Wall clock time and date at job start Tue Mar 31 2020 23:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35649 * 116.99585 * 2 1 4 4 C 1.39121 * 119.89013 * 359.72477 * 3 2 1 5 5 C 1.36550 * 120.25739 * 180.28439 * 4 3 2 6 6 C 1.40123 * 120.02874 * 359.97438 * 5 4 3 7 7 C 1.47070 * 120.10885 * 180.02562 * 6 5 4 8 8 O 1.21409 * 120.00016 * 353.65523 * 7 6 5 9 9 C 1.49257 * 119.99506 * 173.65441 * 7 6 5 10 10 O 1.21370 * 120.00202 * 5.28422 * 9 7 6 11 11 N 1.34782 * 119.99402 * 185.27592 * 9 7 6 12 12 C 1.46501 * 119.99419 * 180.02562 * 11 9 7 13 13 C 1.50704 * 109.46754 * 180.02562 * 12 11 9 14 14 O 1.21290 * 120.00320 * 0.02562 * 13 12 11 15 15 N 1.34783 * 119.99869 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99746 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00353 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99726 * 180.02562 * 16 15 13 19 19 N 1.31410 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99890 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47040 * 60.00267 * 20 18 16 22 22 H 1.48499 * 109.47207 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47218 * 300.00240 * 20 18 16 24 24 C 1.40128 * 119.77689 * 0.02562 * 6 5 4 25 25 C 1.37683 * 119.74503 * 359.97438 * 24 6 5 26 26 Cl 1.73605 * 120.01086 * 179.97438 * 25 24 6 27 27 H 1.09005 * 109.47238 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47482 * 299.99583 * 1 2 3 29 29 H 1.09000 * 109.47430 * 60.00571 * 1 2 3 30 30 H 1.07997 * 119.87524 * 0.25104 * 4 3 2 31 31 H 1.08003 * 119.98942 * 179.97438 * 5 4 3 32 32 H 0.96996 * 120.00348 * 0.02562 * 11 9 7 33 33 H 1.08999 * 109.47384 * 300.00236 * 12 11 9 34 34 H 1.08999 * 109.47529 * 60.00125 * 12 11 9 35 35 H 0.96995 * 119.99561 * 0.02562 * 15 13 12 36 36 H 0.97004 * 119.99805 * 180.02562 * 19 18 16 37 37 H 1.07999 * 120.12393 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2848 2.3739 -0.0058 5 6 1.8968 3.5946 -0.0117 6 6 3.2956 3.6777 -0.0114 7 6 3.9566 4.9914 -0.0172 8 8 3.2960 6.0028 -0.1384 9 6 5.4396 5.0812 0.1260 10 8 6.1092 4.0693 0.1508 11 7 6.0350 6.2861 0.2277 12 6 7.4906 6.3743 0.3677 13 6 7.8994 7.8217 0.4617 14 8 7.0577 8.6938 0.4166 15 7 9.2004 8.1472 0.5968 16 6 9.5723 9.4639 0.6817 17 1 8.8228 10.2405 0.6408 18 6 10.9135 9.7994 0.8205 19 7 11.8255 8.8546 0.8698 20 14 11.4203 11.5936 0.9370 21 1 10.7708 12.2157 2.1187 22 1 12.8958 11.6831 1.0783 23 1 10.9971 12.3085 -0.2939 24 6 4.0624 2.5048 -0.0056 25 6 3.4356 1.2789 0.0004 26 17 4.3789 -0.1785 0.0069 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.2065 2.3129 -0.0062 31 1 1.3026 4.4964 -0.0166 32 1 5.4997 7.0948 0.2082 33 1 7.8012 5.8499 1.2714 34 1 7.9674 5.9172 -0.4994 35 1 9.8734 7.4497 0.6331 36 1 12.7618 9.0888 0.9670 37 1 5.1408 2.5624 -0.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344122724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:16 Heat of formation + Delta-G solvation = -110.549122 kcal Electronic energy + Delta-G solvation = -25399.359872 eV Core-core repulsion = 21168.980630 eV Total energy + Delta-G solvation = -4230.379242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08921 -40.25360 -38.82606 -38.06244 -37.68199 -36.56661 -34.66558 -33.82898 -31.47359 -31.43423 -31.01894 -28.43515 -27.96197 -25.69158 -24.40072 -23.05830 -22.33006 -20.25602 -19.65420 -18.73525 -18.35100 -17.87208 -17.11438 -16.59928 -16.38086 -15.90821 -15.77590 -15.49155 -15.11427 -14.86405 -14.64975 -14.47638 -14.33387 -13.98248 -13.69201 -13.51054 -13.34379 -13.28288 -12.65126 -12.30012 -12.06093 -11.91776 -11.78133 -11.65861 -11.53786 -11.28271 -11.13959 -11.12959 -10.52672 -10.34232 -9.66576 -9.47736 -9.36669 -9.10067 -8.70247 -8.68093 -8.14498 -6.55027 -3.97183 0.05828 0.80584 1.38169 1.88930 2.59805 2.70890 2.83347 3.11785 3.20353 3.24341 3.39140 3.67976 4.03334 4.15143 4.24289 4.33515 4.60086 4.63653 4.64816 4.76238 4.79342 4.97375 5.00041 5.12822 5.37574 5.47618 5.67001 5.72732 5.81279 5.83420 5.95351 6.11201 6.46907 6.67299 6.76816 7.42876 7.47825 7.85942 8.02664 8.40261 9.00638 9.33792 9.81571 10.61533 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.027958 B = 0.001960 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.274940 B =14285.520587 C =15251.713454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.300 6.300 3 C 0.174 3.826 4 C -0.219 4.219 5 C -0.008 4.008 6 C -0.195 4.195 7 C 0.399 3.601 8 O -0.418 6.418 9 C 0.483 3.517 10 O -0.519 6.519 11 N -0.673 5.673 12 C 0.103 3.897 13 C 0.424 3.576 14 O -0.594 6.594 15 N -0.546 5.546 16 C -0.307 4.307 17 H 0.106 0.894 18 C 0.027 3.973 19 N -0.893 5.893 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.016 4.016 25 C -0.092 4.092 26 Cl -0.049 7.049 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.422 0.578 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 -18.270 -1.611 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.211 6.211 3 C 0.127 3.873 4 C -0.238 4.238 5 C -0.027 4.027 6 C -0.197 4.197 7 C 0.272 3.728 8 O -0.290 6.290 9 C 0.265 3.735 10 O -0.398 6.398 11 N -0.327 5.327 12 C -0.024 4.024 13 C 0.210 3.790 14 O -0.481 6.481 15 N -0.180 5.180 16 C -0.436 4.436 17 H 0.124 0.876 18 C -0.176 4.176 19 N -0.533 5.533 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.035 4.035 25 C -0.119 4.119 26 Cl -0.020 7.020 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.262 0.738 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -20.096 -18.131 -1.662 27.117 hybrid contribution 0.346 0.733 0.096 0.816 sum -19.750 -17.398 -1.567 26.366 Atomic orbital electron populations 1.23216 0.77502 1.04661 1.01875 1.86134 1.22061 1.25957 1.86987 1.19202 0.90719 0.85233 0.92194 1.20883 1.00629 0.91246 1.11059 1.21026 0.93155 0.98165 0.90345 1.19886 0.93828 0.93192 1.12830 1.22229 0.88820 0.88657 0.73094 1.90623 1.67162 1.37837 1.33374 1.20558 0.89532 0.84241 0.79136 1.90511 1.65133 1.34273 1.49903 1.45694 1.08787 1.09040 1.69222 1.21149 0.79974 0.97535 1.03724 1.19654 0.84130 0.89119 0.86129 1.90529 1.50411 1.49644 1.57498 1.41769 1.05396 1.09100 1.61781 1.19694 0.92689 0.83361 1.47842 0.87644 1.25336 0.95390 1.00258 0.96655 1.69603 1.01992 1.33100 1.48637 0.85856 0.77286 0.81547 0.79197 1.19739 1.20827 1.19742 1.22575 1.04193 0.88201 0.88480 1.20189 0.88503 0.89646 1.13566 1.98379 1.71580 1.34868 1.97166 0.87646 0.92046 0.92060 0.83831 0.83793 0.73821 0.88992 0.88993 0.76981 0.91471 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.80 101.05 0.99 1.08 16 2 O -0.30 -2.54 9.94 -18.65 -0.19 -2.72 16 3 C 0.17 1.66 6.70 -38.87 -0.26 1.40 16 4 C -0.22 -1.73 8.96 -39.86 -0.36 -2.09 16 5 C -0.01 -0.08 9.54 -39.48 -0.38 -0.46 16 6 C -0.20 -2.26 5.88 -104.90 -0.62 -2.88 16 7 C 0.40 5.33 7.16 -31.42 -0.22 5.11 16 8 O -0.42 -6.09 16.49 5.45 0.09 -6.00 16 9 C 0.48 7.23 7.84 -11.67 -0.09 7.14 16 10 O -0.52 -8.16 13.41 5.48 0.07 -8.09 16 11 N -0.67 -11.05 5.52 -61.97 -0.34 -11.39 16 12 C 0.10 1.79 6.15 -5.19 -0.03 1.76 16 13 C 0.42 9.49 7.85 -10.98 -0.09 9.41 16 14 O -0.59 -15.14 15.24 5.55 0.08 -15.06 16 15 N -0.55 -13.20 5.29 -10.96 -0.06 -13.26 16 16 C -0.31 -8.21 9.68 -14.93 -0.14 -8.35 16 17 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.89 -23.44 13.05 55.50 0.72 -22.72 16 20 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.02 -0.19 9.07 -39.08 -0.35 -0.55 16 25 C -0.09 -1.02 6.33 -39.40 -0.25 -1.27 16 26 Cl -0.05 -0.54 28.50 -51.86 -1.48 -2.02 16 27 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.06 0.19 7.64 -51.93 -0.40 -0.21 16 30 H 0.14 0.69 6.27 -52.49 -0.33 0.36 16 31 H 0.14 1.15 7.66 -52.48 -0.40 0.75 16 32 H 0.42 7.29 6.92 -40.82 -0.28 7.01 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.40 9.13 7.90 -40.82 -0.32 8.81 16 36 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.19 2.45 4.84 -52.53 -0.25 2.19 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -30.76 347.55 -5.94 -36.70 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -3.16 Total: 13.11 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -1.90 Total: 10.90 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.32 Total: -47.37 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: 0.06 Total: -31.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.48 Total: -2.02 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.76 -5.94 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344122724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.847 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds