Wall clock time and date at job start Tue Mar 31 2020 23:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05814 * 359.63188 * 13 11 10 15 15 C 1.53760 * 87.88929 * 152.95955 * 14 13 11 16 16 C 1.53004 * 114.26505 * 139.79059 * 15 14 13 17 17 N 1.46500 * 109.46740 * 91.47859 * 16 15 14 18 18 C 1.34776 * 119.99541 * 179.97438 * 17 16 15 19 19 O 1.21635 * 120.00386 * 359.97438 * 18 17 16 20 20 C 1.47195 * 119.99662 * 179.97438 * 18 17 16 21 21 C 1.44423 * 123.45830 * 179.73105 * 20 18 17 22 22 C 1.32774 * 113.08437 * 179.80851 * 21 20 18 23 23 S 1.75512 * 110.57207 * 0.44340 * 22 21 20 24 24 C 1.36012 * 123.46084 * 0.02562 * 20 18 17 25 25 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 26 26 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 28 28 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 29 29 H 1.09001 * 113.47005 * 267.69331 * 14 13 11 30 30 H 1.09003 * 113.46723 * 38.13512 * 14 13 11 31 31 H 1.09001 * 114.39663 * 272.68097 * 15 14 13 32 32 H 1.09000 * 109.46950 * 211.47918 * 16 15 14 33 33 H 1.08992 * 109.47187 * 331.48168 * 16 15 14 34 34 H 0.97004 * 120.00077 * 0.02562 * 17 16 15 35 35 H 1.08005 * 123.46131 * 359.97438 * 21 20 18 36 36 H 1.07997 * 124.71578 * 180.17642 * 22 21 20 37 37 H 1.07995 * 124.59121 * 0.02562 * 24 20 18 38 38 H 1.09001 * 113.46952 * 321.86856 * 25 13 11 39 39 H 1.09004 * 113.46955 * 92.25117 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3052 -6.5116 -0.0271 15 6 4.0986 -7.8632 0.6762 16 6 5.0133 -8.9811 0.1713 17 7 6.2358 -9.0134 0.9779 18 6 7.1936 -9.9239 0.7135 19 8 7.0428 -10.7192 -0.1944 20 6 8.4222 -9.9561 1.5236 21 6 9.4925 -10.9018 1.3096 22 6 10.5039 -10.7435 2.1552 23 16 10.1779 -9.4248 3.2666 24 6 8.6636 -9.1018 2.5541 25 6 2.7297 -7.8092 -0.0165 26 1 -0.4851 0.8400 -0.0004 27 1 3.1212 -3.7293 -0.8992 28 1 3.1279 -3.7332 0.8807 29 1 4.7224 -6.6035 -1.0299 30 1 4.8324 -5.7788 0.5838 31 1 4.0523 -7.8025 1.7636 32 1 4.4977 -9.9378 0.2545 33 1 5.2709 -8.7965 -0.8715 34 1 6.3556 -8.3799 1.7027 35 1 9.4735 -11.6584 0.5391 36 1 11.4005 -11.3455 2.1612 37 1 7.9870 -8.3248 2.8776 38 1 1.9144 -8.1821 0.6034 39 1 2.7309 -8.2427 -1.0166 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688648564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:41 Heat of formation + Delta-G solvation = -25.939679 kcal Electronic energy + Delta-G solvation = -22853.465835 eV Core-core repulsion = 19207.385206 eV Total energy + Delta-G solvation = -3646.080629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60437 -40.74983 -39.07271 -37.72819 -35.79703 -34.60085 -32.47954 -31.13550 -29.88409 -27.74099 -27.13705 -26.84365 -25.44098 -22.39831 -22.17621 -20.50920 -20.02340 -19.54131 -19.05151 -18.07082 -17.92646 -17.24603 -16.96673 -16.87722 -16.50417 -16.35415 -15.78027 -15.73227 -15.11015 -14.67401 -14.58916 -14.27983 -14.01940 -13.90582 -13.77118 -13.60506 -13.46896 -13.31888 -13.22136 -13.03156 -12.87208 -12.63877 -12.40960 -12.06497 -11.76999 -11.67933 -11.14055 -11.05198 -10.91288 -10.31401 -10.19273 -9.95226 -9.80392 -9.33105 -8.70360 -8.35664 -6.15152 -0.17733 0.65845 0.99974 1.02509 1.19161 1.42090 1.43690 1.52015 1.54787 1.94920 2.15372 2.26233 2.36097 2.98314 3.15660 3.23292 3.61037 3.75829 3.88587 3.97486 4.06969 4.16805 4.23859 4.33718 4.41977 4.46146 4.49029 4.56180 4.59431 4.75748 4.79281 4.85571 4.87694 5.16552 5.20337 5.29042 5.39864 5.41026 6.18132 6.50693 6.58293 7.05014 7.07119 7.19837 8.73329 Molecular weight = 340.07amu Principal moments of inertia in cm(-1) A = 0.014846 B = 0.001864 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.538617 B =15021.014434 C =16568.775043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.117 4.117 11 C 0.559 3.441 12 O -0.570 6.570 13 N -0.654 5.654 14 C 0.100 3.900 15 C -0.108 4.108 16 C 0.139 3.861 17 N -0.710 5.710 18 C 0.575 3.425 19 O -0.583 6.583 20 C -0.184 4.184 21 C -0.112 4.112 22 C -0.237 4.237 23 S 0.231 5.769 24 C -0.205 4.205 25 C 0.106 3.894 26 H 0.272 0.728 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.143 0.857 36 H 0.190 0.810 37 H 0.197 0.803 38 H 0.076 0.924 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.729 -21.575 7.641 34.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.268 4.268 11 C 0.349 3.651 12 O -0.448 6.448 13 N -0.390 5.390 14 C -0.021 4.021 15 C -0.128 4.128 16 C 0.014 3.986 17 N -0.362 5.362 18 C 0.362 3.638 19 O -0.465 6.465 20 C -0.203 4.203 21 C -0.141 4.141 22 C -0.371 4.371 23 S 0.497 5.503 24 C -0.344 4.344 25 C -0.016 4.016 26 H 0.081 0.919 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.160 0.840 36 H 0.207 0.793 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 24.338 -21.502 8.204 33.496 hybrid contribution 0.321 0.803 -1.220 1.495 sum 24.659 -20.699 6.984 32.944 Atomic orbital electron populations 1.70178 1.08012 1.28739 1.47802 1.26161 0.95995 1.03397 0.93664 0.84982 0.77789 0.75525 0.79564 1.18660 1.20428 1.18458 1.23149 0.95326 0.91802 1.59158 0.89836 1.85620 1.10529 0.99340 1.97053 1.23253 1.03411 0.93766 1.06408 1.19640 0.85029 0.85534 0.74934 1.90694 1.17150 1.85635 1.51368 1.49558 1.09717 1.06533 1.73198 1.23525 0.79686 0.96630 1.02301 1.23091 0.93986 0.93714 1.01974 1.21188 0.83699 0.98404 0.95263 1.45691 1.18341 1.35551 1.36657 1.17891 0.83001 0.80122 0.82757 1.90784 1.80493 1.41810 1.33396 1.20248 0.97439 1.01632 1.00953 1.21210 0.92346 0.99646 1.00898 1.25854 1.04694 1.04992 1.01607 1.83124 1.09172 1.26725 1.31273 1.26065 1.04448 1.04003 0.99883 1.23133 0.97777 0.78785 1.01946 0.91949 0.87761 0.87340 0.87870 0.88449 0.85383 0.90484 0.90622 0.74754 0.83961 0.79299 0.78638 0.90572 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 2 C 0.01 0.72 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.12 -4.73 5.98 71.24 0.43 -4.30 16 11 C 0.56 21.44 8.10 87.66 0.71 22.15 16 12 O -0.57 -27.60 16.64 -3.02 -0.05 -27.65 16 13 N -0.65 -16.75 3.69 -857.73 -3.16 -19.92 16 14 C 0.10 1.45 8.00 83.26 0.67 2.11 16 15 C -0.11 -1.16 4.11 -10.36 -0.04 -1.20 16 16 C 0.14 1.53 5.59 86.38 0.48 2.01 16 17 N -0.71 -7.64 5.52 -466.59 -2.58 -10.22 16 18 C 0.58 10.18 7.79 86.60 0.67 10.85 16 19 O -0.58 -15.37 16.80 -4.14 -0.07 -15.44 16 20 C -0.18 -2.59 5.98 -19.87 -0.12 -2.71 16 21 C -0.11 -1.57 10.10 22.67 0.23 -1.34 16 22 C -0.24 -2.07 11.12 66.64 0.74 -1.33 16 23 S 0.23 1.42 23.02 -56.49 -1.30 0.12 16 24 C -0.21 -1.61 10.38 67.30 0.70 -0.91 16 25 C 0.11 1.92 8.19 83.18 0.68 2.60 16 26 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 27 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.10 1.25 7.88 -2.39 -0.02 1.23 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.94 7.81 -2.39 -0.02 0.92 16 34 H 0.41 1.97 6.97 -92.71 -0.65 1.32 16 35 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 36 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.20 0.33 7.01 -2.91 -0.02 0.31 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.56 8.11 -2.39 -0.02 1.54 16 Total: -1.00 -86.67 369.54 0.69 -85.98 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.44 Total: 8.67 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.26 Total: -1.34 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -5.45 Total: -85.78 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.12 Total: -43.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -2.46 Total: -9.59 kcal Total: -86.67 0.69 -85.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688648564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.041 kcal (2) G-P(sol) polarization free energy of solvation -86.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds