Wall clock time and date at job start Wed Apr 1 2020 01:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54521 * 291.62885 * 12 11 10 14 14 O 1.42108 * 110.54484 * 68.37707 * 12 11 10 15 15 N 1.65597 * 104.45133 * 180.02562 * 12 11 10 16 16 C 1.47431 * 125.64768 * 269.69164 * 15 12 11 17 17 C 1.55124 * 104.71870 * 155.81646 * 16 15 12 18 18 C 1.55149 * 101.48859 * 37.29833 * 17 16 15 19 19 H 1.08998 * 110.87396 * 82.76711 * 18 17 16 20 20 C 1.53002 * 110.71968 * 205.96569 * 18 17 16 21 21 S 1.81400 * 109.47364 * 288.52013 * 20 18 17 22 22 N 1.65595 * 104.44907 * 179.97438 * 21 20 18 23 23 O 1.42093 * 110.54400 * 291.62578 * 21 20 18 24 24 O 1.42099 * 110.53953 * 68.37751 * 21 20 18 25 25 C 1.47020 * 125.64909 * 89.99995 * 15 12 11 26 26 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08994 * 110.36579 * 274.74892 * 16 15 12 34 34 H 1.09003 * 110.36548 * 37.07074 * 16 15 12 35 35 H 1.09002 * 111.19476 * 279.18606 * 17 16 15 36 36 H 1.09009 * 110.93616 * 155.29499 * 17 16 15 37 37 H 1.09003 * 109.47236 * 48.52426 * 20 18 17 38 38 H 1.09000 * 109.47193 * 168.51905 * 20 18 17 39 39 H 0.97007 * 119.99761 * 150.00040 * 22 21 20 40 40 H 0.97003 * 120.00638 * 330.00554 * 22 21 20 41 41 H 1.08999 * 109.88309 * 300.44127 * 25 15 12 42 42 H 1.08997 * 109.88455 * 61.60952 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 8 3.3557 -6.4270 -1.2350 14 8 3.3555 -6.4258 1.2391 15 7 1.7084 -7.7221 0.0019 16 6 1.2201 -8.4292 1.1999 17 6 -0.0552 -9.1740 0.7255 18 6 0.3550 -9.6080 -0.7064 19 1 0.9408 -10.5268 -0.6809 20 6 -0.8790 -9.7798 -1.5944 21 16 -1.7879 -11.2651 -1.0859 22 7 -3.0831 -11.3297 -2.1158 23 8 -1.0404 -12.4350 -1.3883 24 8 -2.3699 -11.0786 0.1969 25 6 1.2171 -8.4241 -1.1928 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6045 -0.8894 31 1 0.8537 -5.0446 0.8914 32 1 0.8531 -5.0451 -0.8886 33 1 1.9680 -9.1393 1.5524 34 1 0.9722 -7.7163 1.9864 35 1 -0.9156 -8.5051 0.6997 36 1 -0.2563 -10.0415 1.3542 37 1 -1.5238 -8.9068 -1.4933 38 1 -0.5673 -9.8827 -2.6338 39 1 -3.4667 -12.1867 -2.3595 40 1 -3.4583 -10.5106 -2.4754 41 1 0.6119 -7.7484 -1.7971 42 1 2.0591 -8.7943 -1.7777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001561982921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:52 Heat of formation + Delta-G solvation = -157.692910 kcal Electronic energy + Delta-G solvation = -25594.075056 eV Core-core repulsion = 21634.972259 eV Total energy + Delta-G solvation = -3959.102798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.15235 -37.45064 -36.97983 -36.35721 -35.81728 -34.71727 -33.68265 -33.30075 -32.22503 -29.92415 -27.86564 -27.08746 -23.80683 -22.72392 -21.28353 -20.59739 -19.88932 -18.98333 -18.17782 -17.88593 -17.55683 -17.02214 -16.65033 -16.10599 -15.85906 -15.64644 -15.31729 -14.53229 -14.49688 -14.39846 -14.08479 -13.90074 -13.30582 -12.86926 -12.64108 -12.61654 -12.52759 -12.38376 -12.32478 -12.26909 -12.01566 -11.91913 -11.83453 -11.65518 -11.58402 -11.28670 -11.22030 -11.10335 -10.95282 -10.89247 -10.78771 -10.46301 -9.99936 -9.57665 -9.27863 -8.99017 -8.44354 -6.09397 -4.12508 -0.25059 0.33170 2.37813 2.66292 3.18202 3.27917 3.34173 3.38309 3.69660 3.76371 3.93471 3.97321 4.11644 4.33043 4.39454 4.55027 4.79712 4.83917 4.97814 5.01381 5.08361 5.12220 5.23750 5.27180 5.44421 5.46971 5.48316 5.54795 5.74394 5.80682 5.88649 6.10612 6.25528 6.39436 6.52958 6.82140 7.52349 7.61976 7.88500 8.28819 8.93687 9.52390 11.01837 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.002338 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.234352 B =11973.377497 C =12882.181939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.613 3.387 13 O -0.957 6.957 14 O -0.954 6.954 15 N -1.019 6.019 16 C 0.123 3.877 17 C -0.147 4.147 18 C -0.090 4.090 19 H 0.103 0.897 20 C -0.619 4.619 21 S 2.614 3.386 22 N -1.252 6.252 23 O -0.963 6.963 24 O -0.954 6.954 25 C 0.134 3.866 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.420 0.580 40 H 0.414 0.586 41 H 0.073 0.927 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 -24.259 -4.316 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.711 3.289 13 O -0.947 6.947 14 O -0.945 6.945 15 N -0.856 5.856 16 C -0.003 4.003 17 C -0.186 4.186 18 C -0.111 4.111 19 H 0.121 0.879 20 C -0.749 4.749 21 S 2.705 3.295 22 N -0.925 5.925 23 O -0.952 6.952 24 O -0.943 6.943 25 C 0.007 3.993 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.250 0.750 40 H 0.240 0.760 41 H 0.091 0.909 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.445 -24.737 -3.480 25.567 hybrid contribution -0.680 1.797 -0.851 2.102 sum -6.124 -22.940 -4.331 24.135 Atomic orbital electron populations 1.69955 1.06103 1.26816 1.50581 1.25025 0.94895 0.99399 0.95060 0.86545 0.79891 0.83121 0.78203 1.20556 1.21146 1.19724 1.21253 0.93268 0.90869 1.51106 0.92351 1.19058 0.93505 0.90438 0.97706 1.21515 0.99427 0.91640 1.01995 1.30590 1.16427 1.15769 1.11180 1.05115 0.75336 0.74305 0.74174 1.93563 1.70038 1.85755 1.45387 1.93575 1.69892 1.85728 1.45304 1.58869 1.70782 1.43446 1.12529 1.22003 0.94774 0.96236 0.87238 1.23272 0.98703 1.02005 0.94597 1.21964 0.93766 1.00857 0.94541 0.87893 1.30540 1.10771 1.22400 1.11147 1.04782 0.74377 0.76014 0.74312 1.53231 1.52231 1.17033 1.69988 1.93620 1.72212 1.44901 1.84493 1.93644 1.75434 1.86281 1.38935 1.21648 0.97552 0.92855 0.87251 0.92875 0.96175 0.96101 0.91532 0.91568 0.85393 0.85518 0.90706 0.89844 0.89050 0.88695 0.84093 0.83912 0.75015 0.75982 0.90872 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.61 -9.07 6.18 37.16 0.23 -8.84 16 12 S 2.61 37.98 5.65 -107.50 -0.61 37.38 16 13 O -0.96 -16.43 17.60 -57.54 -1.01 -17.44 16 14 O -0.95 -16.57 17.60 -57.54 -1.01 -17.59 16 15 N -1.02 -11.08 3.62 -111.29 -0.40 -11.49 16 16 C 0.12 1.11 6.90 -2.41 -0.02 1.09 16 17 C -0.15 -1.05 5.69 -24.47 -0.14 -1.19 16 18 C -0.09 -0.58 2.92 -88.79 -0.26 -0.84 16 19 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.62 -2.31 5.51 37.16 0.20 -2.10 16 21 S 2.61 15.06 5.82 -107.50 -0.63 14.43 16 22 N -1.25 -3.57 9.36 60.35 0.57 -3.01 16 23 O -0.96 -9.18 18.10 -57.54 -1.04 -10.22 16 24 O -0.95 -8.88 17.14 -57.54 -0.99 -9.87 16 25 C 0.13 1.14 6.49 -3.06 -0.02 1.12 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.58 7.94 -51.93 -0.41 0.16 16 36 H 0.09 0.61 7.85 -51.92 -0.41 0.20 16 37 H 0.14 0.25 8.00 -51.92 -0.42 -0.16 16 38 H 0.14 0.22 8.14 -51.92 -0.42 -0.20 16 39 H 0.42 0.94 8.96 -34.47 -0.31 0.63 16 40 H 0.41 0.12 8.96 -34.47 -0.31 -0.19 16 41 H 0.07 0.51 7.82 -51.93 -0.41 0.10 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -40.84 372.56 -10.93 -51.78 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -6.45 Total: -4.54 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -0.69 Total: -25.85 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.90 Total: -40.08 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -4.05 Total: -55.12 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -1.23 Total: 51.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -40.84 -10.93 -51.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561982921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.916 kcal (2) G-P(sol) polarization free energy of solvation -40.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds