Wall clock time and date at job start Wed Apr 1 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54521 * 291.62885 * 12 11 10 14 14 O 1.42108 * 110.54484 * 68.37707 * 12 11 10 15 15 N 1.65597 * 104.45133 * 180.02562 * 12 11 10 16 16 C 1.47431 * 125.64768 * 269.69164 * 15 12 11 17 17 C 1.55124 * 104.71870 * 155.81646 * 16 15 12 18 18 C 1.55149 * 101.48859 * 37.29833 * 17 16 15 19 19 H 1.08998 * 110.87396 * 82.76711 * 18 17 16 20 20 C 1.53002 * 110.71968 * 205.96569 * 18 17 16 21 21 S 1.81400 * 109.47364 * 288.52013 * 20 18 17 22 22 N 1.65595 * 104.44907 * 179.97438 * 21 20 18 23 23 O 1.42093 * 110.54400 * 291.62578 * 21 20 18 24 24 O 1.42099 * 110.53953 * 68.37751 * 21 20 18 25 25 C 1.47020 * 125.64909 * 89.99995 * 15 12 11 26 26 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08994 * 110.36579 * 274.74892 * 16 15 12 34 34 H 1.09003 * 110.36548 * 37.07074 * 16 15 12 35 35 H 1.09002 * 111.19476 * 279.18606 * 17 16 15 36 36 H 1.09009 * 110.93616 * 155.29499 * 17 16 15 37 37 H 1.09003 * 109.47236 * 48.52426 * 20 18 17 38 38 H 1.09000 * 109.47193 * 168.51905 * 20 18 17 39 39 H 0.97007 * 119.99761 * 150.00040 * 22 21 20 40 40 H 0.97003 * 120.00638 * 330.00554 * 22 21 20 41 41 H 1.08999 * 109.88309 * 300.44127 * 25 15 12 42 42 H 1.08997 * 109.88455 * 61.60952 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 8 3.3557 -6.4270 -1.2350 14 8 3.3555 -6.4258 1.2391 15 7 1.7084 -7.7221 0.0019 16 6 1.2201 -8.4292 1.1999 17 6 -0.0552 -9.1740 0.7255 18 6 0.3550 -9.6080 -0.7064 19 1 0.9408 -10.5268 -0.6809 20 6 -0.8790 -9.7798 -1.5944 21 16 -1.7879 -11.2651 -1.0859 22 7 -3.0831 -11.3297 -2.1158 23 8 -1.0404 -12.4350 -1.3883 24 8 -2.3699 -11.0786 0.1969 25 6 1.2171 -8.4241 -1.1928 26 1 -0.4850 0.8400 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8718 -3.6044 0.8905 30 1 2.8717 -3.6045 -0.8894 31 1 0.8537 -5.0446 0.8914 32 1 0.8531 -5.0451 -0.8886 33 1 1.9680 -9.1393 1.5524 34 1 0.9722 -7.7163 1.9864 35 1 -0.9156 -8.5051 0.6997 36 1 -0.2563 -10.0415 1.3542 37 1 -1.5238 -8.9068 -1.4933 38 1 -0.5673 -9.8827 -2.6338 39 1 -3.4667 -12.1867 -2.3595 40 1 -3.4583 -10.5106 -2.4754 41 1 0.6119 -7.7484 -1.7971 42 1 2.0591 -8.7943 -1.7777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001561982921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:51 Heat of formation + Delta-G solvation = -192.872596 kcal Electronic energy + Delta-G solvation = -25595.600562 eV Core-core repulsion = 21634.972259 eV Total energy + Delta-G solvation = -3960.628303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.78942 -38.24855 -38.01708 -37.09365 -36.92057 -36.47988 -34.17473 -33.96684 -33.90630 -30.55828 -29.66727 -27.65503 -25.63275 -23.52944 -22.27645 -21.81357 -20.31806 -20.01036 -18.82383 -18.63661 -18.51793 -18.10153 -17.58500 -17.18564 -17.05753 -16.52527 -16.30578 -15.93899 -15.76902 -15.05085 -14.77756 -14.71007 -14.49414 -14.08140 -13.92067 -13.52073 -13.40511 -13.27947 -13.20731 -13.15417 -13.10643 -13.00924 -12.97267 -12.93227 -12.76612 -12.64058 -12.39717 -12.17442 -12.12911 -11.77723 -11.72260 -11.54525 -11.39263 -11.15922 -11.08271 -10.58293 -9.96096 -8.23813 -6.34583 -0.85124 -0.65332 1.39861 1.40323 1.51719 1.64277 2.03579 2.39060 2.76659 2.77955 3.00289 3.09880 3.29051 3.41000 3.55962 3.60450 3.74714 3.90554 4.13330 4.30094 4.35019 4.37895 4.46899 4.53223 4.62213 4.67224 4.85643 4.91105 4.95158 4.97549 5.02915 5.11210 5.24766 5.32915 5.38021 5.44292 5.61826 5.78381 6.18760 6.41498 6.80924 7.34768 8.87607 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.018317 B = 0.002338 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.234352 B =11973.377497 C =12882.181939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.107 4.107 11 C -0.607 4.607 12 S 2.640 3.360 13 O -0.984 6.984 14 O -0.986 6.986 15 N -1.016 6.016 16 C 0.110 3.890 17 C -0.148 4.148 18 C -0.093 4.093 19 H 0.108 0.892 20 C -0.605 4.605 21 S 2.626 3.374 22 N -1.242 6.242 23 O -1.005 7.005 24 O -0.995 6.995 25 C 0.120 3.880 26 H 0.265 0.735 27 H 0.005 0.995 28 H 0.003 0.997 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.424 0.576 40 H 0.427 0.573 41 H 0.094 0.906 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.119 -24.399 -5.259 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.738 4.738 12 S 2.738 3.262 13 O -0.974 6.974 14 O -0.976 6.976 15 N -0.855 5.855 16 C -0.015 4.015 17 C -0.187 4.187 18 C -0.114 4.114 19 H 0.126 0.874 20 C -0.737 4.737 21 S 2.719 3.281 22 N -0.918 5.918 23 O -0.995 6.995 24 O -0.984 6.984 25 C -0.006 4.006 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.186 0.814 38 H 0.190 0.810 39 H 0.255 0.745 40 H 0.257 0.743 41 H 0.112 0.888 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.915 -24.891 -4.425 25.964 hybrid contribution -0.580 1.799 -0.581 1.978 sum -6.496 -23.092 -5.006 24.505 Atomic orbital electron populations 1.70061 1.07574 1.27908 1.51351 1.25918 0.95817 1.03162 0.94577 0.85494 0.78693 0.78596 0.78591 1.19651 1.20540 1.19024 1.21742 0.93720 0.92558 1.51073 0.92254 1.18952 0.93973 0.91705 0.95984 1.21323 0.98734 0.92569 1.02019 1.30536 1.16641 1.13406 1.13170 1.04009 0.74982 0.74468 0.72778 1.93522 1.71146 1.86364 1.46409 1.93531 1.71148 1.86386 1.46584 1.58507 1.70553 1.42119 1.14327 1.22266 0.95909 0.96500 0.86792 1.23332 0.97968 1.02206 0.95153 1.22005 0.94620 1.00296 0.94488 0.87384 1.30431 1.09585 1.21526 1.12119 1.04122 0.74312 0.75891 0.73733 1.52904 1.51514 1.18060 1.69356 1.93567 1.73295 1.47689 1.84956 1.93600 1.76315 1.86913 1.41540 1.21979 0.98273 0.93821 0.86526 0.92602 0.97687 0.97872 0.91747 0.91510 0.83747 0.83407 0.90477 0.89450 0.87919 0.88184 0.81361 0.81009 0.74500 0.74317 0.88768 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.11 -4.26 5.16 30.60 0.16 -4.10 16 11 C -0.61 -17.34 6.18 71.98 0.44 -16.90 16 12 S 2.64 74.01 5.65 -56.49 -0.32 73.69 16 13 O -0.98 -32.84 17.60 -127.65 -2.25 -35.09 16 14 O -0.99 -33.84 17.60 -127.65 -2.25 -36.08 16 15 N -1.02 -20.25 3.62 -506.02 -1.83 -22.08 16 16 C 0.11 1.82 6.90 86.93 0.60 2.42 16 17 C -0.15 -1.79 5.69 32.06 0.18 -1.61 16 18 C -0.09 -0.95 2.92 -9.61 -0.03 -0.98 16 19 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 20 C -0.60 -2.44 5.51 71.98 0.40 -2.04 16 21 S 2.63 25.99 5.82 -56.49 -0.33 25.66 16 22 N -1.24 -4.58 9.36 37.02 0.35 -4.23 16 23 O -1.01 -18.42 18.10 -127.65 -2.31 -20.73 16 24 O -0.99 -17.51 17.14 -127.65 -2.19 -19.70 16 25 C 0.12 1.71 6.49 86.73 0.56 2.28 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.14 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.01 7.94 -2.39 -0.02 0.99 16 36 H 0.10 1.14 7.85 -2.38 -0.02 1.12 16 37 H 0.17 -0.16 8.00 -2.39 -0.02 -0.18 16 38 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.42 1.25 8.96 -96.74 -0.87 0.38 16 40 H 0.43 -0.90 8.96 -96.74 -0.87 -1.77 16 41 H 0.09 0.95 7.82 -2.39 -0.02 0.93 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -88.65 372.56 -6.35 -95.00 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -0.70 Total: 1.82 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 3.16 Total: -49.35 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -1.20 Total: -80.95 kcal Atomic # 8 Polarization: -102.61 SS G_CDS: -8.99 Total: -111.60 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 100.00 SS G_CDS: -0.65 Total: 99.35 kcal Total: -88.65 -6.35 -95.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001561982921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.871 kcal (2) G-P(sol) polarization free energy of solvation -88.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds