Wall clock time and date at job start Tue Mar 31 2020 23:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00130 * 2 1 4 4 C 1.50697 * 109.46897 * 276.81798 * 3 2 1 5 5 H 1.07992 * 120.00282 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99847 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00081 * 179.97438 * 6 4 3 8 8 Si 1.86807 * 120.00062 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47241 * 89.99439 * 8 6 4 10 10 H 1.48496 * 109.46912 * 209.99664 * 8 6 4 11 11 H 1.48495 * 109.46979 * 329.99752 * 8 6 4 12 12 S 1.65604 * 119.99796 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40086 * 147.39071 * 12 2 1 14 14 O 1.42092 * 106.40234 * 14.47237 * 12 2 1 15 15 N 1.65598 * 107.21972 * 260.92780 * 12 2 1 16 16 C 1.46374 * 119.65181 * 266.35579 * 15 12 2 17 17 C 1.53236 * 109.48941 * 114.88933 * 16 15 12 18 18 S 1.81739 * 108.79931 * 57.65502 * 17 16 15 19 19 O 1.42098 * 109.46918 * 61.50226 * 18 17 16 20 20 C 1.81735 * 102.30648 * 305.46328 * 18 17 16 21 21 C 1.46386 * 119.64233 * 86.33224 * 15 12 2 22 22 H 1.09009 * 109.46431 * 125.10773 * 21 15 12 23 23 C 1.50692 * 109.46995 * 5.11833 * 21 15 12 24 24 O 1.20826 * 120.00202 * 288.25520 * 23 21 15 25 25 O 1.34233 * 120.00028 * 108.25427 * 23 21 15 26 26 H 1.08996 * 109.47159 * 270.00175 * 1 2 3 27 27 H 1.08996 * 109.46683 * 30.00573 * 1 2 3 28 28 H 1.09002 * 109.46935 * 150.00382 * 1 2 3 29 29 H 1.09004 * 109.47026 * 36.81927 * 3 2 1 30 30 H 1.09004 * 109.47278 * 156.81772 * 3 2 1 31 31 H 0.96997 * 119.99486 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46748 * 354.87754 * 16 15 12 33 33 H 1.08995 * 109.46761 * 234.89316 * 16 15 12 34 34 H 1.08997 * 109.58332 * 177.45540 * 17 16 15 35 35 H 1.09004 * 109.58196 * 297.72598 * 17 16 15 36 36 H 1.09008 * 109.58485 * 174.33272 * 20 18 17 37 37 H 1.09002 * 109.58448 * 294.74068 * 20 18 17 38 38 H 0.96700 * 116.99809 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3026 1.7880 -1.4108 5 1 1.8677 1.2288 -2.2258 6 6 2.9541 2.9772 -1.6609 7 7 3.0462 3.4302 -2.8921 8 14 3.7070 3.9442 -0.2511 9 1 5.1106 3.5057 -0.0440 10 1 3.6839 5.3929 -0.5766 11 1 2.9251 3.7027 0.9880 12 16 2.2930 -1.4342 0.0006 13 8 3.4881 -1.2079 -0.7341 14 8 1.3505 -2.4417 -0.3396 15 7 2.7541 -1.7334 1.5627 16 6 4.0767 -1.3063 2.0218 17 6 3.9203 -0.2309 3.1021 18 16 2.9228 -0.9078 4.4622 19 8 3.5922 -2.0254 5.0298 20 6 1.4253 -1.4719 3.6007 21 6 1.8343 -2.4217 2.4699 22 1 2.3275 -3.2976 2.8917 23 6 0.6077 -2.8540 1.7088 24 8 -0.1977 -2.0309 1.3430 25 8 0.4097 -4.1535 1.4370 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6667 1.9947 0.6159 30 1 3.1973 1.1110 0.4046 31 1 3.5049 4.2666 -3.0680 32 1 4.6386 -0.8983 1.1816 33 1 4.6114 -2.1614 2.4352 34 1 4.9028 0.0558 3.4771 35 1 3.4217 0.6415 2.6797 36 1 0.7763 -1.9967 4.3019 37 1 0.8982 -0.6135 3.1842 38 1 -0.3917 -4.3824 0.9466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547928708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:55 Heat of formation + Delta-G solvation = -198.926571 kcal Electronic energy + Delta-G solvation = -28403.603243 eV Core-core repulsion = 24306.879325 eV Total energy + Delta-G solvation = -4096.723918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.069 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61950 -38.75180 -38.31811 -37.38243 -37.13055 -36.87113 -36.76995 -34.47229 -33.23436 -30.55624 -30.23260 -26.84007 -26.47976 -24.20350 -23.75494 -22.61689 -20.41256 -19.71650 -19.12486 -18.71476 -18.62412 -18.27780 -17.86575 -17.20284 -16.73828 -16.23584 -16.19471 -16.17014 -15.87372 -15.37161 -15.28315 -14.82526 -14.63838 -14.47962 -14.23185 -14.10252 -13.85695 -13.59701 -13.41043 -13.22190 -13.13462 -12.97858 -12.93311 -12.75276 -12.54634 -12.35279 -12.23012 -12.00401 -11.88630 -11.66054 -11.60622 -11.02214 -10.76506 -10.72595 -9.74187 -9.23923 -8.24985 -6.32648 -0.69423 0.66102 0.99865 1.41791 1.42263 1.47848 1.56804 1.77904 2.00298 2.35975 2.41566 2.85403 3.05113 3.10127 3.39012 3.46881 3.83299 3.87175 4.09138 4.20840 4.24806 4.37487 4.41429 4.64273 4.76371 4.80214 4.90501 5.00060 5.08577 5.13124 5.16105 5.37232 5.50516 5.74699 5.77182 6.33596 6.70780 6.95369 7.30554 8.92969 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.006191 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.873856 B = 4521.255443 C = 5710.870010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.985 5.985 3 C 0.233 3.767 4 C -0.546 4.546 5 H 0.017 0.983 6 C 0.000 4.000 7 N -0.954 5.954 8 Si 0.943 3.057 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.205 1.205 12 S 2.782 3.218 13 O -0.999 6.999 14 O -0.992 6.992 15 N -1.000 6.000 16 C 0.108 3.892 17 C -0.474 4.474 18 S 1.337 4.663 19 O -0.897 6.897 20 C -0.457 4.457 21 C 0.162 3.838 22 H 0.115 0.885 23 C 0.477 3.523 24 O -0.509 6.509 25 O -0.508 6.508 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -6.644 21.838 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.827 5.827 3 C 0.108 3.892 4 C -0.585 4.585 5 H 0.035 0.965 6 C -0.197 4.197 7 N -0.595 5.595 8 Si 0.763 3.237 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.127 1.127 12 S 2.792 3.208 13 O -0.983 6.983 14 O -0.976 6.976 15 N -0.842 5.842 16 C -0.017 4.017 17 C -0.612 4.612 18 S 1.534 4.466 19 O -0.893 6.893 20 C -0.594 4.594 21 C 0.053 3.947 22 H 0.133 0.867 23 C 0.318 3.682 24 O -0.399 6.399 25 O -0.321 6.321 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -3.370 -6.841 22.084 23.364 hybrid contribution 0.289 -1.124 -2.542 2.794 sum -3.081 -7.965 19.542 21.327 Atomic orbital electron populations 1.21518 0.77134 1.01479 1.03226 1.57183 1.15896 1.20939 1.88674 1.19358 0.92014 0.82291 0.95502 1.21702 1.36282 1.06664 0.93851 0.96453 1.26112 0.95922 0.98511 0.99172 1.70108 1.44514 1.22284 1.22559 0.85804 0.80029 0.77142 0.80698 1.19063 1.21150 1.12676 1.01773 0.72249 0.73228 0.73522 1.93582 1.49182 1.86145 1.69376 1.93422 1.63601 1.58533 1.82039 1.58128 1.24026 1.71676 1.30378 1.21493 0.81437 0.98523 1.00198 1.28254 1.15128 1.06316 1.11467 1.69993 0.86241 1.02417 0.87923 1.93010 1.72893 1.56936 1.66412 1.28380 1.19111 1.07391 1.04523 1.20426 0.87095 0.97132 0.90001 0.86667 1.22928 0.88006 0.81423 0.75856 1.90760 1.47070 1.52621 1.49400 1.84330 1.50090 1.26965 1.70709 0.89252 0.92299 0.92414 0.91255 0.94190 0.92482 0.88518 0.89177 0.83196 0.83847 0.83124 0.82808 0.71144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.85 8.75 127.77 1.12 4.96 16 2 N -0.98 -38.20 3.23 -543.23 -1.75 -39.96 16 3 C 0.23 9.81 4.17 85.63 0.36 10.17 16 4 C -0.55 -30.92 9.92 25.60 0.25 -30.67 16 5 H 0.02 1.14 8.06 -2.91 -0.02 1.11 16 6 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 7 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 8 Si 0.94 39.06 27.47 68.60 1.88 40.94 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.29 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.21 -6.63 6.54 99.48 0.65 -5.98 16 12 S 2.78 108.18 5.53 -56.49 -0.31 107.87 16 13 O -1.00 -47.78 15.81 -128.00 -2.02 -49.81 16 14 O -0.99 -39.97 11.88 -115.83 -1.38 -41.35 16 15 N -1.00 -27.86 3.15 -497.01 -1.57 -29.43 16 16 C 0.11 2.61 6.27 86.48 0.54 3.15 16 17 C -0.47 -7.21 6.65 72.06 0.48 -6.73 16 18 S 1.34 15.84 13.71 -56.49 -0.77 15.07 16 19 O -0.90 -21.21 18.14 -148.98 -2.70 -23.91 16 20 C -0.46 -6.34 5.77 72.06 0.42 -5.93 16 21 C 0.16 3.71 3.21 44.34 0.14 3.85 16 22 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 23 C 0.48 12.65 4.36 71.23 0.31 12.96 16 24 O -0.51 -14.67 10.75 29.53 0.32 -14.36 16 25 O -0.51 -12.33 13.04 -45.25 -0.59 -12.92 16 26 H 0.09 2.48 6.70 -2.39 -0.02 2.46 16 27 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 28 H 0.06 2.12 6.21 -2.39 -0.01 2.11 16 29 H 0.07 2.51 7.18 -2.38 -0.02 2.49 16 30 H 0.04 1.57 6.98 -2.38 -0.02 1.55 16 31 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.10 2.73 6.72 -2.39 -0.02 2.72 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 34 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 1.89 7.89 -2.39 -0.02 1.87 16 36 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.15 1.80 7.88 -2.39 -0.02 1.78 16 38 H 0.43 7.42 9.10 -74.06 -0.67 6.75 16 Total: -1.00 -91.01 327.66 -4.14 -95.15 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.38 Total: 20.03 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.08 Total: -7.78 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -3.02 Total: -128.93 kcal Atomic # 8 Polarization: -135.96 SS G_CDS: -6.38 Total: -142.34 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.88 Total: 40.94 kcal Atomic # 16 Polarization: 124.02 SS G_CDS: -1.09 Total: 122.93 kcal Total: -91.01 -4.14 -95.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547928708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.781 kcal (2) G-P(sol) polarization free energy of solvation -91.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds