Wall clock time and date at job start Wed Apr 1 2020 00:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99295 * 2 1 4 4 H 1.48498 * 109.47307 * 269.99557 * 3 2 1 5 5 H 1.48502 * 109.47675 * 30.00000 * 3 2 1 6 6 H 1.48502 * 109.47009 * 150.00220 * 3 2 1 7 7 C 1.38804 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00345 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46862 * 125.33578 * 0.02913 * 9 7 2 11 11 C 1.54469 * 106.65415 * 195.40370 * 10 9 7 12 12 C 1.53377 * 102.54150 * 332.26003 * 11 10 9 13 13 H 1.09000 * 105.68324 * 278.45929 * 12 11 10 14 14 C 1.49270 * 114.29810 * 161.96903 * 12 11 10 15 15 N 1.45646 * 114.67855 * 259.01184 * 14 12 11 16 16 C 1.34774 * 120.30658 * 143.49876 * 15 14 12 17 17 O 1.21700 * 120.00106 * 177.39796 * 16 15 14 18 18 C 1.46576 * 119.99827 * 357.40163 * 16 15 14 19 19 C 1.36676 * 125.44945 * 211.28227 * 18 16 15 20 20 C 1.37528 * 113.28716 * 179.97438 * 19 18 16 21 21 Cl 1.73602 * 122.46024 * 180.02562 * 20 19 18 22 22 C 1.33873 * 115.07910 * 0.02562 * 20 19 18 23 23 S 1.70614 * 110.96064 * 359.72467 * 22 20 19 24 24 C 1.46827 * 119.38900 * 323.52439 * 15 14 12 25 25 C 1.52966 * 107.39318 * 55.01616 * 24 15 14 26 26 C 1.48010 * 125.33691 * 179.71675 * 9 7 2 27 27 H 1.09004 * 110.21418 * 303.20344 * 26 9 7 28 28 H 0.97004 * 120.00754 * 0.02562 * 1 2 3 29 29 H 1.09002 * 110.02094 * 314.70278 * 10 9 7 30 30 H 1.09001 * 110.02581 * 76.10253 * 10 9 7 31 31 H 1.09005 * 110.79484 * 90.52364 * 11 10 9 32 32 H 1.09006 * 110.79318 * 213.99461 * 11 10 9 33 33 H 1.09010 * 108.43771 * 20.35568 * 14 12 11 34 34 H 1.09000 * 108.44466 * 137.65764 * 14 12 11 35 35 H 1.08005 * 123.35791 * 359.97438 * 19 18 16 36 36 H 1.07998 * 124.52061 * 179.97438 * 22 20 19 37 37 H 1.09007 * 109.87009 * 174.48722 * 24 15 14 38 38 H 1.09003 * 109.87108 * 295.46849 * 24 15 14 39 39 H 1.09002 * 109.38073 * 58.68401 * 25 24 15 40 40 H 1.09001 * 109.38128 * 178.46551 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1365 -2.5247 0.0016 11 6 -0.4445 -3.9861 0.3961 12 6 0.8044 -4.7324 -0.0894 13 1 0.6533 -4.8968 -1.1563 14 6 0.9888 -6.0825 0.5199 15 7 1.9664 -6.1347 1.5982 16 6 1.7625 -6.9357 2.6628 17 8 2.6049 -7.0109 3.5379 18 6 0.5263 -7.7163 2.7666 19 6 -0.0979 -8.0613 3.9325 20 6 -1.2437 -8.7969 3.7388 21 17 -2.2233 -9.3600 5.0568 22 6 -1.5481 -9.0468 2.4593 23 16 -0.3950 -8.3526 1.4108 24 6 3.1757 -5.3063 1.5152 25 6 2.7252 -3.8587 1.3118 26 6 1.9434 -3.7330 -0.0037 27 1 2.6057 -3.8400 -0.8629 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5752 -1.8415 0.7289 30 1 -0.5310 -2.3154 -0.9927 31 1 -0.5561 -4.0801 1.4763 32 1 -1.3352 -4.3463 -0.1188 33 1 0.0278 -6.4193 0.9090 34 1 1.3010 -6.7742 -0.2625 35 1 0.2718 -7.7840 4.9087 36 1 -2.4109 -9.6091 2.1341 37 1 3.7466 -5.3903 2.4400 38 1 3.7874 -5.6271 0.6719 39 1 2.0883 -3.5578 2.1437 40 1 3.6001 -3.2097 1.2729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036832913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:53 Heat of formation + Delta-G solvation = 31.693478 kcal Electronic energy + Delta-G solvation = -25343.746407 eV Core-core repulsion = 21698.121233 eV Total energy + Delta-G solvation = -3645.625174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.42672 -38.72991 -37.92914 -36.21830 -35.41194 -32.78027 -32.23855 -30.18978 -29.44403 -28.26060 -25.88175 -24.77354 -23.66517 -22.80385 -21.04275 -20.32221 -19.57623 -18.79980 -17.82056 -16.99429 -16.43102 -16.35166 -15.62053 -15.43641 -14.84897 -14.65252 -13.99021 -13.85647 -13.75152 -13.53644 -13.46259 -13.03786 -12.89952 -12.42572 -12.30951 -12.21332 -11.68195 -11.55643 -11.48051 -11.39123 -11.09902 -10.97312 -10.85891 -10.75399 -10.19146 -10.17577 -10.09757 -9.85047 -9.63760 -9.54887 -9.25013 -8.69118 -8.61949 -8.51756 -6.88066 -5.71303 -3.08948 0.18476 0.95934 1.25574 1.93351 2.22421 2.83677 3.10088 3.38008 3.43482 3.45155 4.31377 4.44767 4.64639 4.69080 4.91079 5.06482 5.09652 5.28984 5.33214 5.42597 5.48472 5.56175 5.65731 5.70818 5.76502 5.82727 5.88763 5.93437 6.16102 6.25131 6.32222 6.46833 6.56819 6.62206 6.84257 7.03972 7.32975 7.49737 7.60794 7.81503 8.03202 8.27512 9.19152 9.79128 10.42921 11.36169 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003003 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.161422 B = 9322.755441 C = 9705.537868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.167 3.833 11 C -0.137 4.137 12 C -0.106 4.106 13 H 0.069 0.931 14 C 0.117 3.883 15 N -0.592 5.592 16 C 0.589 3.411 17 O -0.529 6.529 18 C -0.251 4.251 19 C -0.058 4.058 20 C -0.057 4.057 21 Cl -0.051 7.051 22 C -0.253 4.253 23 S 0.273 5.727 24 C 0.112 3.888 25 C -0.139 4.139 26 C 0.173 3.827 27 H 0.043 0.957 28 H 0.252 0.748 29 H 0.084 0.916 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.161 0.839 36 H 0.177 0.823 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -19.693 2.202 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.042 3.958 11 C -0.175 4.175 12 C -0.126 4.126 13 H 0.087 0.913 14 C -0.008 4.008 15 N -0.324 5.324 16 C 0.376 3.624 17 O -0.408 6.408 18 C -0.372 4.372 19 C -0.091 4.091 20 C -0.097 4.097 21 Cl -0.023 7.023 22 C -0.391 4.391 23 S 0.541 5.459 24 C -0.010 4.010 25 C -0.179 4.179 26 C 0.066 3.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.703 -19.490 1.164 19.711 hybrid contribution -0.161 0.748 1.545 1.724 sum -2.864 -18.742 2.709 19.152 Atomic orbital electron populations 1.69915 1.04869 1.24894 1.57273 1.24780 0.95708 0.97664 1.02316 0.86120 0.78603 0.83520 0.77523 1.21676 1.21712 1.20678 1.19007 0.90471 0.82269 1.43415 0.90463 1.44699 1.01486 0.99349 1.86857 1.21387 0.84510 0.89997 0.99901 1.22709 0.95243 0.99366 1.00225 1.20664 0.98260 0.93097 1.00539 0.91258 1.20882 0.92168 0.98240 0.89527 1.47639 1.22392 1.42269 1.20137 1.16852 0.84522 0.79180 0.81857 1.90827 1.44379 1.66134 1.39445 1.24548 1.03314 1.11574 0.97745 1.20426 0.92824 0.96274 0.99551 1.19501 0.96170 1.04775 0.89224 1.98370 1.69236 1.87965 1.46722 1.25551 1.08083 1.08338 0.97144 1.83509 1.13826 1.42481 1.06131 1.21783 0.85458 0.90913 1.02810 1.22518 1.01466 0.93198 1.00754 1.20551 0.92253 0.86060 0.94572 0.93913 0.93781 0.89825 0.96320 0.92534 0.91934 0.90218 0.91733 0.82183 0.80527 0.89096 0.91246 0.91273 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.22 55.49 0.57 -25.73 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.93 9.83 -15.06 -0.15 -6.07 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.32 3.04 -163.72 -0.50 -14.82 16 10 C 0.17 3.85 5.54 -3.07 -0.02 3.83 16 11 C -0.14 -2.38 6.37 -25.77 -0.16 -2.54 16 12 C -0.11 -1.64 2.45 -92.89 -0.23 -1.87 16 13 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 14 C 0.12 1.47 4.77 -6.34 -0.03 1.44 16 15 N -0.59 -8.44 3.00 -177.91 -0.53 -8.98 16 16 C 0.59 8.86 7.58 -12.90 -0.10 8.76 16 17 O -0.53 -9.49 16.38 5.19 0.08 -9.41 16 18 C -0.25 -3.12 5.78 -36.79 -0.21 -3.33 16 19 C -0.06 -0.69 10.02 -40.41 -0.41 -1.09 16 20 C -0.06 -0.59 6.25 -41.37 -0.26 -0.85 16 21 Cl -0.05 -0.50 29.10 -51.86 -1.51 -2.01 16 22 C -0.25 -2.21 10.77 29.20 0.31 -1.90 16 23 S 0.27 2.44 19.08 -107.50 -2.05 0.39 16 24 C 0.11 1.64 6.42 -3.88 -0.02 1.62 16 25 C -0.14 -2.44 5.19 -26.47 -0.14 -2.58 16 26 C 0.17 3.25 3.43 -67.44 -0.23 3.02 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.08 2.21 6.41 -51.93 -0.33 1.88 16 30 H 0.02 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.92 3.91 -26.47 -0.10 0.82 16 34 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 35 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.31 8.11 -51.93 -0.42 0.88 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -30.54 344.28 -10.50 -41.04 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.99 Total: -0.44 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.74 Total: -1.90 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.46 Total: -49.52 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.05 Total: 0.39 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.54 -10.50 -41.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036832913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.733 kcal (2) G-P(sol) polarization free energy of solvation -30.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds