Wall clock time and date at job start Wed Apr 1 2020 01:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 11 11 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 12 12 C 1.34774 * 120.00476 * 155.00039 * 11 9 7 13 13 O 1.21516 * 119.99550 * 359.97438 * 12 11 9 14 14 C 1.48157 * 120.00101 * 179.97438 * 12 11 9 15 15 C 1.39946 * 120.88852 * 359.71555 * 14 12 11 16 16 C 1.38048 * 119.13129 * 179.77826 * 15 14 12 17 17 N 1.31844 * 120.98383 * 0.50966 * 16 15 14 18 18 C 1.32232 * 121.97367 * 359.74562 * 17 16 15 19 19 N 1.39848 * 119.62830 * 180.02562 * 18 17 16 20 20 C 1.37172 * 126.48333 * 4.68102 * 19 18 17 21 21 C 1.34627 * 106.82477 * 179.88066 * 20 19 18 22 22 N 1.34152 * 108.21710 * 0.39371 * 21 20 19 23 23 C 1.30483 * 109.36902 * 359.74939 * 22 21 20 24 24 C 1.38908 * 120.74702 * 359.97438 * 18 17 16 25 25 C 1.52999 * 109.47265 * 59.99739 * 9 7 2 26 26 F 1.39898 * 109.46621 * 60.00227 * 25 9 7 27 27 F 1.39899 * 109.47312 * 179.97438 * 25 9 7 28 28 F 1.39896 * 109.47210 * 300.00686 * 25 9 7 29 29 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 30 30 H 0.97008 * 119.99239 * 335.00116 * 11 9 7 31 31 H 1.07998 * 120.43613 * 359.97438 * 15 14 12 32 32 H 1.08002 * 119.50795 * 180.27872 * 16 15 14 33 33 H 1.07994 * 126.58979 * 0.02562 * 20 19 18 34 34 H 1.07994 * 125.89067 * 180.11047 * 21 20 19 35 35 H 1.08006 * 125.72035 * 179.97438 * 23 22 21 36 36 H 1.08001 * 120.52830 * 180.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6246 -2.5570 0.8898 11 7 2.2028 -3.6128 -0.0005 12 6 1.8366 -4.8124 0.4927 13 8 0.7170 -4.9701 0.9379 14 6 2.7992 -5.9387 0.4921 15 6 4.0912 -5.7793 -0.0213 16 6 4.9601 -6.8518 0.0005 17 7 4.5858 -8.0187 0.4868 18 6 3.3740 -8.2167 0.9774 19 7 3.0292 -9.4748 1.4814 20 6 3.8619 -10.5569 1.6131 21 6 3.1254 -11.5536 2.1391 22 7 1.8750 -11.1018 2.3177 23 6 1.8041 -9.8586 1.9279 24 6 2.4398 -7.1889 0.9987 25 6 0.3707 -2.5799 -1.2494 26 9 1.1746 -2.5056 -2.3919 27 9 -0.3284 -3.7917 -1.2497 28 9 -0.5382 -1.5165 -1.2489 29 1 -0.4850 0.8401 0.0004 30 1 3.0967 -3.4866 -0.3556 31 1 4.4056 -4.8288 -0.4264 32 1 5.9602 -6.7343 -0.3901 33 1 4.9079 -10.6002 1.3481 34 1 3.4791 -12.5469 2.3724 35 1 0.9201 -9.2387 1.9549 36 1 1.4511 -7.3544 1.4006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363530708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:21 Heat of formation + Delta-G solvation = -74.525842 kcal Electronic energy + Delta-G solvation = -29110.544662 eV Core-core repulsion = 24374.596367 eV Total energy + Delta-G solvation = -4735.948295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.44667 -48.08202 -47.75320 -43.42705 -41.64727 -40.20252 -36.67478 -35.46944 -34.57665 -33.89049 -31.41600 -30.33024 -30.29608 -26.68343 -26.07307 -25.27830 -23.65653 -22.71000 -21.95171 -21.55128 -20.37024 -19.09573 -18.93175 -18.69017 -18.35895 -17.93575 -17.19048 -16.92811 -16.83692 -16.76191 -16.26357 -15.88206 -15.48185 -15.03165 -14.98705 -14.98124 -14.89867 -14.72860 -14.56371 -14.48941 -14.38087 -14.30459 -14.06112 -13.91820 -13.18055 -13.08192 -12.80985 -12.61452 -12.25272 -11.92525 -11.64163 -11.50224 -11.26967 -11.19681 -10.87884 -10.69190 -10.21460 -9.94296 -9.55133 -8.22760 -6.54281 -0.66181 -0.39261 1.04865 1.28081 1.48800 1.50205 1.58793 1.72985 1.92524 2.03305 2.37116 2.47691 2.65574 2.93293 3.13340 3.30095 3.44419 3.61420 3.72759 3.75785 3.78522 3.82557 4.10870 4.16878 4.33725 4.45003 4.52347 4.61817 4.81313 4.87846 5.03890 5.20625 5.28384 5.48889 5.62172 5.64428 5.98982 6.47289 6.52391 6.53601 6.88831 7.05119 7.20213 8.69593 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002847 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.613186 B = 9834.248302 C =10383.870543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.016 3.984 3 Si 0.982 3.018 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.563 4.563 8 H 0.099 0.901 9 C 0.252 3.748 10 H 0.052 0.948 11 N -0.690 5.690 12 C 0.546 3.454 13 O -0.561 6.561 14 C -0.063 4.063 15 C -0.135 4.135 16 C 0.145 3.855 17 N -0.491 5.491 18 C 0.331 3.669 19 N -0.415 5.415 20 C -0.029 4.029 21 C -0.041 4.041 22 N -0.508 5.508 23 C 0.186 3.814 24 C -0.132 4.132 25 C 0.413 3.587 26 F -0.201 7.201 27 F -0.220 7.220 28 F -0.150 7.150 29 H 0.269 0.731 30 H 0.417 0.583 31 H 0.179 0.821 32 H 0.221 0.779 33 H 0.202 0.798 34 H 0.200 0.800 35 H 0.227 0.773 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 -11.840 -0.512 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.599 4.599 8 H 0.117 0.883 9 C 0.145 3.855 10 H 0.070 0.930 11 N -0.341 5.341 12 C 0.333 3.667 13 O -0.440 6.440 14 C -0.074 4.074 15 C -0.156 4.156 16 C -0.013 4.013 17 N -0.204 5.204 18 C 0.104 3.896 19 N -0.097 5.097 20 C -0.158 4.158 21 C -0.185 4.185 22 N -0.225 5.225 23 C -0.095 4.095 24 C -0.155 4.155 25 C 0.356 3.644 26 F -0.183 7.183 27 F -0.202 7.202 28 F -0.131 7.131 29 H 0.079 0.921 30 H 0.256 0.744 31 H 0.196 0.804 32 H 0.238 0.762 33 H 0.219 0.781 34 H 0.217 0.783 35 H 0.243 0.757 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.905 -12.933 0.088 17.578 hybrid contribution -0.180 2.005 -0.707 2.133 sum 11.725 -10.928 -0.619 16.040 Atomic orbital electron populations 1.70518 1.07550 1.28322 1.44400 1.25986 0.95841 1.03708 0.93409 0.85221 0.77999 0.76747 0.79477 1.21406 1.18611 1.18833 1.21206 0.94779 0.87984 1.55950 0.88332 1.19407 0.88847 0.87149 0.90048 0.93012 1.45774 1.17528 1.09425 1.61389 1.18643 0.87008 0.83188 0.77897 1.90783 1.22453 1.83430 1.47323 1.20081 0.95213 0.92801 0.99352 1.22820 0.91584 1.03207 0.97978 1.23322 1.01301 0.84497 0.92193 1.66955 1.15282 1.27135 1.11010 1.17985 0.91003 0.84268 0.96319 1.43219 1.11383 1.08581 1.46541 1.23305 0.99312 0.86203 1.07023 1.22897 0.89198 1.01389 1.05065 1.70356 1.22258 1.08807 1.21124 1.25818 0.89217 0.93648 1.00860 1.21612 1.01261 0.91371 1.01293 1.23312 0.80904 0.72412 0.87736 1.92994 1.74059 1.96137 1.55110 1.93067 1.81679 1.48416 1.97020 1.93386 1.68958 1.54465 1.96299 0.92128 0.74405 0.80387 0.76248 0.78142 0.78276 0.75655 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.38 9.50 21.45 0.20 -46.18 16 2 C 0.02 0.79 5.20 84.66 0.44 1.23 16 3 Si 0.98 38.08 29.54 68.60 2.03 40.11 16 4 H -0.29 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 7 C -0.56 -26.17 8.46 25.60 0.22 -25.96 16 8 H 0.10 4.08 7.74 -2.91 -0.02 4.05 16 9 C 0.25 11.68 2.21 44.24 0.10 11.78 16 10 H 0.05 2.79 7.58 -2.38 -0.02 2.77 16 11 N -0.69 -24.63 4.94 -448.69 -2.22 -26.84 16 12 C 0.55 19.36 7.33 86.88 0.64 20.00 16 13 O -0.56 -24.69 15.01 -3.76 -0.06 -24.75 16 14 C -0.06 -1.63 5.91 -19.90 -0.12 -1.74 16 15 C -0.14 -2.29 9.61 22.64 0.22 -2.08 16 16 C 0.14 2.01 11.17 84.65 0.95 2.96 16 17 N -0.49 -9.64 9.87 -192.95 -1.90 -11.54 16 18 C 0.33 7.61 7.50 132.77 1.00 8.61 16 19 N -0.41 -9.52 2.98 -355.90 -1.06 -10.58 16 20 C -0.03 -0.58 11.17 83.03 0.93 0.34 16 21 C -0.04 -0.86 11.85 83.51 0.99 0.13 16 22 N -0.51 -13.04 11.24 -199.67 -2.24 -15.28 16 23 C 0.19 4.37 11.89 179.99 2.14 6.51 16 24 C -0.13 -3.33 9.07 22.76 0.21 -3.12 16 25 C 0.41 20.14 2.81 71.98 0.20 20.34 16 26 F -0.20 -9.17 16.94 44.97 0.76 -8.41 16 27 F -0.22 -10.76 15.68 44.97 0.70 -10.05 16 28 F -0.15 -8.10 12.91 44.97 0.58 -7.52 16 29 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 30 H 0.42 11.53 6.68 -92.70 -0.62 10.91 16 31 H 0.18 2.02 6.53 -2.91 -0.02 2.00 16 32 H 0.22 1.01 8.06 -2.91 -0.02 0.99 16 33 H 0.20 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 35 H 0.23 4.29 7.07 -2.91 -0.02 4.27 16 36 H 0.15 3.83 6.46 -2.91 -0.02 3.81 16 Total: -1.00 -68.52 328.65 5.25 -63.27 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.56 Total: 18.75 kcal Atomic # 6 Polarization: 31.11 SS G_CDS: 7.90 Total: 39.01 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.23 Total: -110.42 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 9 Polarization: -28.02 SS G_CDS: 2.05 Total: -25.98 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -68.52 5.25 -63.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363530708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.256 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds