Wall clock time and date at job start Wed Apr 1 2020 00:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47274 * 269.99736 * 3 2 1 5 5 H 1.48501 * 109.46967 * 30.00319 * 3 2 1 6 6 H 1.48502 * 109.46998 * 149.99714 * 3 2 1 7 7 C 1.38987 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37313 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.36498 * 126.07051 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50594 * 179.97438 * 10 9 7 12 12 N 1.40537 * 126.08358 * 180.26049 * 11 10 9 13 13 C 1.34776 * 119.99992 * 179.71012 * 12 11 10 14 14 O 1.21627 * 120.00046 * 0.02562 * 13 12 11 15 15 C 1.47425 * 119.99822 * 179.97438 * 13 12 11 16 16 C 1.39734 * 120.20735 * 354.07366 * 15 13 12 17 17 C 1.37755 * 119.92077 * 179.97438 * 16 15 13 18 18 C 1.38606 * 120.35581 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.78737 * 179.97438 * 18 17 16 20 20 F 1.39893 * 109.47632 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47242 * 120.00324 * 19 18 17 22 22 F 1.39903 * 109.46652 * 239.99480 * 19 18 17 23 23 C 1.37964 * 120.42251 * 359.97438 * 18 17 16 24 24 C 1.38952 * 120.06298 * 359.74444 * 23 18 17 25 25 N 1.38886 * 120.17642 * 180.25518 * 24 23 18 26 26 C 1.40658 * 107.82794 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.39217 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 29 29 H 1.07997 * 126.24764 * 359.95636 * 10 9 7 30 30 H 0.97002 * 120.00228 * 359.71777 * 12 11 10 31 31 H 1.07995 * 120.04176 * 0.02562 * 16 15 13 32 32 H 1.08005 * 119.81893 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.97272 * 180.02562 * 23 18 17 34 34 H 0.97001 * 120.00171 * 185.73469 * 25 24 23 35 35 H 0.96999 * 120.00237 * 5.72454 * 25 24 23 36 36 H 1.08007 * 125.80275 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3214 -2.3929 0.0005 10 6 1.8751 -3.6405 0.0015 11 6 0.8578 -4.5386 0.0017 12 7 0.9889 -5.9378 0.0078 13 6 -0.1103 -6.7176 0.0132 14 8 -1.2158 -6.2104 0.0122 15 6 0.0273 -8.1854 0.0190 16 6 1.2885 -8.7738 -0.1057 17 6 1.4103 -10.1459 -0.0990 18 6 0.2875 -10.9482 0.0303 19 6 0.4355 -12.4479 0.0355 20 9 1.7864 -12.7837 -0.1027 21 9 -0.0519 -12.9604 1.2426 22 9 -0.2912 -12.9917 -1.0292 23 6 -0.9647 -10.3826 0.1544 24 6 -1.1072 -9.0004 0.1556 25 7 -2.3661 -8.4284 0.2857 26 6 -0.3513 -3.8197 0.0014 27 7 -0.0714 -2.5409 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8708 0.0018 30 1 1.8705 -6.3423 0.0083 31 1 2.1669 -8.1536 -0.2064 32 1 2.3861 -10.5990 -0.1951 33 1 -1.8346 -11.0146 0.2551 34 1 -2.4733 -7.4679 0.2030 35 1 -3.1382 -8.9894 0.4590 36 1 -1.3420 -4.2497 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625845708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:13 Heat of formation + Delta-G solvation = -66.893095 kcal Electronic energy + Delta-G solvation = -28011.570688 eV Core-core repulsion = 23275.953374 eV Total energy + Delta-G solvation = -4735.617314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 5.15 seconds Orbital eigenvalues (eV) -50.38834 -47.90426 -47.84654 -40.56701 -39.54081 -38.11704 -35.24973 -34.07856 -33.33017 -32.05651 -30.28922 -29.11937 -27.97015 -26.59376 -24.86787 -23.16630 -22.51895 -21.25834 -20.50049 -19.52551 -18.73561 -18.70944 -18.64286 -17.79939 -17.25814 -16.72137 -15.95761 -15.53092 -15.34662 -14.95932 -14.87866 -14.72231 -14.65326 -14.28645 -14.16820 -14.01087 -14.00475 -13.95195 -13.70737 -13.47942 -13.19330 -12.98537 -12.90827 -12.17532 -11.74238 -11.62630 -11.48618 -11.30950 -11.03935 -10.99701 -10.57404 -10.30165 -9.45337 -9.36590 -9.23672 -8.88377 -8.13486 -7.81253 -6.77369 -6.61637 -4.28740 0.42640 1.26557 2.40574 2.67479 2.95024 3.01558 3.06911 3.38925 3.45452 3.50353 3.70880 3.76449 3.82689 3.93055 4.19976 4.38294 4.50042 4.62236 4.84857 4.96754 4.98535 5.05934 5.27761 5.45368 5.73032 5.90536 6.00939 6.17963 6.32644 6.40949 6.80157 6.87730 6.96750 7.15367 7.34300 7.79039 7.81071 8.06118 8.20454 8.54824 8.73655 9.30644 9.59547 10.34239 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.033384 B = 0.002096 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.518952 B =13353.505562 C =14013.917690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.083 4.083 11 C -0.064 4.064 12 N -0.609 5.609 13 C 0.551 3.449 14 O -0.544 6.544 15 C -0.184 4.184 16 C -0.037 4.037 17 C -0.151 4.151 18 C -0.113 4.113 19 C 0.507 3.493 20 F -0.176 7.176 21 F -0.177 7.177 22 F -0.177 7.177 23 C -0.166 4.166 24 C 0.279 3.721 25 N -0.849 5.849 26 C -0.030 4.030 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.147 0.853 30 H 0.398 0.602 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.423 0.577 35 H 0.393 0.607 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -20.408 0.284 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.454 4.454 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.234 4.234 11 C -0.169 4.169 12 N -0.250 5.250 13 C 0.340 3.660 14 O -0.425 6.425 15 C -0.193 4.193 16 C -0.057 4.057 17 C -0.172 4.172 18 C -0.115 4.115 19 C 0.453 3.547 20 F -0.157 7.157 21 F -0.158 7.158 22 F -0.158 7.158 23 C -0.189 4.189 24 C 0.166 3.834 25 N -0.395 5.395 26 C -0.205 4.205 27 N -0.092 5.092 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.233 0.767 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.268 0.732 35 H 0.221 0.779 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.522 -18.602 0.283 18.611 hybrid contribution 0.990 -0.648 0.034 1.184 sum 1.512 -19.250 0.316 19.312 Atomic orbital electron populations 1.70213 1.06158 1.28087 1.35052 1.25656 0.95725 1.00338 0.95427 0.85815 0.79404 0.79856 0.79017 1.19543 1.20055 1.18762 1.19896 0.91709 0.80513 1.53325 0.86527 1.44562 1.04064 1.03330 1.38772 1.21270 0.96877 0.85345 1.19881 1.17245 0.94450 0.80932 1.24320 1.42318 1.08047 1.04695 1.69914 1.17750 0.84523 0.85272 0.78473 1.90294 1.25403 1.73898 1.52858 1.19622 0.93225 0.93053 1.13395 1.21070 0.95991 0.94369 0.94234 1.20567 0.97841 0.93266 1.05496 1.19747 0.95928 0.90240 1.05624 1.18358 0.73704 0.88834 0.73799 1.93167 1.33344 1.93672 1.95546 1.93221 1.87856 1.88913 1.45824 1.93222 1.77777 1.87829 1.56989 1.20225 0.96724 0.93162 1.08767 1.17485 0.86115 0.90539 0.89311 1.43541 1.04854 1.14159 1.76982 1.24108 0.97978 0.90727 1.07700 1.78270 0.90120 1.15040 1.25743 0.91394 0.83593 0.76738 0.84561 0.84371 0.84703 0.73221 0.77900 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.07 11.81 55.49 0.66 -20.42 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.52 29.55 -169.99 -5.02 13.49 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.32 -8.32 10.25 -14.82 -0.15 -8.47 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.75 3.74 -11.41 -0.04 -3.79 16 10 C -0.08 -1.87 11.49 -16.38 -0.19 -2.06 16 11 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 12 N -0.61 -10.28 5.41 -10.97 -0.06 -10.34 16 13 C 0.55 9.19 7.71 -12.52 -0.10 9.10 16 14 O -0.54 -10.45 10.79 5.25 0.06 -10.39 16 15 C -0.18 -2.41 5.89 -104.80 -0.62 -3.02 16 16 C -0.04 -0.38 9.52 -39.20 -0.37 -0.76 16 17 C -0.15 -1.43 9.41 -39.62 -0.37 -1.81 16 18 C -0.11 -1.14 5.38 -104.59 -0.56 -1.70 16 19 C 0.51 4.90 3.31 36.00 0.12 5.02 16 20 F -0.18 -1.68 15.95 2.25 0.04 -1.64 16 21 F -0.18 -1.77 17.23 2.25 0.04 -1.73 16 22 F -0.18 -1.78 17.23 2.25 0.04 -1.74 16 23 C -0.17 -1.69 9.41 -39.42 -0.37 -2.06 16 24 C 0.28 3.37 6.76 -83.61 -0.57 2.80 16 25 N -0.85 -9.71 8.93 32.55 0.29 -9.41 16 26 C -0.03 -0.75 10.85 -17.03 -0.18 -0.93 16 27 N -0.26 -7.38 10.39 30.80 0.32 -7.06 16 28 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 30 H 0.40 5.11 6.89 -40.82 -0.28 4.83 16 31 H 0.14 1.07 6.45 -52.49 -0.34 0.73 16 32 H 0.14 1.05 7.13 -52.48 -0.37 0.67 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.42 5.86 5.34 -40.94 -0.22 5.64 16 35 H 0.39 3.24 8.84 -40.82 -0.36 2.88 16 36 H 0.18 4.32 5.91 -52.48 -0.31 4.01 16 LS Contribution 327.56 15.07 4.94 4.94 Total: -1.00 -31.75 327.56 -5.07 -36.82 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -2.27 Total: 16.11 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.04 Total: -4.83 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 1.16 Total: -51.02 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.06 Total: -10.39 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.75 -5.07 -36.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.077 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.16 seconds