Wall clock time and date at job start Wed Apr 1 2020 01:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00476 * 155.00039 * 11 9 7 13 13 O 1.21516 * 119.99550 * 359.97438 * 12 11 9 14 14 C 1.48157 * 120.00101 * 179.97438 * 12 11 9 15 15 C 1.39946 * 120.88852 * 359.71555 * 14 12 11 16 16 C 1.38048 * 119.13129 * 179.77826 * 15 14 12 17 17 N 1.31844 * 120.98383 * 0.50966 * 16 15 14 18 18 C 1.32232 * 121.97367 * 359.74562 * 17 16 15 19 19 N 1.39848 * 119.62830 * 180.02562 * 18 17 16 20 20 C 1.37172 * 126.48333 * 4.68102 * 19 18 17 21 21 C 1.34627 * 106.82477 * 179.88066 * 20 19 18 22 22 N 1.34152 * 108.21710 * 0.39371 * 21 20 19 23 23 C 1.30483 * 109.36902 * 359.74939 * 22 21 20 24 24 C 1.38908 * 120.74702 * 359.97438 * 18 17 16 25 25 C 1.52999 * 109.47265 * 59.99739 * 9 7 2 26 26 F 1.39898 * 109.46621 * 60.00227 * 25 9 7 27 27 F 1.39899 * 109.47312 * 179.97438 * 25 9 7 28 28 F 1.39896 * 109.47210 * 300.00686 * 25 9 7 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99239 * 335.00116 * 11 9 7 31 31 H 1.07998 * 120.43613 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.50795 * 180.27872 * 16 15 14 33 33 H 1.07994 * 126.58979 * 0.02562 * 20 19 18 34 34 H 1.07994 * 125.89067 * 180.11047 * 21 20 19 35 35 H 1.08006 * 125.72035 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.52830 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 7 2.2028 -3.6128 -0.0005 12 6 1.8366 -4.8124 0.4927 13 8 0.7170 -4.9701 0.9379 14 6 2.7992 -5.9387 0.4921 15 6 4.0912 -5.7793 -0.0213 16 6 4.9601 -6.8518 0.0005 17 7 4.5858 -8.0187 0.4868 18 6 3.3740 -8.2167 0.9774 19 7 3.0292 -9.4748 1.4814 20 6 3.8619 -10.5569 1.6131 21 6 3.1254 -11.5536 2.1391 22 7 1.8750 -11.1018 2.3177 23 6 1.8041 -9.8586 1.9279 24 6 2.4398 -7.1889 0.9987 25 6 0.3707 -2.5799 -1.2494 26 9 1.1746 -2.5056 -2.3919 27 9 -0.3284 -3.7917 -1.2497 28 9 -0.5382 -1.5165 -1.2489 29 1 -0.4850 0.8401 0.0004 30 1 3.0967 -3.4866 -0.3556 31 1 4.4056 -4.8288 -0.4264 32 1 5.9602 -6.7343 -0.3901 33 1 4.9079 -10.6002 1.3481 34 1 3.4791 -12.5469 2.3724 35 1 0.9201 -9.2387 1.9549 36 1 1.4511 -7.3544 1.4006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363530708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:28 Heat of formation + Delta-G solvation = -56.755749 kcal Electronic energy + Delta-G solvation = -29109.774093 eV Core-core repulsion = 24374.596367 eV Total energy + Delta-G solvation = -4735.177726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 5.55 seconds Orbital eigenvalues (eV) -48.50438 -46.16003 -45.76101 -42.56632 -40.61280 -38.89555 -35.02621 -34.52105 -33.15063 -32.60338 -30.47032 -29.49522 -28.66178 -25.09421 -24.66778 -24.36212 -22.32492 -21.44123 -21.01805 -20.28003 -19.19479 -17.59834 -17.14203 -17.01194 -16.79125 -16.52415 -16.10807 -15.97994 -15.56665 -15.22785 -14.93198 -14.56818 -14.28934 -14.15834 -14.06973 -13.76267 -13.64169 -13.28773 -13.08042 -12.68159 -12.55248 -12.46253 -12.32720 -12.09758 -11.95362 -11.32825 -11.06799 -10.99246 -10.96635 -10.58045 -10.40164 -10.30023 -10.19153 -9.86006 -9.67297 -9.09198 -8.87828 -8.71835 -8.55226 -6.37428 -4.63259 0.27605 0.51832 1.90045 2.14244 2.87000 2.97774 3.10959 3.15163 3.17640 3.29453 3.62618 3.94275 4.08423 4.30137 4.37177 4.41856 4.49362 4.58284 4.67855 4.79432 4.99423 5.15720 5.24828 5.30515 5.45018 5.64833 5.69924 5.72133 5.87415 6.01339 6.04192 6.43424 6.69569 6.84134 6.84727 7.25797 7.37315 7.47804 7.74192 7.96268 8.29598 8.49001 9.05341 10.54059 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002847 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.613186 B = 9834.248302 C =10383.870543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.066 3.934 3 Si 0.917 3.083 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.245 3.755 10 H 0.089 0.911 11 N -0.697 5.697 12 C 0.546 3.454 13 O -0.517 6.517 14 C -0.045 4.045 15 C -0.150 4.150 16 C 0.132 3.868 17 N -0.488 5.488 18 C 0.338 3.662 19 N -0.409 5.409 20 C -0.027 4.027 21 C -0.032 4.032 22 N -0.479 5.479 23 C 0.197 3.803 24 C -0.124 4.124 25 C 0.417 3.583 26 F -0.208 7.208 27 F -0.218 7.218 28 F -0.134 7.134 29 H 0.271 0.729 30 H 0.400 0.600 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.214 0.786 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.590 -11.714 0.160 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.097 0.903 9 C 0.140 3.860 10 H 0.107 0.893 11 N -0.347 5.347 12 C 0.330 3.670 13 O -0.393 6.393 14 C -0.057 4.057 15 C -0.171 4.171 16 C -0.026 4.026 17 N -0.201 5.201 18 C 0.110 3.890 19 N -0.091 5.091 20 C -0.157 4.157 21 C -0.177 4.177 22 N -0.196 5.196 23 C -0.084 4.084 24 C -0.147 4.147 25 C 0.361 3.639 26 F -0.190 7.190 27 F -0.200 7.200 28 F -0.115 7.115 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.170 0.830 32 H 0.192 0.808 33 H 0.199 0.801 34 H 0.193 0.807 35 H 0.231 0.769 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.507 -12.773 0.764 15.366 hybrid contribution 0.828 2.043 -0.898 2.380 sum 9.336 -10.730 -0.134 14.224 Atomic orbital electron populations 1.70376 1.05905 1.27774 1.42946 1.25081 0.95185 1.00208 0.93841 0.86236 0.79354 0.81121 0.78982 1.20769 1.19698 1.19734 1.20801 0.93780 0.87910 1.56893 0.90336 1.19839 0.88603 0.85451 0.92106 0.89332 1.46006 1.17492 1.10191 1.60982 1.18055 0.86846 0.82673 0.79413 1.90810 1.20212 1.82686 1.45621 1.20453 0.94533 0.94235 0.96469 1.22502 0.93285 1.01623 0.99737 1.22554 0.99972 0.85973 0.94108 1.66833 1.15995 1.26074 1.11198 1.18001 0.90757 0.84367 0.95829 1.43124 1.11165 1.08347 1.46511 1.22914 0.98563 0.86729 1.07478 1.22407 0.89829 1.00174 1.05302 1.70357 1.20941 1.08119 1.20202 1.25487 0.88549 0.93548 1.00847 1.21651 1.01054 0.91134 1.00881 1.23103 0.80917 0.72912 0.87011 1.92996 1.74391 1.96180 1.55441 1.93075 1.81526 1.48388 1.96969 1.93416 1.68300 1.53651 1.96171 0.91840 0.76464 0.83022 0.80837 0.80119 0.80711 0.76925 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.84 9.50 55.43 0.53 -21.31 16 2 C 0.07 1.63 5.20 -17.82 -0.09 1.54 16 3 Si 0.92 18.99 29.54 -169.99 -5.02 13.97 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.56 -13.18 8.46 -34.44 -0.29 -13.47 16 8 H 0.08 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.25 5.62 2.21 -69.09 -0.15 5.46 16 10 H 0.09 2.28 7.58 -51.93 -0.39 1.88 16 11 N -0.70 -12.68 4.94 -55.78 -0.28 -12.95 16 12 C 0.55 9.66 7.33 -12.19 -0.09 9.57 16 13 O -0.52 -10.95 15.01 5.35 0.08 -10.87 16 14 C -0.05 -0.61 5.91 -104.68 -0.62 -1.23 16 15 C -0.15 -1.53 9.61 -39.01 -0.37 -1.91 16 16 C 0.13 1.20 11.17 -17.62 -0.20 1.00 16 17 N -0.49 -5.54 9.87 -12.34 -0.12 -5.66 16 18 C 0.34 4.13 7.50 -154.42 -1.16 2.97 16 19 N -0.41 -4.88 2.98 -63.84 -0.19 -5.07 16 20 C -0.03 -0.29 11.17 -16.44 -0.18 -0.48 16 21 C -0.03 -0.35 11.85 -17.82 -0.21 -0.56 16 22 N -0.48 -6.20 11.24 -14.46 -0.16 -6.37 16 23 C 0.20 2.32 11.89 -89.59 -1.07 1.25 16 24 C -0.12 -1.58 9.07 -38.83 -0.35 -1.94 16 25 C 0.42 10.04 2.81 37.16 0.10 10.14 16 26 F -0.21 -4.81 16.94 2.25 0.04 -4.77 16 27 F -0.22 -5.21 15.68 2.25 0.04 -5.17 16 28 F -0.13 -3.54 12.91 2.25 0.03 -3.51 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.40 5.97 6.68 -40.82 -0.27 5.70 16 31 H 0.15 1.20 6.53 -52.49 -0.34 0.86 16 32 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.21 1.93 7.07 -52.48 -0.37 1.56 16 36 H 0.16 1.90 6.46 -52.49 -0.34 1.56 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -30.98 328.65 -7.32 -38.30 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.53 Total: 6.12 kcal Atomic # 6 Polarization: 17.03 SS G_CDS: -4.68 Total: 12.35 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.22 Total: -51.36 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 9 Polarization: -13.55 SS G_CDS: 0.10 Total: -13.45 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.98 -7.32 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.460 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.55 seconds