Wall clock time and date at job start Tue Mar 31 2020 23:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99899 * 2 1 4 4 H 1.48499 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47558 * 59.99549 * 3 2 1 6 6 H 1.48505 * 109.47201 * 299.99408 * 3 2 1 7 7 C 1.38796 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00006 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00062 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47070 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99676 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99761 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99551 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.64506 * 325.70532 * 14 13 11 16 16 C 1.55161 * 110.71991 * 202.56108 * 14 13 11 17 17 C 1.54905 * 101.58211 * 206.14029 * 16 14 13 18 18 N 1.47423 * 104.83433 * 37.01074 * 17 16 14 19 19 C 1.34782 * 125.65066 * 155.91410 * 18 17 16 20 20 O 1.21696 * 119.99837 * 354.87796 * 19 18 17 21 21 C 1.46580 * 119.99985 * 174.88682 * 19 18 17 22 22 C 1.36646 * 125.45716 * 185.37976 * 21 19 18 23 23 C 1.37472 * 113.29943 * 179.97438 * 22 21 19 24 24 C 1.33824 * 115.09864 * 359.97438 * 23 22 21 25 25 S 1.70612 * 110.95385 * 359.76263 * 24 23 22 26 26 C 1.47321 * 108.73664 * 335.71620 * 18 17 16 27 27 H 0.96997 * 120.00109 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46999 * 300.00085 * 10 9 7 29 29 H 1.08997 * 109.47218 * 60.00081 * 10 9 7 30 30 H 0.96995 * 120.00165 * 0.02562 * 13 11 10 31 31 H 1.09000 * 111.00215 * 324.20968 * 16 14 13 32 32 H 1.08993 * 111.00332 * 88.02652 * 16 14 13 33 33 H 1.09003 * 110.36743 * 155.84680 * 17 16 14 34 34 H 1.08995 * 110.36936 * 278.17053 * 17 16 14 35 35 H 1.08000 * 123.35463 * 359.93420 * 22 21 19 36 36 H 1.08003 * 122.45621 * 180.02562 * 23 22 21 37 37 H 1.08002 * 124.52269 * 180.02562 * 24 23 22 38 38 H 1.09004 * 110.06353 * 241.87433 * 26 18 17 39 39 H 1.08998 * 109.85378 * 120.61306 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3965 1.2124 6 1 1.8917 2.3964 -1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3432 0.0039 14 6 2.3303 -7.7151 0.0050 15 1 1.4067 -7.7790 0.5802 16 6 3.3931 -8.6988 0.5620 17 6 2.9822 -10.0237 -0.1276 18 7 2.5406 -9.6258 -1.4767 19 6 2.5277 -10.4204 -2.5653 20 8 2.9894 -11.5447 -2.5034 21 6 1.9578 -9.9304 -3.8237 22 6 1.7926 -10.6705 -4.9604 23 6 1.2324 -9.9599 -5.9953 24 6 0.9474 -8.6821 -5.7178 25 16 1.3695 -8.2983 -4.1099 26 6 2.1110 -8.2171 -1.4377 27 1 -0.4850 -0.8400 0.0004 28 1 3.1244 -3.7322 -0.8872 29 1 3.1244 -3.7306 0.8928 30 1 3.8008 -6.1836 0.0041 31 1 4.3976 -8.3985 0.2640 32 1 3.3180 -8.7824 1.6461 33 1 3.8357 -10.6986 -0.1916 34 1 2.1638 -10.4961 0.4155 35 1 2.0746 -11.7101 -5.0383 36 1 1.0357 -10.4007 -6.9615 37 1 0.5050 -7.9879 -6.4169 38 1 1.0559 -8.1406 -1.7005 39 1 2.7115 -7.6277 -2.1307 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687892492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:00 Heat of formation + Delta-G solvation = -60.317210 kcal Electronic energy + Delta-G solvation = -23854.409740 eV Core-core repulsion = 20206.838389 eV Total energy + Delta-G solvation = -3647.571351 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53240 -40.57852 -38.98909 -38.08084 -35.38169 -34.72124 -32.71599 -31.39401 -30.23532 -29.18549 -27.05650 -26.37568 -24.43787 -22.71803 -21.95008 -21.53191 -20.40169 -20.08881 -19.24065 -18.21034 -17.82405 -17.51469 -16.85141 -16.78927 -16.46412 -16.08590 -15.81238 -15.67483 -15.19895 -14.91676 -14.65195 -14.44541 -14.18091 -14.05164 -13.82958 -13.79688 -13.65521 -13.50969 -13.35816 -12.95558 -12.76744 -12.73945 -11.97883 -11.91523 -11.79533 -11.52350 -11.36696 -11.09579 -11.06150 -10.31475 -10.28645 -10.16165 -9.79205 -9.58003 -8.89532 -8.82613 -6.24194 -0.56252 0.43792 0.91247 1.20022 1.31510 1.48594 1.53488 1.63292 1.66139 1.79562 2.03142 2.19576 2.35961 3.04940 3.12420 3.21349 3.36896 3.60525 3.86078 3.92294 4.05284 4.08209 4.19275 4.22412 4.30055 4.40726 4.44062 4.47641 4.64233 4.68511 4.80897 4.93529 4.98192 5.10546 5.19271 5.31601 5.34268 5.68385 6.13694 6.18649 6.39994 6.82663 7.08563 7.13752 8.54261 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.015678 B = 0.002562 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.567271 B =10928.137901 C =12241.691318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.019 4.019 3 Si 1.139 2.861 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.611 4.611 8 H 0.075 0.925 9 S -0.193 6.193 10 C -0.112 4.112 11 C 0.539 3.461 12 O -0.556 6.556 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.099 0.901 16 C -0.121 4.121 17 C 0.104 3.896 18 N -0.613 5.613 19 C 0.604 3.396 20 O -0.568 6.568 21 C -0.301 4.301 22 C -0.055 4.055 23 C -0.155 4.155 24 C -0.239 4.239 25 S 0.219 5.781 26 C 0.075 3.925 27 H 0.262 0.738 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.421 0.579 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.170 0.830 37 H 0.190 0.810 38 H 0.074 0.926 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.676 -20.556 -5.992 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.223 4.223 3 Si 0.958 3.042 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.759 4.759 8 H 0.093 0.907 9 S 0.034 5.966 10 C -0.263 4.263 11 C 0.324 3.676 12 O -0.433 6.433 13 N -0.355 5.355 14 C 0.036 3.964 15 H 0.117 0.883 16 C -0.159 4.159 17 C -0.018 4.018 18 N -0.346 5.346 19 C 0.394 3.606 20 O -0.449 6.449 21 C -0.421 4.421 22 C -0.090 4.090 23 C -0.185 4.185 24 C -0.377 4.377 25 S 0.487 5.513 26 C -0.050 4.050 27 H 0.073 0.927 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.260 0.740 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.207 0.793 38 H 0.092 0.908 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.633 -18.585 -5.147 20.740 hybrid contribution 1.505 -2.504 -1.153 3.141 sum 9.138 -21.089 -6.300 23.832 Atomic orbital electron populations 1.70866 1.08010 1.30136 1.46072 1.27750 0.96328 1.06332 0.91861 0.82663 0.74168 0.69612 0.77752 1.18681 1.20186 1.20193 1.24074 0.96485 0.92859 1.62437 0.90698 1.85051 1.13059 1.01044 1.97476 1.23240 1.02234 0.93550 1.07298 1.20007 0.86297 0.86481 0.74778 1.90719 1.17150 1.85897 1.49520 1.45634 1.10515 1.03853 1.75522 1.21866 0.99893 0.81046 0.93575 0.88308 1.23115 0.98795 0.91301 1.02655 1.22451 1.01056 0.97977 0.80314 1.48340 1.64247 1.12167 1.09863 1.16776 0.78026 0.83821 0.81951 1.90794 1.49064 1.20336 1.84755 1.24608 1.17246 1.00705 0.99582 1.21014 0.96005 1.01464 0.90503 1.20279 1.03047 0.93505 1.01690 1.26045 1.06722 1.01906 1.03005 1.83869 1.54398 1.07765 1.05244 1.22713 1.00913 0.81545 0.99835 0.92707 0.86863 0.86796 0.74030 0.87903 0.86131 0.89246 0.89880 0.82667 0.81265 0.79294 0.90842 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.69 13.67 21.65 0.30 -56.40 16 2 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 3 Si 1.14 48.08 29.92 68.60 2.05 50.14 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.61 -33.79 9.50 67.95 0.65 -33.15 16 8 H 0.07 3.89 7.80 -2.91 -0.02 3.86 16 9 S -0.19 -10.00 19.60 -56.49 -1.11 -11.11 16 10 C -0.11 -3.93 6.16 71.24 0.44 -3.50 16 11 C 0.54 16.75 7.85 87.66 0.69 17.43 16 12 O -0.56 -22.35 15.55 -3.03 -0.05 -22.40 16 13 N -0.70 -13.43 5.12 -436.91 -2.24 -15.67 16 14 C 0.14 2.47 3.27 46.18 0.15 2.62 16 15 H 0.10 2.06 7.62 -2.39 -0.02 2.04 16 16 C -0.12 -1.22 6.71 31.99 0.21 -1.00 16 17 C 0.10 1.52 6.93 86.85 0.60 2.12 16 18 N -0.61 -12.50 3.33 -815.84 -2.72 -15.22 16 19 C 0.60 15.33 7.80 86.42 0.67 16.00 16 20 O -0.57 -17.52 17.08 -4.34 -0.07 -17.59 16 21 C -0.30 -6.84 6.38 24.07 0.15 -6.69 16 22 C -0.06 -1.09 10.02 21.72 0.22 -0.88 16 23 C -0.16 -2.45 10.15 21.08 0.21 -2.24 16 24 C -0.24 -3.89 10.92 66.82 0.73 -3.16 16 25 S 0.22 4.33 18.46 -56.49 -1.04 3.29 16 26 C 0.08 1.48 4.94 86.67 0.43 1.91 16 27 H 0.26 16.82 7.12 -92.71 -0.66 16.16 16 28 H 0.11 3.56 8.14 -2.40 -0.02 3.55 16 29 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 30 H 0.42 5.17 8.54 -92.71 -0.79 4.38 16 31 H 0.10 0.75 8.00 -2.39 -0.02 0.73 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.33 7.99 -2.39 -0.02 1.31 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.07 1.66 6.82 -2.39 -0.02 1.65 16 39 H 0.08 1.63 6.91 -2.39 -0.02 1.61 16 Total: -1.00 -80.22 357.70 1.15 -79.06 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.41 Total: 17.05 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.62 Total: -11.15 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -4.66 Total: -87.28 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.12 Total: -39.99 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.05 Total: 50.14 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -2.15 Total: -7.82 kcal Total: -80.22 1.15 -79.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687892492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.747 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds