Wall clock time and date at job start Tue Mar 31 2020 23:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34777 * 119.99718 * 2 1 4 4 O 1.21704 * 120.00123 * 186.11061 * 3 2 1 5 5 C 1.46581 * 120.00320 * 6.10667 * 3 2 1 6 6 C 1.36644 * 125.46459 * 186.84443 * 5 3 2 7 7 C 1.37471 * 113.30240 * 180.02562 * 6 5 3 8 8 C 1.33817 * 115.10116 * 359.97438 * 7 6 5 9 9 S 1.70619 * 110.95169 * 359.72358 * 8 7 6 10 10 C 1.46497 * 120.00085 * 179.97438 * 2 1 3 11 11 C 1.53491 * 114.20664 * 299.99689 * 10 2 1 12 12 N 1.47069 * 87.98604 * 87.71832 * 11 10 2 13 13 C 1.34779 * 136.06238 * 207.08481 * 12 11 10 14 14 O 1.21280 * 119.99683 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00131 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47195 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99962 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00075 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99834 * 179.72392 * 17 16 15 20 20 N 1.31630 * 119.99930 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99863 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47128 * 89.99818 * 21 19 17 23 23 H 1.48500 * 109.46964 * 209.99667 * 21 19 17 24 24 H 1.48495 * 109.47172 * 330.00076 * 21 19 17 25 25 C 1.47076 * 87.88289 * 27.34347 * 12 11 10 26 26 H 1.08997 * 109.47000 * 275.91744 * 1 2 3 27 27 H 1.09001 * 109.47429 * 35.91667 * 1 2 3 28 28 H 1.09001 * 109.46918 * 155.91654 * 1 2 3 29 29 H 1.08003 * 123.34717 * 359.97438 * 6 5 3 30 30 H 1.08000 * 122.44941 * 180.02562 * 7 6 5 31 31 H 1.07996 * 124.52340 * 180.02562 * 8 7 6 32 32 H 1.09001 * 113.27985 * 166.93300 * 10 2 1 33 33 H 1.09000 * 113.46913 * 332.93783 * 11 10 2 34 34 H 1.08999 * 113.46752 * 202.49409 * 11 10 2 35 35 H 1.09005 * 109.47413 * 60.00345 * 15 13 12 36 36 H 1.08995 * 109.47462 * 300.00276 * 15 13 12 37 37 H 0.97001 * 120.00041 * 180.02562 * 20 19 17 38 38 H 1.08991 * 113.47036 * 87.43672 * 25 12 11 39 39 H 1.09000 * 113.46723 * 217.88135 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3507 1.1703 -0.1122 5 6 1.4122 2.4331 0.1350 6 6 1.9612 3.6788 0.0174 7 6 1.0500 4.6933 0.1914 8 6 -0.2025 4.2945 0.4423 9 16 -0.3073 2.5917 0.4665 10 6 2.1975 -1.2687 0.0006 11 6 1.9061 -2.1631 1.2134 12 7 0.7773 -2.7291 0.4594 13 6 -0.4051 -3.2995 0.7645 14 8 -0.7317 -3.4345 1.9247 15 6 -1.3217 -3.7684 -0.3358 16 16 -2.8178 -4.4842 0.3892 17 6 -3.6834 -4.9346 -1.0779 18 1 -3.2445 -4.7396 -2.0452 19 6 -4.9266 -5.5457 -0.9902 20 7 -5.5731 -5.8827 -2.0862 21 14 -5.6822 -5.8900 0.6832 22 1 -6.5011 -4.7254 1.1055 23 1 -6.5438 -7.0964 0.5984 24 1 -4.6022 -6.1216 1.6757 25 6 1.5095 -2.4047 -0.7742 26 1 -0.3633 0.1059 1.0222 27 1 -0.3634 0.8323 -0.6028 28 1 -0.3633 -0.9382 -0.4194 29 1 3.0072 3.8494 -0.1907 30 1 1.3247 5.7360 0.1292 31 1 -1.0366 4.9615 0.6029 32 1 3.2576 -1.1542 -0.2259 33 1 1.6007 -1.6069 2.0996 34 1 2.6958 -2.8855 1.4198 35 1 -0.8127 -4.5226 -0.9361 36 1 -1.5926 -2.9230 -0.9681 37 1 -6.4420 -6.3094 -2.0249 38 1 2.1948 -3.1905 -1.0917 39 1 0.8663 -2.0541 -1.5813 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358717455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:20 Heat of formation + Delta-G solvation = 26.278144 kcal Electronic energy + Delta-G solvation = -24281.819897 eV Core-core repulsion = 20638.003603 eV Total energy + Delta-G solvation = -3643.816294 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23910 -39.54737 -38.00366 -37.41789 -35.02217 -32.49482 -31.06953 -30.03352 -28.28558 -27.28554 -26.14120 -25.66010 -25.29094 -22.78742 -20.71522 -19.43047 -19.15367 -18.36083 -17.76482 -17.07813 -16.76032 -16.13857 -16.01710 -15.64566 -15.40571 -15.23554 -14.96581 -14.06439 -13.97505 -13.79249 -13.54794 -13.39999 -13.23607 -13.07949 -12.88634 -12.84167 -12.65833 -12.33971 -12.13792 -12.10234 -11.35289 -11.29773 -11.05725 -10.90127 -10.68048 -10.40186 -9.91175 -9.61387 -9.32646 -9.06497 -9.05781 -8.84820 -8.74150 -8.57383 -6.99470 -6.34212 -4.07013 0.18502 1.17350 1.62906 2.04942 2.42189 2.47713 2.82863 2.83338 3.05816 3.28512 3.45989 3.51106 3.95834 4.16681 4.27330 4.34305 4.61656 4.66846 4.70964 4.91040 4.95927 4.98403 5.04962 5.06259 5.14874 5.17916 5.22098 5.36503 5.44374 5.47749 5.59746 5.66703 5.76616 5.83008 5.91859 5.99101 6.10801 6.88856 7.63484 7.70997 7.88686 8.30349 8.36052 9.11720 10.74939 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.002823 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.435466 B = 9914.435386 C =10985.920980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.590 5.590 3 C 0.598 3.402 4 O -0.529 6.529 5 C -0.278 4.278 6 C -0.051 4.051 7 C -0.155 4.155 8 C -0.254 4.254 9 S 0.238 5.762 10 C 0.108 3.892 11 C 0.094 3.906 12 N -0.653 5.653 13 C 0.559 3.441 14 O -0.512 6.512 15 C -0.117 4.117 16 S -0.140 6.140 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.879 5.879 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.091 3.909 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.133 0.867 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.271 0.729 38 H 0.103 0.897 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.728 18.470 2.486 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.321 5.321 3 C 0.387 3.613 4 O -0.407 6.407 5 C -0.398 4.398 6 C -0.085 4.085 7 C -0.185 4.185 8 C -0.391 4.391 9 S 0.506 5.494 10 C 0.002 3.998 11 C -0.031 4.031 12 N -0.393 5.393 13 C 0.349 3.651 14 O -0.386 6.386 15 C -0.268 4.268 16 S 0.087 5.913 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.034 4.034 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.183 0.817 32 H 0.151 0.849 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.254 17.086 4.367 22.675 hybrid contribution 0.729 1.035 -1.101 1.678 sum 14.983 18.120 3.266 23.738 Atomic orbital electron populations 1.22124 0.78997 1.04183 1.03302 1.47197 1.06895 1.04742 1.73311 1.16956 0.86460 0.81930 0.75988 1.90821 1.13031 1.86746 1.50103 1.24543 0.98536 0.97491 1.19222 1.20763 1.01340 0.89847 0.96554 1.20012 0.92196 1.00949 1.05374 1.25928 1.02149 1.03833 1.07198 1.83932 1.03530 0.97746 1.64146 1.22344 0.97868 0.82365 0.97177 1.23398 0.88222 0.94459 0.96990 1.49805 1.16673 1.62632 1.10167 1.19916 0.79517 0.75480 0.90229 1.90729 1.73290 1.53699 1.20843 1.23244 0.99710 1.04115 0.99711 1.84828 1.14892 1.77523 1.14091 1.22289 1.06287 1.46339 0.92038 0.89367 1.24708 0.95707 0.93678 0.97148 1.69934 1.14508 1.39579 1.27533 0.86747 0.81390 0.79016 0.84782 1.19157 1.19890 1.15916 1.23473 0.94464 0.95404 0.90018 0.91100 0.90286 0.88406 0.83025 0.84121 0.81704 0.84923 0.90077 0.88516 0.88463 0.88729 0.91876 0.87872 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.57 8.03 59.85 0.48 1.05 16 2 N -0.59 -5.98 3.12 -175.14 -0.55 -6.52 16 3 C 0.60 6.89 7.62 -12.90 -0.10 6.79 16 4 O -0.53 -7.35 16.36 5.18 0.08 -7.27 16 5 C -0.28 -2.81 6.21 -36.79 -0.23 -3.04 16 6 C -0.05 -0.47 10.02 -40.44 -0.41 -0.87 16 7 C -0.15 -1.18 10.15 -41.41 -0.42 -1.60 16 8 C -0.25 -1.88 10.92 29.18 0.32 -1.56 16 9 S 0.24 1.96 17.89 -107.50 -1.92 0.04 16 10 C 0.11 0.95 4.70 -67.68 -0.32 0.64 16 11 C 0.09 0.93 8.24 -8.50 -0.07 0.86 16 12 N -0.65 -8.06 2.40 -185.06 -0.44 -8.50 16 13 C 0.56 9.57 7.49 -10.99 -0.08 9.49 16 14 O -0.51 -10.83 16.64 5.56 0.09 -10.74 16 15 C -0.12 -2.17 5.98 36.00 0.22 -1.96 16 16 S -0.14 -3.43 18.55 -107.50 -1.99 -5.42 16 17 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 18 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -26.02 13.97 55.49 0.78 -25.25 16 21 Si 0.86 21.30 27.74 -169.99 -4.72 16.59 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 25 C 0.09 0.78 7.45 -8.36 -0.06 0.72 16 26 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 27 H 0.08 0.68 5.11 -27.38 -0.14 0.54 16 28 H 0.10 1.03 5.04 -51.93 -0.26 0.77 16 29 H 0.15 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.13 1.08 7.26 -51.93 -0.38 0.70 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 36 H 0.09 1.59 8.13 -51.92 -0.42 1.17 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.72 7.39 -51.93 -0.38 0.33 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -35.17 353.48 -8.31 -43.48 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -4.51 Total: -0.63 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.45 Total: -1.11 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.21 Total: -40.27 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: 0.18 Total: -18.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.72 Total: 16.59 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -3.92 Total: -5.38 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.17 -8.31 -43.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358717455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.754 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds