072 0.0005 32 1 4.0095 -0.6528 0.8895 33 1 4.0088 -0.6540 -0.8905 34 1 3.7922 -3.1245 -0.8879 35 1 3.7928 -3.1226 0.8921 36 1 6.0498 -2.0948 0.8892 37 1 6.0484 -2.0970 -0.8908 38 1 5.8317 -4.5676 -0.8866 39 1 5.8332 -4.5646 0.8934 40 1 8.0902 -3.5368 0.8889 41 1 8.0881 -3.5400 -0.8911 42 1 7.8009 -6.0333 0.8450 43 1 10.0508 -5.0475 1.0767 44 1 10.1948 -4.9260 -0.6940 45 1 9.8483 -7.5073 0.8985 46 1 11.3583 -6.9443 0.1429 47 1 10.0457 -9.3682 -2.2439 48 1 10.2114 -9.4944 -0.4762 49 1 12.3023 -10.7548 -1.4379 50 1 14.8586 -12.8964 -1.5750 51 1 8.1307 -8.0923 -2.2582 52 1 7.9874 -8.1691 -0.4858 53 1 6.7497 -6.2215 -1.3792 54 1 8.2391 -5.6215 -2.1490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327498564.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:24 Heat of formation + Delta-G solvation = -133.481533 kcal Electronic energy + Delta-G solvation = -28430.199172 eV Core-core repulsion = 24399.167382 eV Total energy + Delta-G solvation = -4031.031790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71098 -40.59350 -39.43864 -37.49412 -36.23651 -35.77185 -34.30065 -33.25663 -31.92512 -31.61896 -30.32335 -28.68234 -26.97672 -25.66369 -24.30081 -23.50395 -22.28035 -21.76495 -21.29561 -20.98083 -20.51698 -19.86432 -17.76535 -17.74494 -17.07339 -17.01916 -16.79482 -16.52518 -16.31405 -16.16587 -15.67287 -15.35084 -15.28945 -15.12742 -14.76850 -14.62813 -14.38243 -14.11217 -13.83106 -13.71807 -13.47630 -13.33021 -13.25892 -13.11313 -12.90467 -12.86763 -12.72336 -12.56297 -12.43186 -12.17982 -12.12723 -12.08080 -11.93182 -11.88599 -11.49020 -11.41106 -11.34552 -11.10148 -10.96213 -10.84291 -10.24066 -10.12901 -9.99105 -9.13496 -8.45958 -5.94661 1.39524 1.41099 1.52045 1.62981 2.06899 2.28929 2.30853 2.81862 3.20860 3.41032 3.70009 3.89748 3.92212 3.93395 4.03800 4.05754 4.21363 4.28324 4.34835 4.36957 4.41228 4.49506 4.51539 4.54558 4.59141 4.64815 4.66915 4.68521 4.75157 4.77694 4.85304 4.91480 4.96800 5.01140 5.05724 5.08126 5.13452 5.21830 5.24661 5.27359 5.31601 5.37381 5.40935 5.46734 5.50008 5.58645 5.65676 5.93424 6.14378 6.33046 6.57728 6.62155 7.13871 7.26738 7.57669 8.14190 8.71390 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.047227 B = 0.001276 C = 0.001257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.742724 B =21931.847108 C =22272.958496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.720 5.720 5 C 0.115 3.885 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.109 4.109 10 C -0.080 4.080 11 C -0.103 4.103 12 C 0.058 3.942 13 N -0.535 5.535 14 C 0.058 3.942 15 C 0.440 3.560 16 O -0.615 6.615 17 N -0.575 5.575 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.052 3.948 27 C -0.104 4.104 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.419 0.581 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.031 0.969 46 H 0.048 0.952 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.395 0.605 50 H 0.278 0.722 51 H 0.081 0.919 52 H 0.041 0.959 53 H 0.094 0.906 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.789 13.152 4.963 32.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.373 5.373 5 C -0.009 4.009 6 C -0.155 4.155 7 C -0.155 4.155 8 C -0.149 4.149 9 C -0.147 4.147 10 C -0.099 4.099 11 C -0.141 4.141 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.074 4.074 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.213 5.213 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.075 4.075 27 C -0.141 4.141 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.256 0.744 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.127 0.873 48 H 0.080 0.920 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.059 0.941 53 H 0.113 0.887 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -28.770 14.701 4.528 32.624 hybrid contribution 0.905 -1.338 0.512 1.694 sum -27.865 13.363 5.040 31.312 Atomic orbital electron populations 1.21932 0.88139 1.05932 1.06568 1.21681 0.92468 0.82933 0.74217 1.90715 1.72434 1.33634 1.52327 1.46046 1.07451 1.09256 1.74553 1.21363 0.79949 0.98576 1.01041 1.21707 0.95953 0.93958 1.03903 1.21494 0.94489 0.97360 1.02184 1.21561 0.94217 0.96283 1.02808 1.21568 0.96267 0.95073 1.01790 1.21179 0.93668 0.96929 0.98125 1.21562 0.96623 0.94528 1.01411 1.22054 0.99921 0.96162 0.88838 1.61476 1.09981 1.19195 1.35406 1.21721 0.91040 0.91555 1.03036 1.20823 0.89976 0.84211 0.82220 1.90476 1.75757 1.27890 1.55923 1.41938 1.06586 1.07827 1.64914 1.19625 0.82989 0.94318 1.49480 0.90450 1.26005 1.04755 0.93986 0.96330 1.69664 1.38241 0.98046 1.50253 0.85014 0.76858 0.77709 0.78906 1.19761 1.19366 1.19764 1.22256 0.85204 0.98598 1.01432 1.21654 1.00935 0.94026 0.97507 0.86910 0.89750 0.86936 0.74370 0.93013 0.93093 0.90077 0.90021 0.92101 0.92246 0.91017 0.91283 0.92081 0.92656 0.90805 0.91169 0.93112 0.95118 0.93337 0.87252 0.91959 0.77090 0.91304 0.90042 0.94114 0.88734 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.32 71.23 0.74 -0.03 16 2 C 0.50 7.13 7.94 87.65 0.70 7.83 16 3 O -0.61 -15.90 17.09 -3.04 -0.05 -15.95 16 4 N -0.72 -6.60 5.56 -463.06 -2.57 -9.17 16 5 C 0.11 1.36 5.67 86.38 0.49 1.85 16 6 C -0.12 -0.82 5.33 30.60 0.16 -0.65 16 7 C -0.12 -1.16 5.21 30.60 0.16 -1.00 16 8 C -0.11 -1.17 4.98 30.60 0.15 -1.02 16 9 C -0.11 -1.68 4.69 30.60 0.14 -1.54 16 10 C -0.08 -1.54 2.25 -10.71 -0.02 -1.56 16 11 C -0.10 -2.76 5.38 30.65 0.16 -2.60 16 12 C 0.06 1.94 5.12 86.33 0.44 2.38 16 13 N -0.54 -17.81 4.35 -900.94 -3.92 -21.72 16 14 C 0.06 2.07 5.45 85.56 0.47 2.54 16 15 C 0.44 21.58 7.31 87.66 0.64 22.22 16 16 O -0.61 -34.94 14.29 -3.07 -0.04 -34.98 16 17 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 18 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 21 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 22 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 C 0.05 1.22 5.46 86.33 0.47 1.69 16 27 C -0.10 -1.99 5.08 30.65 0.16 -1.83 16 28 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.42 0.77 8.47 -92.71 -0.79 -0.01 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 0.69 6.64 -2.39 -0.02 0.67 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.05 2.06 6.06 -2.39 -0.01 2.05 16 47 H 0.11 3.45 7.98 -2.39 -0.02 3.43 16 48 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16 50 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 51 H 0.08 1.75 8.01 -2.39 -0.02 1.73 16 52 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 53 H 0.09 1.27 6.71 -2.39 -0.02 1.25 16 54 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -78.23 427.73 -0.40 -78.63 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.64 Total: 29.76 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.14 Total: 9.62 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -7.83 Total: -112.53 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.10 Total: -50.93 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -78.23 -0.40 -78.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327498564.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.847 kcal (2) G-P(sol) polarization free energy of solvation -78.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds