Wall clock time and date at job start Tue Mar 31 2020 23:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99899 * 2 1 4 4 H 1.48499 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47558 * 59.99549 * 3 2 1 6 6 H 1.48505 * 109.47201 * 299.99408 * 3 2 1 7 7 C 1.38796 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00006 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47070 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99676 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99551 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.64506 * 325.70532 * 14 13 11 16 16 C 1.55161 * 110.71991 * 202.56108 * 14 13 11 17 17 C 1.54905 * 101.58211 * 206.14029 * 16 14 13 18 18 N 1.47423 * 104.83433 * 37.01074 * 17 16 14 19 19 C 1.34782 * 125.65066 * 155.91410 * 18 17 16 20 20 O 1.21696 * 119.99837 * 354.87796 * 19 18 17 21 21 C 1.46580 * 119.99985 * 174.88682 * 19 18 17 22 22 C 1.36646 * 125.45716 * 185.37976 * 21 19 18 23 23 C 1.37472 * 113.29943 * 179.97438 * 22 21 19 24 24 C 1.33824 * 115.09864 * 359.97438 * 23 22 21 25 25 S 1.70612 * 110.95385 * 359.76263 * 24 23 22 26 26 C 1.47321 * 108.73664 * 335.71620 * 18 17 16 27 27 H 0.96997 * 120.00109 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46999 * 300.00085 * 10 9 7 29 29 H 1.08997 * 109.47218 * 60.00081 * 10 9 7 30 30 H 0.96995 * 120.00165 * 0.02562 * 13 11 10 31 31 H 1.09000 * 111.00215 * 324.20968 * 16 14 13 32 32 H 1.08993 * 111.00332 * 88.02652 * 16 14 13 33 33 H 1.09003 * 110.36743 * 155.84680 * 17 16 14 34 34 H 1.08995 * 110.36936 * 278.17053 * 17 16 14 35 35 H 1.08000 * 123.35463 * 359.93420 * 22 21 19 36 36 H 1.08003 * 122.45621 * 180.02562 * 23 22 21 37 37 H 1.08002 * 124.52269 * 180.02562 * 24 23 22 38 38 H 1.09004 * 110.06353 * 241.87433 * 26 18 17 39 39 H 1.08998 * 109.85378 * 120.61306 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 1.2124 6 1 1.8917 2.3964 -1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3432 0.0039 14 6 2.3303 -7.7151 0.0050 15 1 1.4067 -7.7790 0.5802 16 6 3.3931 -8.6988 0.5620 17 6 2.9822 -10.0237 -0.1276 18 7 2.5406 -9.6258 -1.4767 19 6 2.5277 -10.4204 -2.5653 20 8 2.9894 -11.5447 -2.5034 21 6 1.9578 -9.9304 -3.8237 22 6 1.7926 -10.6705 -4.9604 23 6 1.2324 -9.9599 -5.9953 24 6 0.9474 -8.6821 -5.7178 25 16 1.3695 -8.2983 -4.1099 26 6 2.1110 -8.2171 -1.4377 27 1 -0.4850 -0.8400 0.0004 28 1 3.1244 -3.7322 -0.8872 29 1 3.1244 -3.7306 0.8928 30 1 3.8008 -6.1836 0.0041 31 1 4.3976 -8.3985 0.2640 32 1 3.3180 -8.7824 1.6461 33 1 3.8357 -10.6986 -0.1916 34 1 2.1638 -10.4961 0.4155 35 1 2.0746 -11.7101 -5.0383 36 1 1.0357 -10.4007 -6.9615 37 1 0.5050 -7.9879 -6.4169 38 1 1.0559 -8.1406 -1.7005 39 1 2.7115 -7.6277 -2.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687892492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:01 Heat of formation + Delta-G solvation = -35.526126 kcal Electronic energy + Delta-G solvation = -23853.334718 eV Core-core repulsion = 20206.838389 eV Total energy + Delta-G solvation = -3646.496329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61078 -39.43100 -38.11602 -37.18295 -34.28819 -32.58581 -31.81819 -30.28537 -29.38835 -28.14015 -25.61142 -24.89916 -23.62696 -21.87275 -21.03628 -20.48406 -19.31059 -18.45973 -18.36949 -17.15160 -16.75890 -16.43781 -16.03355 -15.54050 -15.25839 -14.99908 -14.55747 -14.25177 -13.90431 -13.86268 -13.46378 -13.37319 -13.15740 -12.92545 -12.85667 -12.69004 -12.49881 -12.37856 -12.20350 -11.93479 -11.85583 -11.29745 -11.00300 -10.94387 -10.40245 -10.24823 -9.70474 -9.63961 -9.32417 -9.25042 -9.05849 -9.01894 -8.78745 -8.29284 -6.74014 -6.67693 -4.06459 0.23455 1.22681 1.66291 2.09424 2.41617 2.78868 2.83187 2.90605 3.30606 3.36698 3.41809 3.50853 3.94167 4.14722 4.19289 4.40116 4.63357 4.74348 4.75918 4.85342 4.92660 5.01269 5.16994 5.17815 5.20582 5.31813 5.34011 5.40949 5.49122 5.58964 5.65865 5.68901 5.81883 5.92434 5.93819 6.02928 6.32214 7.02180 7.41529 7.74660 7.87601 8.32306 8.44812 9.21082 10.76343 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002562 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.567271 B =10928.137901 C =12241.691318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.090 2.910 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.067 0.933 9 S -0.115 6.115 10 C -0.132 4.132 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.729 5.729 14 C 0.144 3.856 15 H 0.111 0.889 16 C -0.140 4.140 17 C 0.111 3.889 18 N -0.616 5.616 19 C 0.610 3.390 20 O -0.532 6.532 21 C -0.277 4.277 22 C -0.054 4.054 23 C -0.155 4.155 24 C -0.243 4.243 25 S 0.232 5.768 26 C 0.072 3.928 27 H 0.278 0.722 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.403 0.597 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.086 0.914 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -20.386 -5.759 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.916 3.084 4 H -0.214 1.214 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.756 4.756 8 H 0.085 0.915 9 S 0.111 5.889 10 C -0.283 4.283 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.384 5.384 14 C 0.037 3.963 15 H 0.129 0.871 16 C -0.178 4.178 17 C -0.012 4.012 18 N -0.350 5.350 19 C 0.399 3.601 20 O -0.411 6.411 21 C -0.397 4.397 22 C -0.088 4.088 23 C -0.185 4.185 24 C -0.381 4.381 25 S 0.501 5.499 26 C -0.054 4.054 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.238 0.762 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.170 0.830 36 H 0.161 0.839 37 H 0.186 0.814 38 H 0.104 0.896 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.346 -18.385 -4.933 19.772 hybrid contribution 2.174 -2.408 -1.180 3.452 sum 7.520 -20.794 -6.113 22.941 Atomic orbital electron populations 1.70748 1.06716 1.31029 1.43376 1.26056 0.96322 1.02170 0.92968 0.83249 0.74095 0.73682 0.77382 1.21386 1.20863 1.20877 1.23751 0.96069 0.92083 1.63657 0.91493 1.84833 1.07908 0.98890 1.97243 1.23324 1.05297 0.94256 1.05435 1.20391 0.86588 0.86338 0.74803 1.90720 1.15240 1.85496 1.47075 1.45967 1.10181 1.04466 1.77762 1.21787 0.99036 0.81607 0.93834 0.87123 1.23128 0.99254 0.93822 1.01602 1.22232 1.00659 0.96934 0.81349 1.48294 1.65051 1.12297 1.09393 1.16545 0.78309 0.84079 0.81179 1.90827 1.47231 1.18995 1.84055 1.24567 1.15818 0.99845 0.99455 1.20756 0.96551 1.01128 0.90394 1.20023 1.03799 0.93697 1.01021 1.25742 1.07392 1.01381 1.03594 1.83868 1.53969 1.08198 1.03870 1.22781 1.01550 0.81581 0.99447 0.90921 0.88800 0.88772 0.76238 0.89647 0.88435 0.89439 0.90538 0.83048 0.83917 0.81423 0.89595 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.86 13.67 55.49 0.76 -26.10 16 2 C 0.04 1.00 5.49 -17.43 -0.10 0.91 16 3 Si 1.09 24.40 29.92 -169.99 -5.09 19.31 16 4 H -0.29 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.61 -16.89 9.50 30.94 0.29 -16.60 16 8 H 0.07 1.79 7.80 -52.49 -0.41 1.38 16 9 S -0.11 -2.94 19.60 -107.50 -2.11 -5.04 16 10 C -0.13 -2.43 6.16 36.01 0.22 -2.21 16 11 C 0.53 8.62 7.85 -10.98 -0.09 8.54 16 12 O -0.51 -10.24 15.55 5.56 0.09 -10.16 16 13 N -0.73 -7.89 5.12 -52.03 -0.27 -8.16 16 14 C 0.14 1.38 3.27 -66.09 -0.22 1.17 16 15 H 0.11 1.21 7.62 -51.93 -0.40 0.81 16 16 C -0.14 -0.92 6.71 -24.58 -0.16 -1.08 16 17 C 0.11 0.90 6.93 -2.53 -0.02 0.88 16 18 N -0.62 -6.49 3.33 -171.85 -0.57 -7.07 16 19 C 0.61 7.72 7.80 -12.89 -0.10 7.62 16 20 O -0.53 -8.12 17.08 5.19 0.09 -8.03 16 21 C -0.28 -3.15 6.38 -36.79 -0.23 -3.39 16 22 C -0.05 -0.55 10.02 -40.44 -0.40 -0.96 16 23 C -0.15 -1.35 10.15 -41.41 -0.42 -1.77 16 24 C -0.24 -2.17 10.92 29.18 0.32 -1.85 16 25 S 0.23 2.35 18.46 -107.50 -1.98 0.36 16 26 C 0.07 0.74 4.94 -2.90 -0.01 0.72 16 27 H 0.28 8.61 7.12 -40.82 -0.29 8.32 16 28 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 30 H 0.40 3.22 8.54 -40.82 -0.35 2.87 16 31 H 0.08 0.49 8.00 -51.93 -0.42 0.07 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.72 7.99 -51.93 -0.41 0.31 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.09 0.96 6.82 -51.93 -0.35 0.61 16 39 H 0.08 0.84 6.91 -51.93 -0.36 0.48 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -35.69 357.70 -9.36 -45.05 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -4.74 Total: 2.45 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.92 Total: -8.01 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: -0.08 Total: -41.32 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.19 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.09 Total: 19.31 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -4.09 Total: -4.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.69 -9.36 -45.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687892492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.522 kcal (2) G-P(sol) polarization free energy of solvation -35.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds