Wall clock time and date at job start Tue Mar 31 2020 22:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86802 * 120.00073 * 2 1 4 4 H 1.48505 * 109.47346 * 180.27603 * 3 2 1 5 5 H 1.48501 * 109.46991 * 300.27526 * 3 2 1 6 6 H 1.48508 * 109.47292 * 60.27674 * 3 2 1 7 7 C 1.38808 * 120.00283 * 180.27648 * 2 1 3 8 8 H 1.08004 * 120.00579 * 175.21636 * 7 2 1 9 9 N 1.36939 * 119.99689 * 355.21975 * 7 2 1 10 10 C 1.47239 * 121.39227 * 215.13637 * 9 7 2 11 11 C 1.52743 * 107.70845 * 238.33597 * 10 9 7 12 12 C 1.53085 * 110.93239 * 302.04420 * 11 10 9 13 13 H 1.08999 * 112.14491 * 287.59752 * 12 11 10 14 14 C 1.55411 * 106.23265 * 164.37236 * 12 11 10 15 15 N 1.48919 * 106.06732 * 268.59492 * 14 12 11 16 16 C 1.34776 * 125.44951 * 178.83624 * 15 14 12 17 17 O 1.21654 * 120.00417 * 5.50436 * 16 15 14 18 18 C 1.47049 * 119.99884 * 185.51316 * 16 15 14 19 19 C 1.44509 * 123.49028 * 25.09404 * 18 16 15 20 20 C 1.32692 * 113.09629 * 179.97438 * 19 18 16 21 21 S 1.75489 * 110.63263 * 0.02562 * 20 19 18 22 22 C 1.36217 * 123.49135 * 204.80283 * 18 16 15 23 23 Cl 1.73594 * 124.60692 * 0.02562 * 22 18 16 24 24 C 1.47844 * 108.89814 * 358.80828 * 15 14 12 25 25 C 1.53851 * 103.99199 * 336.67281 * 24 15 14 26 26 H 1.08997 * 109.15965 * 283.00704 * 25 24 15 27 27 C 1.46699 * 121.39468 * 34.84894 * 9 7 2 28 28 H 0.97006 * 119.99898 * 359.72525 * 1 2 3 29 29 H 1.09010 * 109.80809 * 357.88790 * 10 9 7 30 30 H 1.08998 * 109.81105 * 118.71931 * 10 9 7 31 31 H 1.08999 * 109.18595 * 62.41716 * 11 10 9 32 32 H 1.08998 * 109.18310 * 181.66638 * 11 10 9 33 33 H 1.09007 * 109.96680 * 28.13547 * 14 12 11 34 34 H 1.09000 * 109.96749 * 149.39518 * 14 12 11 35 35 H 1.07999 * 123.45177 * 359.96170 * 19 18 16 36 36 H 1.08009 * 124.68344 * 179.97438 * 20 19 18 37 37 H 1.08994 * 110.52884 * 218.04422 * 24 15 14 38 38 H 1.09004 * 110.52363 * 95.29748 * 24 15 14 39 39 H 1.08997 * 109.12591 * 248.30690 * 27 9 7 40 40 H 1.09002 * 109.11946 * 7.40298 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8863 2.3993 -1.2091 6 1 1.8965 2.3936 1.2159 7 6 2.0102 -1.2021 -0.0058 8 1 3.0874 -1.2034 -0.0838 9 7 1.3291 -2.3864 0.0873 10 6 1.8884 -3.5376 0.8151 11 6 1.9858 -4.7045 -0.1656 12 6 0.6145 -5.0352 -0.7603 13 1 -0.0419 -5.5177 -0.0361 14 6 0.8839 -5.9275 -2.0039 15 7 0.9956 -4.9977 -3.1618 16 6 1.2505 -5.3612 -4.4343 17 8 1.3111 -6.5397 -4.7299 18 6 1.4557 -4.3332 -5.4656 19 6 1.9176 -2.9948 -5.1765 20 6 2.0305 -2.2376 -6.2603 21 16 1.5713 -3.1385 -7.6946 22 6 1.2354 -4.5455 -6.7929 23 17 0.6835 -6.0442 -7.4733 24 6 0.7808 -3.6141 -2.6874 25 6 -0.0300 -3.7868 -1.3913 26 1 -1.0666 -4.0087 -1.6447 27 6 0.0089 -2.5592 -0.5286 28 1 -0.4850 0.8401 0.0040 29 1 2.8800 -3.2891 1.1935 30 1 1.2330 -3.8044 1.6442 31 1 2.6709 -4.4394 -0.9709 32 1 2.3704 -5.5804 0.3569 33 1 1.8118 -6.4835 -1.8690 34 1 0.0540 -6.6181 -2.1533 35 1 2.1472 -2.6464 -4.1804 36 1 2.3589 -1.2087 -6.2598 37 1 0.2120 -3.0426 -3.4207 38 1 1.7346 -3.1289 -2.4797 39 1 -0.7413 -2.6569 0.2561 40 1 -0.2205 -1.6818 -1.1334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088128708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:02 Heat of formation + Delta-G solvation = 11.899843 kcal Electronic energy + Delta-G solvation = -25743.508102 eV Core-core repulsion = 22097.024611 eV Total energy + Delta-G solvation = -3646.483491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.57574 -39.84856 -38.17631 -37.50423 -36.78541 -34.32987 -32.32237 -32.21865 -30.64613 -29.11207 -27.32044 -26.32258 -24.69586 -23.39438 -22.82181 -21.71667 -20.24648 -20.00581 -19.19760 -18.58966 -17.46144 -17.10310 -17.03665 -16.43915 -15.78985 -15.37681 -15.21999 -15.17491 -14.90065 -14.79286 -14.46293 -14.40728 -14.14584 -13.73815 -13.62890 -13.47625 -13.11090 -12.81857 -12.72018 -12.63087 -12.47288 -12.28752 -12.26283 -12.06367 -11.93689 -11.83939 -11.61782 -11.03106 -10.99507 -10.94606 -10.47407 -9.95946 -9.70018 -9.48986 -8.46532 -7.80399 -5.34467 -0.51432 -0.03300 0.63932 0.89676 1.11967 1.49661 1.54314 1.61894 1.94794 2.10984 2.54612 3.33762 3.44257 3.66856 3.74631 3.76811 3.93844 3.95893 4.12499 4.29953 4.40075 4.54336 4.61028 4.66596 4.68866 4.76259 4.91290 4.96192 5.00766 5.03400 5.12118 5.16307 5.20988 5.26445 5.35462 5.43794 5.64682 5.72038 5.89543 6.42465 6.52829 7.02707 7.25527 7.91885 8.49877 9.23696 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012915 B = 0.004065 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.426231 B = 6886.253737 C = 8545.726491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.035 4.035 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.297 1.297 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.606 5.606 10 C 0.139 3.861 11 C -0.116 4.116 12 C -0.079 4.079 13 H 0.107 0.893 14 C 0.117 3.883 15 N -0.610 5.610 16 C 0.582 3.418 17 O -0.564 6.564 18 C -0.165 4.165 19 C -0.121 4.121 20 C -0.213 4.213 21 S 0.286 5.714 22 C -0.150 4.150 23 Cl 0.002 6.998 24 C 0.127 3.873 25 C -0.110 4.110 26 H 0.072 0.928 27 C 0.187 3.813 28 H 0.250 0.750 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.206 0.794 37 H 0.073 0.927 38 H 0.071 0.929 39 H -0.006 1.006 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -6.644 -12.613 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.224 1.224 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.330 5.330 10 C 0.013 3.987 11 C -0.155 4.155 12 C -0.097 4.097 13 H 0.125 0.875 14 C -0.005 4.005 15 N -0.342 5.342 16 C 0.370 3.630 17 O -0.445 6.445 18 C -0.185 4.185 19 C -0.149 4.149 20 C -0.349 4.349 21 S 0.550 5.450 22 C -0.297 4.297 23 Cl 0.030 6.970 24 C 0.005 3.995 25 C -0.131 4.131 26 H 0.090 0.910 27 C 0.060 3.940 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.223 0.777 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.012 0.988 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.941 -6.907 -14.434 16.118 hybrid contribution 0.147 0.447 1.829 1.889 sum 2.088 -6.460 -12.604 14.316 Atomic orbital electron populations 1.70039 1.06451 1.25529 1.55523 1.25893 0.96120 1.00788 1.00271 0.85368 0.78753 0.80620 0.76694 1.19345 1.21604 1.22380 1.19363 0.90961 0.83965 1.44145 0.91909 1.44169 1.18941 1.10179 1.59695 1.21045 0.97052 0.87662 0.92920 1.21903 0.95725 0.98744 0.99162 1.22146 0.97647 0.94493 0.95463 0.87473 1.22677 1.01735 0.91989 0.84074 1.48981 1.68992 1.09748 1.06521 1.17421 0.76784 0.87535 0.81258 1.90776 1.53643 1.19007 1.81122 1.20286 1.09649 0.96307 0.92253 1.21470 1.01340 0.90385 1.01664 1.25983 1.07958 1.05962 0.94958 1.82841 1.60137 0.95102 1.06919 1.25535 1.09272 0.97202 0.97658 1.98384 1.87089 1.28461 1.83037 1.22296 1.00035 0.81809 0.95372 1.21910 0.98674 0.97211 0.95262 0.90981 1.19828 0.85998 0.94539 0.93610 0.94072 0.92854 0.95939 0.93462 0.90260 0.90864 0.91180 0.82437 0.77708 0.90859 0.91136 0.98772 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.62 10.63 21.65 0.23 -50.39 16 2 C -0.03 -1.79 5.34 84.86 0.45 -1.33 16 3 Si 0.96 41.73 29.56 68.60 2.03 43.76 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.25 -12.76 9.64 84.03 0.81 -11.95 16 8 H 0.06 3.12 7.83 -2.91 -0.02 3.10 16 9 N -0.61 -27.49 2.83 -705.52 -2.00 -29.49 16 10 C 0.14 5.20 6.52 86.15 0.56 5.76 16 11 C -0.12 -3.54 4.78 30.54 0.15 -3.40 16 12 C -0.08 -2.29 3.58 -9.59 -0.03 -2.32 16 13 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 14 C 0.12 3.36 6.31 86.74 0.55 3.91 16 15 N -0.61 -19.53 3.38 -810.01 -2.74 -22.27 16 16 C 0.58 19.93 7.65 86.55 0.66 20.59 16 17 O -0.56 -21.89 15.72 -4.20 -0.07 -21.96 16 18 C -0.17 -4.89 5.69 -19.84 -0.11 -5.01 16 19 C -0.12 -3.09 8.55 22.70 0.19 -2.90 16 20 C -0.21 -4.13 11.11 66.65 0.74 -3.39 16 21 S 0.29 5.18 23.02 -56.49 -1.30 3.88 16 22 C -0.15 -3.95 6.85 67.35 0.46 -3.49 16 23 Cl 0.00 0.04 27.54 -2.72 -0.07 -0.03 16 24 C 0.13 4.15 4.00 86.41 0.35 4.50 16 25 C -0.11 -3.74 2.82 -11.10 -0.03 -3.77 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 C 0.19 8.11 4.63 85.41 0.40 8.50 16 28 H 0.25 13.29 8.31 -92.70 -0.77 12.52 16 29 H 0.05 1.99 7.97 -2.38 -0.02 1.97 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.57 7.10 -2.39 -0.02 1.55 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.05 7.74 -2.38 -0.02 2.04 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.16 4.32 5.42 -2.91 -0.02 4.31 16 36 H 0.21 2.76 8.06 -2.91 -0.02 2.73 16 37 H 0.07 2.36 6.98 -2.39 -0.02 2.34 16 38 H 0.07 2.54 6.30 -2.38 -0.02 2.53 16 39 H -0.01 -0.28 8.14 -2.39 -0.02 -0.29 16 40 H 0.08 3.74 5.92 -2.39 -0.01 3.72 16 Total: -1.00 -61.66 341.94 2.29 -59.37 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.07 Total: 11.44 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.14 Total: 5.70 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.51 Total: -102.15 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.30 Total: 3.88 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.07 Total: -0.03 kcal Total: -61.66 2.29 -59.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088128708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.272 kcal (2) G-P(sol) polarization free energy of solvation -61.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds