Wall clock time and date at job start Tue Mar 31 2020 23:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 C 1.53004 * 114.26505 * 139.79059 * 15 14 13 17 17 N 1.46500 * 109.46740 * 91.47859 * 16 15 14 18 18 C 1.34776 * 119.99541 * 179.97438 * 17 16 15 19 19 O 1.21635 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.47195 * 119.99662 * 179.97438 * 18 17 16 21 21 C 1.44423 * 123.45830 * 179.73105 * 20 18 17 22 22 C 1.32774 * 113.08437 * 179.80851 * 21 20 18 23 23 S 1.75512 * 110.57207 * 0.44340 * 22 21 20 24 24 C 1.36012 * 123.46084 * 0.02562 * 20 18 17 25 25 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 26 26 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 28 28 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 29 29 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 30 30 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 31 31 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 32 32 H 1.09000 * 109.46950 * 211.47918 * 16 15 14 33 33 H 1.08992 * 109.47187 * 331.48168 * 16 15 14 34 34 H 0.97004 * 120.00077 * 0.02562 * 17 16 15 35 35 H 1.08005 * 123.46131 * 359.97438 * 21 20 18 36 36 H 1.07997 * 124.71578 * 180.17642 * 22 21 20 37 37 H 1.07995 * 124.59121 * 0.02562 * 24 20 18 38 38 H 1.09001 * 113.46952 * 321.86856 * 25 13 11 39 39 H 1.09004 * 113.46955 * 92.25117 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 6 5.0133 -8.9811 0.1713 17 7 6.2358 -9.0134 0.9779 18 6 7.1936 -9.9239 0.7135 19 8 7.0428 -10.7192 -0.1944 20 6 8.4222 -9.9561 1.5236 21 6 9.4925 -10.9018 1.3096 22 6 10.5039 -10.7435 2.1552 23 16 10.1779 -9.4248 3.2666 24 6 8.6636 -9.1018 2.5541 25 6 2.7297 -7.8092 -0.0165 26 1 -0.4851 0.8400 -0.0004 27 1 3.1212 -3.7293 -0.8992 28 1 3.1279 -3.7332 0.8807 29 1 4.7224 -6.6035 -1.0299 30 1 4.8324 -5.7788 0.5838 31 1 4.0523 -7.8025 1.7636 32 1 4.4977 -9.9378 0.2545 33 1 5.2709 -8.7965 -0.8715 34 1 6.3556 -8.3799 1.7027 35 1 9.4735 -11.6584 0.5391 36 1 11.4005 -11.3455 2.1612 37 1 7.9870 -8.3248 2.8776 38 1 1.9144 -8.1821 0.6034 39 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688648564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:42 Heat of formation + Delta-G solvation = 1.310851 kcal Electronic energy + Delta-G solvation = -22852.284163 eV Core-core repulsion = 19207.385206 eV Total energy + Delta-G solvation = -3644.898957 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70579 -39.96417 -37.77844 -37.18094 -35.05473 -32.46008 -31.42167 -30.30137 -28.84427 -26.37562 -26.09736 -25.47511 -24.82443 -21.80182 -21.39989 -19.57180 -19.10035 -18.62343 -17.73800 -17.43461 -16.71331 -16.45821 -15.90235 -15.55253 -15.27161 -14.87248 -14.83093 -14.42716 -13.95512 -13.73130 -13.62903 -13.52412 -13.17194 -13.09896 -12.91730 -12.81094 -12.52974 -12.27172 -11.97728 -11.66794 -11.61572 -11.07890 -11.06315 -10.90735 -10.79799 -10.31121 -9.86371 -9.62042 -9.51000 -9.43463 -9.08942 -8.93474 -8.67748 -8.28195 -6.54212 -6.24289 -3.95717 0.25743 1.02860 1.40855 1.54582 2.63893 2.75099 2.96687 3.00941 3.21139 3.21812 3.26712 3.51757 3.90401 4.17285 4.20831 4.38570 4.50436 4.59063 4.73579 4.73685 4.87494 4.92736 5.10663 5.21237 5.24021 5.29613 5.31028 5.37523 5.45485 5.55101 5.58824 5.75420 5.77693 5.86208 5.95694 6.00495 6.09343 7.04318 7.56171 7.78544 7.80530 8.31954 8.48323 9.20587 10.83054 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.001864 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.538617 B =15021.014434 C =16568.775043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.562 3.438 12 O -0.512 6.512 13 N -0.654 5.654 14 C 0.106 3.894 15 C -0.142 4.142 16 C 0.133 3.867 17 N -0.724 5.724 18 C 0.578 3.422 19 O -0.535 6.535 20 C -0.155 4.155 21 C -0.086 4.086 22 C -0.237 4.237 23 S 0.190 5.810 24 C -0.212 4.212 25 C 0.116 3.884 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.155 0.845 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.081 0.919 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.404 -21.934 6.387 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.352 3.648 12 O -0.386 6.386 13 N -0.393 5.393 14 C -0.018 4.018 15 C -0.162 4.162 16 C 0.009 3.991 17 N -0.376 5.376 18 C 0.363 3.637 19 O -0.413 6.413 20 C -0.174 4.174 21 C -0.115 4.115 22 C -0.372 4.372 23 S 0.456 5.544 24 C -0.351 4.351 25 C -0.008 4.008 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.172 0.828 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.948 -21.834 6.924 31.040 hybrid contribution 1.224 1.071 -0.883 1.851 sum 22.172 -20.764 6.041 30.971 Atomic orbital electron populations 1.70004 1.05953 1.27627 1.46627 1.24997 0.95045 0.99039 0.94490 0.86213 0.79233 0.81185 0.78801 1.19921 1.20773 1.19930 1.22807 0.94847 0.91569 1.59242 0.90978 1.85418 1.04814 0.96329 1.96729 1.23468 1.06544 0.94636 1.04828 1.19947 0.85270 0.84884 0.74673 1.90722 1.14785 1.84856 1.48235 1.49605 1.07748 1.06002 1.75910 1.23128 0.82716 0.95370 1.00600 1.23346 0.96401 0.94902 1.01527 1.21292 0.83755 0.98728 0.95317 1.45829 1.19100 1.36015 1.36648 1.17588 0.82294 0.80541 0.83245 1.90814 1.79439 1.39798 1.31223 1.20315 0.97577 0.99937 0.99540 1.21158 0.91291 0.99025 0.99996 1.25566 1.04659 1.04727 1.02217 1.83203 1.10408 1.28105 1.32705 1.25726 1.03659 1.04515 1.01170 1.22792 0.96069 0.81365 1.00539 0.92077 0.89312 0.89337 0.89541 0.90146 0.86991 0.90357 0.90425 0.76447 0.82788 0.81217 0.81154 0.90008 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.14 -2.95 5.98 36.00 0.22 -2.74 16 11 C 0.56 10.85 8.10 -10.99 -0.09 10.76 16 12 O -0.51 -12.03 16.64 5.56 0.09 -11.94 16 13 N -0.65 -8.97 3.69 -185.04 -0.68 -9.65 16 14 C 0.11 0.94 8.00 -8.37 -0.07 0.88 16 15 C -0.14 -0.99 4.11 -89.95 -0.37 -1.36 16 16 C 0.13 0.90 5.59 -4.04 -0.02 0.88 16 17 N -0.72 -4.78 5.52 -61.46 -0.34 -5.11 16 18 C 0.58 5.39 7.79 -12.62 -0.10 5.29 16 19 O -0.53 -6.98 16.80 5.25 0.09 -6.89 16 20 C -0.16 -1.18 5.98 -104.63 -0.63 -1.81 16 21 C -0.09 -0.62 10.10 -39.02 -0.39 -1.01 16 22 C -0.24 -1.23 11.12 28.86 0.32 -0.91 16 23 S 0.19 0.86 23.02 -107.50 -2.48 -1.62 16 24 C -0.21 -1.13 10.38 29.93 0.31 -0.82 16 25 C 0.12 1.16 8.19 -8.50 -0.07 1.09 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.09 0.69 7.88 -51.93 -0.41 0.28 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.57 7.81 -51.93 -0.41 0.16 16 34 H 0.40 1.66 6.97 -40.82 -0.28 1.38 16 35 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 37 H 0.17 0.49 7.01 -52.49 -0.37 0.12 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -37.75 369.54 -9.75 -47.50 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.81 Total: -2.24 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.69 Total: -2.69 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.29 Total: -40.10 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -0.77 SS G_CDS: -4.69 Total: -5.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.75 -9.75 -47.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688648564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.815 kcal (2) G-P(sol) polarization free energy of solvation -37.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds