Wall clock time and date at job start Wed Apr 1 2020 00:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48501 * 109.47206 * 269.99708 * 3 2 1 5 5 H 1.48498 * 109.47022 * 29.99480 * 3 2 1 6 6 H 1.48504 * 109.47298 * 149.99941 * 3 2 1 7 7 C 1.37882 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00260 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.46955 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99587 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46811 * 180.02562 * 11 10 9 13 13 S 1.80999 * 109.47068 * 180.02562 * 12 11 10 14 14 C 1.76200 * 100.00126 * 180.02562 * 13 12 11 15 15 N 1.31546 * 126.45019 * 0.17896 * 14 13 12 16 16 N 1.28426 * 110.49886 * 180.28543 * 15 14 13 17 17 N 1.28903 * 110.33718 * 359.72800 * 16 15 14 18 18 N 1.35386 * 126.45404 * 180.02562 * 14 13 12 19 19 C 1.46505 * 127.38557 * 359.97438 * 18 14 13 20 20 C 1.52997 * 109.47212 * 269.70875 * 19 18 14 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 18 22 22 C 1.33395 * 125.20149 * 89.99725 * 21 20 19 23 23 C 1.38425 * 114.92071 * 179.97438 * 22 21 20 24 24 C 1.33393 * 114.91923 * 0.02562 * 23 22 21 25 25 S 1.75877 * 125.20456 * 269.69723 * 21 20 19 26 26 H 0.97001 * 119.99698 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46625 * 60.00079 * 9 7 2 28 28 H 1.08996 * 109.47209 * 300.00118 * 9 7 2 29 29 H 1.08994 * 109.47275 * 60.00836 * 11 10 9 30 30 H 1.09004 * 109.47338 * 300.00021 * 11 10 9 31 31 H 1.09001 * 109.47155 * 60.00204 * 12 11 10 32 32 H 1.09000 * 109.46692 * 300.00381 * 12 11 10 33 33 H 1.09002 * 109.47068 * 29.70935 * 19 18 14 34 34 H 1.09001 * 109.47372 * 149.71022 * 19 18 14 35 35 H 1.09002 * 109.47153 * 300.00008 * 20 19 18 36 36 H 1.08998 * 109.47533 * 59.99637 * 20 19 18 37 37 H 1.08001 * 122.53822 * 359.96346 * 22 21 20 38 38 H 1.07994 * 122.53927 * 180.02562 * 23 22 21 39 39 H 1.07997 * 125.19905 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9878 -2.5414 0.0022 11 6 5.4124 -2.6542 0.0022 12 6 5.8068 -4.1325 0.0028 13 16 7.6112 -4.2755 0.0036 14 6 7.7792 -6.0295 0.0034 15 7 6.8004 -6.9083 -0.0006 16 7 7.2694 -8.1039 0.0065 17 7 8.5582 -8.0795 0.0096 18 7 8.9399 -6.7264 0.0043 19 6 10.3017 -6.1864 0.0051 20 6 10.7795 -6.0054 -1.4370 21 6 12.1801 -5.4493 -1.4362 22 6 13.2970 -6.1786 -1.4296 23 6 14.4718 -5.4463 -1.4309 24 6 14.3088 -4.1224 -1.4379 25 16 12.5922 -3.7395 -1.4514 26 1 -0.4850 0.8401 -0.0004 27 1 3.8745 -0.6801 0.8912 28 1 3.8752 -0.6805 -0.8888 29 1 5.8151 -2.1701 0.8918 30 1 5.8151 -2.1714 -0.8882 31 1 5.4041 -4.6164 -0.8870 32 1 5.4040 -4.6157 0.8930 33 1 10.3101 -5.2226 0.5143 34 1 10.9663 -6.8772 0.5240 35 1 10.7712 -6.9691 -1.9462 36 1 10.1150 -5.3146 -1.9560 37 1 13.2856 -7.2585 -1.4236 38 1 15.4463 -5.9117 -1.4265 39 1 15.1087 -3.3968 -1.4403 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338537607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:13 Heat of formation + Delta-G solvation = 102.654721 kcal Electronic energy + Delta-G solvation = -22789.371961 eV Core-core repulsion = 19181.160355 eV Total energy + Delta-G solvation = -3608.211606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.077 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.13734 -38.64518 -37.23453 -36.35033 -32.89634 -32.81538 -32.50531 -31.27651 -28.83597 -27.82678 -25.91627 -24.11411 -23.47579 -23.03030 -22.24550 -21.95020 -19.81179 -18.44371 -17.84969 -17.02619 -16.96110 -16.75029 -16.13025 -16.01954 -15.73781 -15.29954 -14.67592 -14.29235 -14.21658 -13.66257 -13.55677 -13.51331 -13.24750 -13.09211 -12.97697 -12.71256 -12.58709 -12.46489 -11.81206 -11.70838 -11.51192 -11.28315 -11.25730 -11.21549 -10.93389 -10.85387 -10.81686 -10.76060 -9.93972 -9.28462 -9.24372 -9.01827 -8.99136 -8.59165 -8.33843 -6.16986 -4.17284 0.32469 0.39806 0.60246 1.08398 1.47264 1.56139 1.71004 1.97374 2.20978 3.20226 3.27205 3.27954 3.74966 4.07096 4.15558 4.29647 4.33246 4.46215 4.54578 4.57075 4.63959 4.92146 4.95220 5.02642 5.05654 5.13721 5.16959 5.21515 5.23730 5.47928 5.56517 5.64069 5.74585 5.77132 5.89424 5.92568 6.46116 6.87567 7.49404 7.83691 8.14598 8.54684 8.94025 9.40673 10.95758 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.013346 B = 0.002159 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.567496 B =12967.914927 C =14933.231036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.084 0.916 9 C 0.170 3.830 10 O -0.372 6.372 11 C 0.074 3.926 12 C -0.107 4.107 13 S 0.040 5.960 14 C 0.220 3.780 15 N -0.326 5.326 16 N -0.029 5.029 17 N -0.083 5.083 18 N -0.366 5.366 19 C 0.127 3.873 20 C -0.064 4.064 21 C -0.185 4.185 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.210 4.210 25 S 0.116 5.884 26 H 0.267 0.733 27 H 0.007 0.993 28 H 0.002 0.998 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.017 -9.350 -2.048 34.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.102 0.898 9 C 0.095 3.905 10 O -0.291 6.291 11 C -0.006 4.006 12 C -0.256 4.256 13 S 0.265 5.735 14 C -0.165 4.165 15 N -0.182 5.182 16 N -0.025 5.025 17 N -0.070 5.070 18 N -0.166 5.166 19 C 0.004 3.996 20 C -0.104 4.104 21 C -0.303 4.303 22 C -0.158 4.158 23 C -0.168 4.168 24 C -0.346 4.346 25 S 0.380 5.620 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.020 0.980 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 32.200 -8.529 -2.054 33.373 hybrid contribution 1.158 -0.355 -0.015 1.212 sum 33.358 -8.884 -2.069 34.583 Atomic orbital electron populations 1.69869 1.06057 1.27198 1.49864 1.24768 0.94831 0.98763 0.94560 0.86853 0.80336 0.83748 0.78820 1.19855 1.20686 1.19066 1.20855 0.88011 0.95486 1.51720 0.89794 1.20680 0.96375 0.78757 0.94698 1.87949 1.15740 1.30284 1.95139 1.21863 0.86466 0.91603 1.00665 1.23669 0.90165 1.02330 1.09400 1.85597 1.11374 0.85819 1.90692 1.27756 0.85470 1.02666 1.00626 1.75067 1.25117 0.94412 1.23633 1.77907 1.01314 1.14136 1.09109 1.82471 1.08201 0.94094 1.22223 1.51621 1.07526 1.04762 1.52656 1.22146 0.77324 1.01276 0.98849 1.20435 0.91219 1.03162 0.95615 1.24114 0.98035 0.96596 1.11577 1.20210 0.90998 1.01421 1.03144 1.20189 0.99690 0.93025 1.03852 1.25739 0.99277 0.99881 1.09656 1.84568 1.00279 1.05000 1.72124 0.92246 0.97578 0.98021 0.93046 0.93053 0.86981 0.87009 0.87225 0.86680 0.88505 0.89230 0.84044 0.84104 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.52 -15.18 9.99 -34.44 -0.34 -15.52 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.17 4.13 4.76 36.01 0.17 4.30 16 10 O -0.37 -8.14 10.33 -35.23 -0.36 -8.51 16 11 C 0.07 1.15 5.94 37.16 0.22 1.37 16 12 C -0.11 -1.41 5.60 37.16 0.21 -1.21 16 13 S 0.04 0.41 21.78 -107.50 -2.34 -1.93 16 14 C 0.22 2.63 8.15 -89.18 -0.73 1.90 16 15 N -0.33 -4.84 11.57 30.50 0.35 -4.49 16 16 N -0.03 -0.44 13.38 60.35 0.81 0.37 16 17 N -0.08 -1.07 13.93 60.35 0.84 -0.23 16 18 N -0.37 -3.77 3.69 -61.30 -0.23 -4.00 16 19 C 0.13 0.80 6.36 -4.04 -0.03 0.77 16 20 C -0.06 -0.37 6.03 -27.89 -0.17 -0.54 16 21 C -0.19 -1.07 5.76 -36.00 -0.21 -1.28 16 22 C -0.13 -0.68 10.05 -41.21 -0.41 -1.09 16 23 C -0.14 -0.69 10.18 -41.21 -0.42 -1.11 16 24 C -0.21 -1.08 11.23 29.04 0.33 -0.76 16 25 S 0.12 0.69 23.33 -107.50 -2.51 -1.82 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.01 0.15 7.20 -51.93 -0.37 -0.22 16 28 H 0.00 0.05 7.57 -51.93 -0.39 -0.34 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.11 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.11 1.54 8.14 -51.92 -0.42 1.12 16 33 H 0.11 0.57 7.84 -51.93 -0.41 0.16 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -33.22 369.85 -8.23 -41.45 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.99 Total: -5.01 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.48 Total: -11.16 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 2.55 Total: -34.64 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.36 Total: -8.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -4.85 Total: -3.75 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.22 -8.23 -41.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338537607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.107 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds