Wall clock time and date at job start Tue Mar 31 2020 22:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48505 * 109.47346 * 180.27603 * 3 2 1 5 5 H 1.48501 * 109.46991 * 300.27526 * 3 2 1 6 6 H 1.48508 * 109.47292 * 60.27674 * 3 2 1 7 7 C 1.38808 * 120.00283 * 180.27648 * 2 1 3 8 8 H 1.08004 * 120.00579 * 175.21636 * 7 2 1 9 9 N 1.36939 * 119.99689 * 355.21975 * 7 2 1 10 10 C 1.47239 * 121.39227 * 215.13637 * 9 7 2 11 11 C 1.52743 * 107.70845 * 238.33597 * 10 9 7 12 12 C 1.53085 * 110.93239 * 302.04420 * 11 10 9 13 13 H 1.08999 * 112.14491 * 287.59752 * 12 11 10 14 14 C 1.55411 * 106.23265 * 164.37236 * 12 11 10 15 15 N 1.48919 * 106.06732 * 268.59492 * 14 12 11 16 16 C 1.34776 * 125.44951 * 178.83624 * 15 14 12 17 17 O 1.21654 * 120.00417 * 5.50436 * 16 15 14 18 18 C 1.47049 * 119.99884 * 185.51316 * 16 15 14 19 19 C 1.44509 * 123.49028 * 25.09404 * 18 16 15 20 20 C 1.32692 * 113.09629 * 179.97438 * 19 18 16 21 21 S 1.75489 * 110.63263 * 0.02562 * 20 19 18 22 22 C 1.36217 * 123.49135 * 204.80283 * 18 16 15 23 23 Cl 1.73594 * 124.60692 * 0.02562 * 22 18 16 24 24 C 1.47844 * 108.89814 * 358.80828 * 15 14 12 25 25 C 1.53851 * 103.99199 * 336.67281 * 24 15 14 26 26 H 1.08997 * 109.15965 * 283.00704 * 25 24 15 27 27 C 1.46699 * 121.39468 * 34.84894 * 9 7 2 28 28 H 0.97006 * 119.99898 * 359.72525 * 1 2 3 29 29 H 1.09010 * 109.80809 * 357.88790 * 10 9 7 30 30 H 1.08998 * 109.81105 * 118.71931 * 10 9 7 31 31 H 1.08999 * 109.18595 * 62.41716 * 11 10 9 32 32 H 1.08998 * 109.18310 * 181.66638 * 11 10 9 33 33 H 1.09007 * 109.96680 * 28.13547 * 14 12 11 34 34 H 1.09000 * 109.96749 * 149.39518 * 14 12 11 35 35 H 1.07999 * 123.45177 * 359.96170 * 19 18 16 36 36 H 1.08009 * 124.68344 * 179.97438 * 20 19 18 37 37 H 1.08994 * 110.52884 * 218.04422 * 24 15 14 38 38 H 1.09004 * 110.52363 * 95.29748 * 24 15 14 39 39 H 1.08997 * 109.12591 * 248.30690 * 27 9 7 40 40 H 1.09002 * 109.11946 * 7.40298 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8863 2.3993 -1.2091 6 1 1.8965 2.3936 1.2159 7 6 2.0102 -1.2021 -0.0058 8 1 3.0874 -1.2034 -0.0838 9 7 1.3291 -2.3864 0.0873 10 6 1.8884 -3.5376 0.8151 11 6 1.9858 -4.7045 -0.1656 12 6 0.6145 -5.0352 -0.7603 13 1 -0.0419 -5.5177 -0.0361 14 6 0.8839 -5.9275 -2.0039 15 7 0.9956 -4.9977 -3.1618 16 6 1.2505 -5.3612 -4.4343 17 8 1.3111 -6.5397 -4.7299 18 6 1.4557 -4.3332 -5.4656 19 6 1.9176 -2.9948 -5.1765 20 6 2.0305 -2.2376 -6.2603 21 16 1.5713 -3.1385 -7.6946 22 6 1.2354 -4.5455 -6.7929 23 17 0.6835 -6.0442 -7.4733 24 6 0.7808 -3.6141 -2.6874 25 6 -0.0300 -3.7868 -1.3913 26 1 -1.0666 -4.0087 -1.6447 27 6 0.0089 -2.5592 -0.5286 28 1 -0.4850 0.8401 0.0040 29 1 2.8800 -3.2891 1.1935 30 1 1.2330 -3.8044 1.6442 31 1 2.6709 -4.4394 -0.9709 32 1 2.3704 -5.5804 0.3569 33 1 1.8118 -6.4835 -1.8690 34 1 0.0540 -6.6181 -2.1533 35 1 2.1472 -2.6464 -4.1804 36 1 2.3589 -1.2087 -6.2598 37 1 0.2120 -3.0426 -3.4207 38 1 1.7346 -3.1289 -2.4797 39 1 -0.7413 -2.6569 0.2561 40 1 -0.2205 -1.6818 -1.1334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088128708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:03 Heat of formation + Delta-G solvation = 26.551254 kcal Electronic energy + Delta-G solvation = -25742.872769 eV Core-core repulsion = 22097.024611 eV Total energy + Delta-G solvation = -3645.848158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.26685 -38.52106 -37.04296 -36.45521 -35.19298 -32.70229 -30.80472 -30.63041 -29.62364 -27.65804 -25.73539 -24.99056 -23.29347 -21.97349 -21.33559 -20.57722 -19.08151 -18.45777 -18.16086 -16.93976 -16.23720 -15.71928 -15.61572 -14.80296 -14.41576 -14.15531 -13.94756 -13.74042 -13.56724 -13.51577 -13.23151 -13.16691 -12.73779 -12.35931 -12.12714 -12.04814 -11.77394 -11.56365 -11.29491 -11.14338 -11.00030 -10.95374 -10.81355 -10.62297 -10.47041 -10.23301 -10.00935 -9.65935 -9.51850 -9.45330 -8.93801 -8.66144 -8.56804 -8.30056 -6.62848 -5.88106 -3.40368 0.51928 0.90783 1.59435 1.94824 2.11453 3.20125 3.29317 3.34302 3.38742 3.39241 4.39639 4.59867 4.86704 4.99101 5.03979 5.18009 5.22471 5.32968 5.43570 5.56992 5.66528 5.74894 5.85664 5.87584 5.94319 6.01795 6.07290 6.14900 6.32725 6.35153 6.46542 6.54068 6.65598 6.74605 6.81035 6.96769 7.26020 7.67089 7.70419 7.75129 8.32359 8.42777 9.15734 9.74021 10.37353 11.18228 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.004065 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.426231 B = 6886.253737 C = 8545.726491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.012 3.988 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.141 3.859 11 C -0.128 4.128 12 C -0.087 4.087 13 H 0.088 0.912 14 C 0.115 3.885 15 N -0.610 5.610 16 C 0.586 3.414 17 O -0.536 6.536 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.222 4.222 21 S 0.208 5.792 22 C -0.129 4.129 23 Cl 0.009 6.991 24 C 0.111 3.889 25 C -0.112 4.112 26 H 0.063 0.937 27 C 0.172 3.828 28 H 0.255 0.745 29 H 0.055 0.945 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.019 0.981 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -6.603 -11.497 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.187 4.187 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.015 3.985 11 C -0.167 4.167 12 C -0.106 4.106 13 H 0.106 0.894 14 C -0.007 4.007 15 N -0.343 5.343 16 C 0.373 3.627 17 O -0.414 6.414 18 C -0.159 4.159 19 C -0.130 4.130 20 C -0.358 4.358 21 S 0.472 5.528 22 C -0.276 4.276 23 Cl 0.038 6.962 24 C -0.011 4.011 25 C -0.133 4.133 26 H 0.082 0.918 27 C 0.046 3.954 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.186 0.814 36 H 0.196 0.804 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.138 -6.853 -13.321 15.023 hybrid contribution 0.367 0.414 1.524 1.621 sum 1.505 -6.439 -11.797 13.524 Atomic orbital electron populations 1.69867 1.05332 1.25429 1.54054 1.25308 0.95497 0.98151 0.99725 0.86283 0.79466 0.84049 0.77378 1.20233 1.21667 1.21487 1.19140 0.90823 0.82881 1.45214 0.91760 1.43965 1.18804 1.09771 1.58817 1.20926 0.97443 0.87794 0.92339 1.22044 0.95452 0.99063 1.00184 1.22154 0.97931 0.95503 0.95014 0.89366 1.22648 1.01127 0.92165 0.84793 1.48960 1.69277 1.09820 1.06263 1.17053 0.77438 0.87364 0.80825 1.90806 1.52161 1.17808 1.80670 1.20313 1.07514 0.95882 0.92192 1.21622 0.99497 0.90622 1.01242 1.25576 1.10047 1.04966 0.95170 1.83068 1.62675 0.98074 1.08994 1.25168 1.09131 0.96128 0.97164 1.98391 1.86995 1.27658 1.83151 1.22559 1.01010 0.81676 0.95825 1.22108 0.97684 0.98115 0.95398 0.91835 1.20160 0.86998 0.93891 0.94400 0.93477 0.92685 0.96064 0.92253 0.93206 0.91402 0.91952 0.81395 0.80444 0.91039 0.89689 0.96314 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 10.63 55.49 0.59 -23.46 16 2 C 0.01 0.31 5.34 -17.44 -0.09 0.22 16 3 Si 0.90 20.19 29.56 -169.99 -5.02 15.17 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.26 9.64 -15.06 -0.15 -6.41 16 8 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 9 N -0.59 -13.30 2.83 -174.35 -0.49 -13.79 16 10 C 0.14 2.70 6.52 -3.77 -0.02 2.68 16 11 C -0.13 -2.06 4.78 -26.82 -0.13 -2.19 16 12 C -0.09 -1.34 3.58 -88.77 -0.32 -1.66 16 13 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.11 1.74 6.31 -1.42 -0.01 1.73 16 15 N -0.61 -9.94 3.38 -170.00 -0.57 -10.52 16 16 C 0.59 10.13 7.65 -12.69 -0.10 10.03 16 17 O -0.54 -10.44 15.72 5.23 0.08 -10.36 16 18 C -0.14 -2.11 5.69 -104.58 -0.59 -2.71 16 19 C -0.10 -1.35 8.55 -39.00 -0.33 -1.68 16 20 C -0.22 -2.42 11.11 28.84 0.32 -2.10 16 21 S 0.21 2.17 23.02 -107.50 -2.47 -0.31 16 22 C -0.13 -1.79 6.85 30.01 0.21 -1.58 16 23 Cl 0.01 0.13 27.54 -51.86 -1.43 -1.30 16 24 C 0.11 1.82 4.00 -2.86 -0.01 1.81 16 25 C -0.11 -1.93 2.82 -91.09 -0.26 -2.18 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 C 0.17 3.67 4.63 -5.38 -0.02 3.64 16 28 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.05 1.05 7.97 -51.92 -0.41 0.63 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.02 7.10 -51.93 -0.37 0.66 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.02 7.74 -51.92 -0.40 0.61 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.17 2.30 5.42 -52.49 -0.28 2.02 16 36 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.07 1.14 6.98 -51.93 -0.36 0.78 16 38 H 0.09 1.51 6.30 -51.93 -0.33 1.19 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.11 2.53 5.92 -51.93 -0.31 2.22 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -28.36 341.94 -10.65 -39.01 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.97 Total: 0.81 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.51 Total: -0.40 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.48 Total: -47.77 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.47 Total: -0.31 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.43 Total: -1.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.36 -10.65 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088128708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.564 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds