Wall clock time and date at job start Wed Apr 1 2020 00:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48498 * 109.47274 * 269.99736 * 3 2 1 5 5 H 1.48501 * 109.46967 * 30.00319 * 3 2 1 6 6 H 1.48502 * 109.46998 * 149.99714 * 3 2 1 7 7 C 1.38987 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00126 * 179.97438 * 7 2 1 9 9 N 1.37313 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.36498 * 126.07051 * 180.02562 * 9 7 2 11 11 C 1.35700 * 107.50594 * 179.97438 * 10 9 7 12 12 N 1.40537 * 126.08358 * 180.26049 * 11 10 9 13 13 C 1.34776 * 119.99992 * 179.71012 * 12 11 10 14 14 O 1.21627 * 120.00046 * 0.02562 * 13 12 11 15 15 C 1.47425 * 119.99822 * 179.97438 * 13 12 11 16 16 C 1.39734 * 120.20735 * 354.07366 * 15 13 12 17 17 C 1.37755 * 119.92077 * 179.97438 * 16 15 13 18 18 C 1.38606 * 120.35581 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.78737 * 179.97438 * 18 17 16 20 20 F 1.39893 * 109.47632 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47242 * 120.00324 * 19 18 17 22 22 F 1.39903 * 109.46652 * 239.99480 * 19 18 17 23 23 C 1.37964 * 120.42251 * 359.97438 * 18 17 16 24 24 C 1.38952 * 120.06298 * 359.74444 * 23 18 17 25 25 N 1.38886 * 120.17642 * 180.25518 * 24 23 18 26 26 C 1.40658 * 107.82794 * 359.97438 * 11 10 9 27 27 N 1.30907 * 108.39217 * 0.02562 * 26 11 10 28 28 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 29 29 H 1.07997 * 126.24764 * 359.95636 * 10 9 7 30 30 H 0.97002 * 120.00228 * 359.71777 * 12 11 10 31 31 H 1.07995 * 120.04176 * 0.02562 * 16 15 13 32 32 H 1.08005 * 119.81893 * 180.02562 * 17 16 15 33 33 H 1.07995 * 119.97272 * 180.02562 * 23 18 17 34 34 H 0.97001 * 120.00171 * 185.73469 * 25 24 23 35 35 H 0.96999 * 120.00237 * 5.72454 * 25 24 23 36 36 H 1.08007 * 125.80275 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4945 2.0464 -1.4000 5 1 1.4444 2.6526 0.7001 6 1 3.5445 1.4402 0.7001 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2037 0.0001 9 7 1.3214 -2.3929 0.0005 10 6 1.8751 -3.6405 0.0015 11 6 0.8578 -4.5386 0.0017 12 7 0.9889 -5.9378 0.0078 13 6 -0.1103 -6.7176 0.0132 14 8 -1.2158 -6.2104 0.0122 15 6 0.0273 -8.1854 0.0190 16 6 1.2885 -8.7738 -0.1057 17 6 1.4103 -10.1459 -0.0990 18 6 0.2875 -10.9482 0.0303 19 6 0.4355 -12.4479 0.0355 20 9 1.7864 -12.7837 -0.1027 21 9 -0.0519 -12.9604 1.2426 22 9 -0.2912 -12.9917 -1.0292 23 6 -0.9647 -10.3826 0.1544 24 6 -1.1072 -9.0004 0.1556 25 7 -2.3661 -8.4284 0.2857 26 6 -0.3513 -3.8197 0.0014 27 7 -0.0714 -2.5409 0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 2.9302 -3.8708 0.0018 30 1 1.8705 -6.3423 0.0083 31 1 2.1669 -8.1536 -0.2064 32 1 2.3861 -10.5990 -0.1951 33 1 -1.8346 -11.0146 0.2551 34 1 -2.4733 -7.4679 0.2030 35 1 -3.1382 -8.9894 0.4590 36 1 -1.3420 -4.2497 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625845708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:12 Heat of formation + Delta-G solvation = -88.050758 kcal Electronic energy + Delta-G solvation = -28012.488153 eV Core-core repulsion = 23275.953374 eV Total energy + Delta-G solvation = -4736.534779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.15465 -48.66186 -48.62186 -41.90613 -41.04816 -39.36523 -36.41049 -35.47752 -34.92714 -33.09110 -32.16450 -30.05803 -29.54389 -27.69308 -26.59132 -24.08608 -23.52883 -22.89046 -21.88862 -21.22712 -19.55175 -19.51067 -19.47429 -19.29099 -18.58596 -17.69493 -17.40576 -16.93915 -16.68602 -16.22892 -16.17568 -15.57178 -15.53314 -15.42780 -15.14632 -15.04962 -15.02884 -14.88440 -14.76878 -14.67291 -14.57165 -14.17879 -14.10978 -13.47410 -13.30641 -13.00203 -12.90588 -12.80535 -12.40970 -12.08586 -11.91212 -11.83739 -11.02274 -10.83443 -10.71471 -10.32930 -10.08894 -8.75603 -8.46485 -8.45562 -6.23102 -0.48003 0.45489 1.25197 1.40823 1.55382 1.58484 1.62212 1.86684 2.02931 2.26818 2.40459 2.65283 2.78584 2.88681 2.92481 3.10265 3.13134 3.42984 3.70729 3.80396 4.12036 4.21503 4.40314 4.45129 4.60268 4.70309 4.85447 5.01486 5.07893 5.16060 5.18449 5.30421 5.41727 5.57820 5.96411 6.29704 6.45227 6.66701 6.74637 6.90678 7.36451 7.47340 7.69152 8.52864 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.033384 B = 0.002096 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.518952 B =13353.505562 C =14013.917690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.168 5.168 10 C -0.079 4.079 11 C -0.046 4.046 12 N -0.605 5.605 13 C 0.550 3.450 14 O -0.574 6.574 15 C -0.207 4.207 16 C -0.028 4.028 17 C -0.147 4.147 18 C -0.111 4.111 19 C 0.513 3.487 20 F -0.173 7.173 21 F -0.178 7.178 22 F -0.179 7.179 23 C -0.163 4.163 24 C 0.268 3.732 25 N -0.851 5.851 26 C -0.056 4.056 27 N -0.311 5.311 28 H 0.276 0.724 29 H 0.189 0.811 30 H 0.419 0.581 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.154 0.846 34 H 0.414 0.586 35 H 0.407 0.593 36 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -22.300 0.280 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.063 4.937 10 C -0.229 4.229 11 C -0.152 4.152 12 N -0.249 5.249 13 C 0.341 3.659 14 O -0.455 6.455 15 C -0.216 4.216 16 C -0.046 4.046 17 C -0.167 4.167 18 C -0.114 4.114 19 C 0.459 3.541 20 F -0.154 7.154 21 F -0.160 7.160 22 F -0.160 7.160 23 C -0.186 4.186 24 C 0.155 3.845 25 N -0.397 5.397 26 C -0.231 4.231 27 N -0.143 5.143 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.258 0.742 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.255 0.745 35 H 0.236 0.764 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.046 -20.582 0.282 20.808 hybrid contribution 0.169 -0.376 0.033 0.413 sum 3.214 -20.958 0.315 21.205 Atomic orbital electron populations 1.70395 1.08393 1.29047 1.37465 1.26863 0.96468 1.04314 0.94191 0.84606 0.78331 0.74165 0.79205 1.18940 1.20333 1.16691 1.20608 0.92969 0.80879 1.53937 0.84133 1.44830 1.03645 1.04802 1.40432 1.22025 0.98900 0.84177 1.17809 1.17292 0.92948 0.83356 1.21603 1.42213 1.09556 1.02466 1.70619 1.18408 0.83819 0.86842 0.76798 1.90296 1.26674 1.74962 1.53617 1.19433 0.95008 0.90588 1.16583 1.21316 0.95584 0.95036 0.92713 1.20850 0.98740 0.92830 1.04322 1.19935 0.96120 0.90627 1.04719 1.18241 0.73768 0.88485 0.73656 1.93176 1.33109 1.93627 1.95520 1.93224 1.87897 1.88909 1.45933 1.93224 1.77857 1.87832 1.57092 1.20387 0.97720 0.92446 1.08006 1.17685 0.85976 0.91282 0.89584 1.43504 1.05540 1.13753 1.76867 1.24221 0.99129 0.90822 1.08951 1.78157 0.92035 1.16679 1.27414 0.91447 0.79381 0.74218 0.82035 0.81959 0.82847 0.74494 0.76355 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.16 11.81 21.66 0.26 -46.90 16 2 C -0.01 -0.35 5.50 84.95 0.47 0.12 16 3 Si 1.02 38.03 29.55 68.60 2.03 40.06 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.28 -10.35 7.11 99.48 0.71 -9.65 16 6 H -0.24 -8.23 7.11 99.48 0.71 -7.52 16 7 C -0.35 -18.33 10.25 84.01 0.86 -17.47 16 8 H 0.14 6.29 7.83 -2.91 -0.02 6.27 16 9 N -0.17 -9.14 3.74 -190.00 -0.71 -9.85 16 10 C -0.08 -3.50 11.49 83.38 0.96 -2.54 16 11 C -0.05 -2.01 6.90 37.75 0.26 -1.75 16 12 N -0.60 -19.58 5.41 -306.86 -1.66 -21.24 16 13 C 0.55 18.05 7.71 86.66 0.67 18.72 16 14 O -0.57 -22.54 10.79 -4.12 -0.04 -22.58 16 15 C -0.21 -5.08 5.89 -19.98 -0.12 -5.19 16 16 C -0.03 -0.48 9.52 22.52 0.21 -0.26 16 17 C -0.15 -2.27 9.41 22.24 0.21 -2.06 16 18 C -0.11 -1.91 5.38 -19.84 -0.11 -2.02 16 19 C 0.51 8.44 3.31 71.23 0.24 8.67 16 20 F -0.17 -2.76 15.95 44.97 0.72 -2.04 16 21 F -0.18 -3.11 17.23 44.97 0.77 -2.34 16 22 F -0.18 -3.14 17.23 44.97 0.77 -2.37 16 23 C -0.16 -2.95 9.41 22.38 0.21 -2.74 16 24 C 0.27 6.10 6.76 38.71 0.26 6.37 16 25 N -0.85 -19.16 8.93 -50.94 -0.46 -19.61 16 26 C -0.06 -2.93 10.85 85.42 0.93 -2.01 16 27 N -0.31 -18.37 10.39 -56.46 -0.59 -18.96 16 28 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.19 6.47 8.06 -2.91 -0.02 6.45 16 30 H 0.42 9.61 6.89 -92.71 -0.64 8.97 16 31 H 0.16 1.88 6.45 -2.91 -0.02 1.86 16 32 H 0.16 1.74 7.13 -2.91 -0.02 1.72 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.41 11.70 5.34 -94.55 -0.51 11.19 16 35 H 0.41 6.46 8.84 -92.71 -0.82 5.64 16 36 H 0.17 8.91 5.91 -2.91 -0.02 8.89 16 Total: -1.00 -72.56 327.56 5.40 -67.16 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.74 Total: 40.85 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.05 Total: -2.17 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.16 Total: -116.56 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.04 Total: -22.58 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 2.27 Total: -6.75 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -72.56 5.40 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625845708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.893 kcal (2) G-P(sol) polarization free energy of solvation -72.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds